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cn_combo_scaffold_2016

Alias: PLAS_PSE5_1

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_2016_1
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10..1593)
DNA (1584bp) protein (528aa)
Transglycosylase-like domain protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F2L6W0_PSEUX
Transglycosylase-like domain-containing protein
Transglycosylase-like domain protein {ECO:0000313|EMBL:AEA28832.1}; Flags: Precursor;; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="
cn_combo_scaffold_2016_2
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1596..3002)
DNA (1407bp) protein (469aa)
Uncharacterized protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F2L743_PSEUX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA29016.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (st
cn_combo_scaffold_2016_3
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3007..4365)
DNA (1359bp) protein (453aa)
Chromosome partitioning ATPase n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F2L744_PSEUX
chromosome partitioning ATPase
Chromosome partitioning ATPase {ECO:0000313|EMBL:AEA29017.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivor
cn_combo_scaffold_2016_4
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4362..5363)
DNA (1002bp) protein (334aa)
Uncharacterized protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F2L745_PSEUX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA29018.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (st
cn_combo_scaffold_2016_5
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5625..6179
DNA (555bp) protein (185aa)
Helix-turn-helix domain protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F2L747_PSEUX
helix-turn-helix domain protein
Helix-turn-helix domain protein {ECO:0000313|EMBL:AEA29020.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivo
cn_combo_scaffold_2016_6
Kutzneria albida, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6471..6851)
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1) RepID=F5XHM4_MICPN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHH98032.1}; TaxID=1449976 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria albida DSM 43870.;"
cn_combo_scaffold_2016_7
BJP_IG2157_Anaerolineales_55_23, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

7656..8423
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UGJ1_MYXSD
hypothetical protein
Tax=BJP_IG2157_Anaerolineales_55_23
cn_combo_scaffold_2016_8
unknown

Not on your lists

comp(8761..9087)
DNA (327bp) protein (109aa)

This feature has no annotations

cn_combo_scaffold_2016_9
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9099..10781)
DNA (1683bp) protein (561aa)
Cytochrome b/b6 domain protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CL25_PSEUX
cytochrome b/b6 domain-containing protein
Cytochrome b/b6 domain protein {ECO:0000313|EMBL:AEA24954.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivor
cn_combo_scaffold_2016_10
Streptomyces sp. MUSC164, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11073..11648
DNA (576bp) protein (192aa)
hypothetical protein n=1 Tax=Nonomuraea coxensis RepID=UPI0003648FB0
TetR family transcriptional regulator {ECO:0000313|EMBL:KKA41722.1}; TaxID=1354891 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. MUSC
TetR family transcriptional regulator
cn_combo_scaffold_2016_11
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11666..12166)
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Amycolatopsis nigrescens RepID=UPI0003779090
cupin
Cupin {ECO:0000313|EMBL:EQD87909.1}; TaxID=1382595 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora erythraea D.;"
cn_combo_scaffold_2016_12
Kibdelosporangium sp. MJ126-NF4, Kibdelosporangium, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12196..13461)
DNA (1266bp) protein (422aa)
3-oxoacyl-[acyl-carrier-protein] synthase, KASII {ECO:0000313|EMBL:CEL14739.1}; EC=2.3.1.41 {ECO:0000313|EMBL:CEL14739.1};; TaxID=703222 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonoc
pksF; polyketide beta-ketoacyl:acyl carrier protein synthase (EC:2.3.1.41)
Beta-ketoacyl-ACP synthase n=2 Tax=Saccharopolyspora erythraea RepID=A4FIG9_SACEN
cn_combo_scaffold_2016_13
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13454..15214)
DNA (1761bp) protein (587aa)
hypothetical protein n=1 Tax=Amycolatopsis nigrescens RepID=UPI00036C3B3F
pteA1; modular polyketide synthase rbh
Polyketide synthase {ECO:0000313|EMBL:EQD87911.1}; TaxID=1382595 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora erythraea D.;"
cn_combo_scaffold_2016_14
Kibdelosporangium sp. MJ126-NF4, Kibdelosporangium, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15211..15981)
DNA (771bp) protein (257aa)
Enoyl-CoA hydratase {ECO:0000313|EMBL:CEL14737.1}; EC=4.2.1.17 {ECO:0000313|EMBL:CEL14737.1};; TaxID=703222 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kibdelosporangium.
hypothetical protein n=1 Tax=Amycolatopsis nigrescens RepID=UPI0003818089
polyketide biosynthesis enoyl-CoA hydratase
cn_combo_scaffold_2016_15
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15974..16702)
DNA (729bp) protein (243aa)
Enoyl-CoA hydratase/isomerase family protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RIG7_PHEZH
enoyl-CoA hydratase/isomerase family protein
Enoyl-CoA hydratase/isomerase family protein {ECO:0000313|EMBL:ACG80142.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;"
cn_combo_scaffold_2016_16
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16704..17936)
DNA (1233bp) protein (411aa)
pksG; hydroxymethylglutaryl-CoA synthase (EC:2.3.3.10)
Hydroxymethylglutaryl-CoA synthase {ECO:0000313|EMBL:CAM03839.1}; EC=2.3.3.10 {ECO:0000313|EMBL:CAM03839.1};; TaxID=405948 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Sac
Hydroxymethylglutaryl-CoA synthase n=2 Tax=Saccharopolyspora erythraea RepID=A4FIG4_SACEN
cn_combo_scaffold_2016_17
unknown

