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cn_combo_scaffold_522

Alias: ACIDO32_17

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Displaying items 1-30 of 127 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_522_1
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(3..1622)
DNA (1620bp) protein (540aa)
subtilisin-like serine protease id=12555736 bin=CNBR_ACIDO species=Desulfotomaculum gibsoniae genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
peptidase S8 and S53 subtilisin kexin sedolisin Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
intracellular alkaline serine proteinase
cn_combo_scaffold_522_2
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

2225..3325
DNA (1101bp) protein (367aa)
class V aminotransferase; K00830 alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] id=12555737 bin=CNBR_ACIDO species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
class V aminotransferase; K00830 alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_6
class V aminotransferase
cn_combo_scaffold_522_3
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

3322..4752
DNA (1431bp) protein (477aa)
peptidase M48 Ste24p id=12555738 bin=CNBR_ACIDO species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
peptidase M48 Ste24p Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
peptidase M48 Ste24p
cn_combo_scaffold_522_4
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

4749..5618
DNA (870bp) protein (290aa)
mtgA; monofunctional biosynthetic peptidoglycan transglycosylase; K03814 monofunctional biosynthetic peptidoglycan transglycosylase [EC:2.4.1.-] id=12555739 bin=CNBR_ACIDO species=unknown genus=Chlorobium taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
monofunctional biosynthetic peptidoglycan transglycosylase; K03814 monofunctional biosynthetic peptidoglycan transglycosylase [EC:2.4.1.-] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
mtgA; monofunctional biosynthetic peptidoglycan transglycosylase
cn_combo_scaffold_522_5
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5625..6188)
DNA (564bp) protein (188aa)
hypothetical protein id=12555740 bin=CNBR_ACIDO species=Pandoraea pnomenusa genus=Pandoraea taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hydrolase Nlp/P60
Hydrolase Nlp/P60 {ECO:0000313|EMBL:AHB06241.1}; TaxID=1416914 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa 3kgm.;
cn_combo_scaffold_522_6
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

6335..6865
DNA (531bp) protein (177aa)
putative HNH endonuclease (EC:3.1.-.-) id=12555741 bin=CNBR_ACIDO species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
putative HNH endonuclease (EC:3.1.-.-) Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
putative HNH endonuclease (EC:3.1.-.-)
cn_combo_scaffold_522_7
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

6875..7900
DNA (1026bp) protein (342aa)
hypothetical protein id=12555742 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein
cn_combo_scaffold_522_8
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

7944..10781
DNA (2838bp) protein (946aa)
excinuclease ABC subunit A; K03701 excinuclease ABC subunit A id=12555743 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
excinuclease ABC subunit A; K03701 excinuclease ABC subunit A Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
excinuclease ABC subunit A
cn_combo_scaffold_522_9
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

10983..11882
DNA (900bp) protein (300aa)
lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC:3.5.1.-); K02535 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] id=12555744 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; K02535 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curat
UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
cn_combo_scaffold_522_10
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(11946..12227)
DNA (282bp) protein (94aa)
id=12555745 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
id=12555745 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
cn_combo_scaffold_522_11
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(12230..12571)
DNA (342bp) protein (114aa)
anti-sigma-factor antagonist; K04749 anti-sigma B factor antagonist id=12555746 bin=CNBR_ACIDO species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
anti-sigma B factor antagonist; K04749 anti-sigma B factor antagonist Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
anti-sigma-factor antagonist
cn_combo_scaffold_522_12
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(12568..13200)
DNA (633bp) protein (211aa)
ECF subfamily RNA polymerase sigma-24 factor id=12555747 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
ECF subfamily RNA polymerase sigma-24 factor
cn_combo_scaffold_522_13
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

13282..14529
DNA (1248bp) protein (416aa)
diaminopimelate decarboxylase; K01586 diaminopimelate decarboxylase [EC:4.1.1.20] id=12555748 bin=CNBR_ACIDO species=Roseomonas sp. B5 genus=Roseomonas taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
diaminopimelate decarboxylase; K01586 diaminopimelate decarboxylase [EC:4.1.1.20] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
diaminopimelate decarboxylase
cn_combo_scaffold_522_14
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

14529..15113
DNA (585bp) protein (195aa)
tmk; putative thymidylate kinase (EC:2.7.4.9)
thymidylate kinase id=12555749 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
thymidylate kinase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
cn_combo_scaffold_522_15
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(15064..15831)
DNA (768bp) protein (256aa)
comF; competence protein F id=12555750 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
phosphoribosyltransferase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
comF; competence protein F
cn_combo_scaffold_522_16
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(15929..16330)
DNA (402bp) protein (134aa)
iojap superfamily protein; K09710 ribosome-associated protein id=12555751 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Iojap-related protein; K09710 ribosome-associated protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
iojap superfamily protein
cn_combo_scaffold_522_17
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(16327..16989)
DNA (663bp) protein (221aa)
nadD; nicotinic acid mononucleotide adenylyltransferase (EC:2.7.7.18); K00969 nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] id=12555752 bin=CNBR_ACIDO species=Pseudomonas mendocina genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
nicotinate/nicotinamide nucleotide adenylyltransferase (EC:2.7.7.18) Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
nadD; nicotinic acid mononucleotide adenylyltransferase (EC:2.7.7.18)
cn_combo_scaffold_522_18
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(16986..18074)
DNA (1089bp) protein (363aa)
obgE; GTPase ObgE; K03979 GTP-binding protein id=12555753 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
obgE; GTPase ObgE; K03979 GTP-binding protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
obgE; GTPase ObgE
cn_combo_scaffold_522_19
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists


comp(18153..18440)
DNA (288bp) protein (96aa)
rpmA; 50S ribosomal protein L27 id=12555754 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
50S ribosomal protein L27; K02899 large subunit ribosomal protein L27 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
rpmA; 50S ribosomal protein L27
cn_combo_scaffold_522_20
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists


comp(18486..18800)
DNA (315bp) protein (105aa)
rplU; 50S ribosomal protein L21 id=12555755 bin=CNBR_ACIDO species=Thermacetogenium phaeum genus=Thermacetogenium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rplU; 50S ribosomal protein L21 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
rplU; 50S ribosomal protein L21
cn_combo_scaffold_522_21
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(18988..19749)
DNA (762bp) protein (254aa)
id=12555756 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
id=12555756 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
cn_combo_scaffold_522_22
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(19718..20071)
DNA (354bp) protein (118aa)
TPR Domain containing protein id=12555757 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
serine/threonine protein kinase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
TPR domain protein, putative component of TonB system
cn_combo_scaffold_522_23
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

20253..21347
DNA (1095bp) protein (365aa)
smf; protein Smf; K04096 DNA processing protein id=12555758 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
smf_[H]; Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
smf; protein Smf
cn_combo_scaffold_522_24
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

21384..23840
DNA (2457bp) protein (819aa)
topA; DNA topoisomerase I (EC:5.99.1.2) id=12555759 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
DNA topoisomerase; K03168 DNA topoisomerase I [EC:5.99.1.2] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
topA; DNA topoisomerase I (EC:5.99.1.2)
cn_combo_scaffold_522_25
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

23988..25454
DNA (1467bp) protein (489aa)
hypothetical protein (EC:2.1.1.74); K04094 methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74] id=12555760 bin=CNBR_ACIDO species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
tRNA (uracil-5-)-methyltransferase Gid; K04094 methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
hypothetical protein (EC:2.1.1.74)
cn_combo_scaffold_522_26
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

25451..26428
DNA (978bp) protein (326aa)
xerC; tyrosine recombinase XerC id=12555761 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
tyrosine recombinase XerC; K03733 integrase/recombinase XerC Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
xerC; tyrosine recombinase XerC
cn_combo_scaffold_522_27
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(26475..27878)
DNA (1404bp) protein (468aa)
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains id=12555762 bin=CNBR_ACIDO species=Thermoanaerobacterium thermosaccharolyticum genus=Thermoanaerobacterium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Fis family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains
cn_combo_scaffold_522_28
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(27881..28987)
DNA (1107bp) protein (369aa)
signal transduction histidine kinase, nitrogen specific, NtrB; K07708 two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] Tax=RIFCSPLOWO2_12_FULL_Acidobac
signal transduction histidine kinase, nitrogen specific, NtrB id=12555763 bin=CNBR_ACIDO species=Desulfobulbus propionicus genus=Desulfobulbus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
signal transduction histidine kinase, nitrogen specific, NtrB
cn_combo_scaffold_522_29
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(29229..31259)
DNA (2031bp) protein (677aa)
ABC transporter ATPase; K06158 ATP-binding cassette, subfamily F, member 3 id=12555764 bin=CNBR_ACIDO species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ABC transporter ATPase; K06158 ATP-binding cassette, subfamily F, member 3 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
ABC transporter ATP-binding protein
cn_combo_scaffold_522_30
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(31317..31907)
DNA (591bp) protein (197aa)
response regulator receiver protein id=12555765 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=Dehalococcoidia phylum=Chloroflexi tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
response regulator receiver protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
response regulator receiver protein
Displaying items 1-30 of 127 in total

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