Not on your lists

comp(17933..18196)
DNA (264bp) protein (88aa)

This feature has no annotations

cn_combo_scaffold_2016_18
Burkholderia mallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18183..18455)
DNA (273bp) protein (91aa)
Putative polyketide synthase {ECO:0000313|EMBL:EEP83421.1}; Flags: Fragment;; TaxID=320390 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseud
cn_combo_scaffold_2016_19
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18494..19507)
DNA (1014bp) protein (338aa)
hypothetical protein n=1 Tax=Amycolatopsis nigrescens RepID=UPI00036DE2CA
fabH5; 3-oxoacyl-ACP synthase rbh
3-oxoacyl-ACP synthase III {ECO:0000313|EMBL:CAM03836.1}; TaxID=405948 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora erythrae
cn_combo_scaffold_2016_20
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19504..20127)
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Streptomycetaceae bacterium MP113-05 RepID=V6L9R4_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EQD87917.1}; TaxID=1382595 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora erythraea
hypothetical protein
cn_combo_scaffold_2016_21
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20114..21907)
DNA (1794bp) protein (598aa)
ilvB1; acetolactate synthase (EC:2.2.1.6)
Acetolactate synthase {ECO:0000313|EMBL:CAM03834.1}; EC=2.2.1.6 {ECO:0000313|EMBL:CAM03834.1};; TaxID=405948 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora
Acetolactate synthase n=1 Tax=Saccharopolyspora erythraea D RepID=T2S691_SACER
cn_combo_scaffold_2016_22
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21894..23090)
DNA (1197bp) protein (399aa)
avtA; valine--pyruvate transaminase (EC:2.6.1.66)
Valine--pyruvate transaminase {ECO:0000313|EMBL:CAM03833.1}; EC=2.6.1.66 {ECO:0000313|EMBL:CAM03833.1};; TaxID=405948 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharo
Valine--pyruvate transaminase n=2 Tax=Saccharopolyspora erythraea RepID=A4FIF8_SACEN
cn_combo_scaffold_2016_23
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23461..24693
DNA (1233bp) protein (411aa)
rhf; cytochrome P450 (EC:1.14.-.-)
Cytochrome P450 n=2 Tax=Saccharopolyspora erythraea RepID=A4FIF6_SACEN
Cytochrome P450 {ECO:0000313|EMBL:EQD87870.1}; TaxID=1382595 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora erythraea D.;"
cn_combo_scaffold_2016_24
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24794..26173
DNA (1380bp) protein (460aa)
hypothetical protein n=1 Tax=Amycolatopsis nigrescens RepID=UPI0003641780
FAD dependent oxidoreductase rbh
FAD dependent oxidoreductase {ECO:0000313|EMBL:CAM03830.1}; TaxID=405948 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora erythr
cn_combo_scaffold_2016_25
Saccharomonospora cyanea, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26313..26930
DNA (618bp) protein (206aa)
Pyridoxine/pyridoxamine 5'-phosphate oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; EC=1.4.3.5 {ECO:0000256|HAMAP-Rule:MF_01629};; PNP/PMP oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; Pyridoxal 5'-phosphate
Pyridoxamine 5'-phosphate oxidase (EC:1.4.3.5)
Pyridoxine/pyridoxamine 5'-phosphate oxidase n=1 Tax=Saccharomonospora cyanea NA-134 RepID=H5XP36_9PSEU
cn_combo_scaffold_2016_26
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27865..28899)
DNA (1035bp) protein (345aa)
NLP/P60 protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F2L749_PSEUX
NLP/P60 protein rbh
NLP/P60 protein {ECO:0000313|EMBL:AEA29022.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATC
cn_combo_scaffold_2016_27
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28981..29871
DNA (891bp) protein (297aa)
Bifunctional DNA primase/polymerase n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F2L750_PSEUX
Bifunctional DNA primase/polymerase
Bifunctional DNA primase/polymerase {ECO:0000313|EMBL:AEA29023.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxa
cn_combo_scaffold_2016_28
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29868..30269
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F2L751_PSEUX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA29024.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (st
cn_combo_scaffold_2016_29
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30432..32015
DNA (1584bp) protein (528aa)
Uncharacterized protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F2L752_PSEUX
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEA29025.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (st
cn_combo_scaffold_2016_30
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32012..33394
DNA (1383bp) protein (461aa)
Replicative DNA helicase n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F2L753_PSEUX
replicative DNA helicase
Replicative DNA helicase {ECO:0000313|EMBL:AEA29026.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (s
Displaying items 1-30 of 32 in total

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