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cn_combo_scaffold_518

Alias: ACIDO32_18

Search features with annotation key words

Displaying items 1-30 of 104 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_518_1
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

90..1985
DNA (1896bp) protein (632aa)
oligoendopeptidase F; K08602 oligoendopeptidase F [EC:3.4.24.-] id=12555859 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
oligoendopeptidase F; K08602 oligoendopeptidase F [EC:3.4.24.-] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
hypothetical protein
cn_combo_scaffold_518_2
CNBR_ACIDO, CNBR_ACIDO, CNBR_ACIDO, CNBR_ACIDO, Acidobacteria, Bacteria

Not on your lists

2030..2815
DNA (786bp) protein (262aa)
id=12555860 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
id=12555860 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
cn_combo_scaffold_518_3
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(2889..4250)
DNA (1362bp) protein (454aa)
nucleotide sugar dehydrogenase id=12555861 bin=CNBR_ACIDO species=Mycobacterium rhodesiae genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
nucleotide sugar dehydrogenase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
nucleotide sugar dehydrogenase
cn_combo_scaffold_518_4
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

4714..6783
DNA (2070bp) protein (690aa)
radical SAM domain protein id=12555862 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
radical SAM family Fe-S protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
radical SAM domain-containing protein
cn_combo_scaffold_518_5
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

7211..8530
DNA (1320bp) protein (440aa)
hexuronate transporter; K08191 MFS transporter, ACS family, hexuronate transporter id=12555863 bin=CNBR_ACIDO species=Xanthomonas albilineans genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
hexuronate transporter
cn_combo_scaffold_518_6
CNBR_ACIDO, CNBR_ACIDO, CNBR_ACIDO, CNBR_ACIDO, Acidobacteria, Bacteria

Not on your lists

8649..9140
DNA (492bp) protein (164aa)
id=12555864 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
id=12555864 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
cn_combo_scaffold_518_7
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

9198..10112
DNA (915bp) protein (305aa)
HTH-type transcriptional regulator soxR id=12555865 bin=CNBR_ACIDO species=Paenibacillus sp. JC66 genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
LysR family transcriptional regulator Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
transcriptional regulator, LysR family protein
cn_combo_scaffold_518_8
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

10239..14822
DNA (4584bp) protein (1528aa)
gltB; glutamate synthase [NADPH] large chain (EC:1.4.1.13) id=12555866 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
gltB; glutamate synthase [NADPH] large chain (EC:1.4.1.13) Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
gltB; glutamate synthase [NADPH] large chain (EC:1.4.1.13)
cn_combo_scaffold_518_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

14815..16269
DNA (1455bp) protein (485aa)
gltD; glutamate synthase [NADPH] small chain (EC:1.4.1.13) id=12555867 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
gltD; glutamate synthase [NADPH] small chain (EC:1.4.1.13) Tax=GWA2_Rokubacteria_73_35_curated
gltD; glutamate synthase [NADPH] small chain (EC:1.4.1.13)
cn_combo_scaffold_518_10
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

16298..17854
DNA (1557bp) protein (519aa)
Fis family transcriptional regulator; K02584 Nif-specific regulatory protein id=12555868 bin=CNBR_ACIDO species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Nif-specific regulatory protein {ECO:0000313|EMBL:CDM64027.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Fis family transcriptional regulator
cn_combo_scaffold_518_11
Cellvibrio sp. BR, Cellvibrio, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17936..20128
DNA (2193bp) protein (731aa)
gla67A; alpha-glucuronidase (EC:3.2.1.139); K01235 alpha-glucuronidase [EC:3.2.1.139] id=12555869 bin=CNBR_ACIDO species=Cellvibrio sp. BR genus=Cellvibrio taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Xylan alpha-1,2-glucuronidase {ECO:0000256|RuleBase:RU361198}; EC=3.2.1.131 {ECO:0000256|RuleBase:RU361198};; TaxID=1134474 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pse
gla67A; alpha-glucuronidase (EC:3.2.1.139)
cn_combo_scaffold_518_12
CNBR_ACIDO, CNBR_ACIDO, CNBR_ACIDO, CNBR_ACIDO, Acidobacteria, Bacteria

Not on your lists

20549..21373
DNA (825bp) protein (275aa)
id=12555870 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
id=12555870 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
cn_combo_scaffold_518_13
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

21427..24021
DNA (2595bp) protein (865aa)
metal dependent phosphohydrolase (EC:2.7.7.59); K00990 [protein-PII] uridylyltransferase [EC:2.7.7.59] id=12555871 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
metal dependent phosphohydrolase (EC:2.7.7.59); K00990 [protein-PII] uridylyltransferase [EC:2.7.7.59] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
metal dependent phosphohydrolase (EC:2.7.7.59)
cn_combo_scaffold_518_14
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

24008..24337
DNA (330bp) protein (110aa)
nitrogen regulatory protein P-II; K04752 nitrogen regulatory protein P-II 2 id=12555872 bin=CNBR_ACIDO species=Sinorhizobium medicae genus=Sinorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
nitrogen regulatory protein P-II; K04751 nitrogen regulatory protein P-II 1 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
nitrogen regulatory protein P-II
cn_combo_scaffold_518_15
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

24443..25840
DNA (1398bp) protein (466aa)
ammonium transporter; K03320 ammonium transporter, Amt family id=12555873 bin=CNBR_ACIDO species=Thermus thermophilus genus=Thermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ammonium transporter; K03320 ammonium transporter, Amt family Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
ammonium transporter
cn_combo_scaffold_518_16
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

25962..26291
DNA (330bp) protein (110aa)
glnB; nitrogen regulatory protein P-II 1; K04751 nitrogen regulatory protein P-II 1 id=12555874 bin=CNBR_ACIDO species=Sphingobium sp. SYK-6 genus=Sphingobium taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
nitrogen regulatory protein P-II; K04751 nitrogen regulatory protein P-II 1 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
glnB; nitrogen regulatory protein P-II 1
cn_combo_scaffold_518_17
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26326..27510)
DNA (1185bp) protein (395aa)
isochorismate synthase; K02361 isochorismate synthase [EC:5.4.4.2] id=12555875 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Putative isochorismate synthase DhbC {ECO:0000313|EMBL:EHL97690.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacterac
isochorismate synthase
cn_combo_scaffold_518_18
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

27592..28305
DNA (714bp) protein (238aa)
winged helix family two component transcriptional regulator; K07665 two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR id=12555876 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
winged helix family two component transcriptional regulator; K07665 two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR Tax=RBG_16_Acidobacteria_70_10_curate
winged helix family two component transcriptional regulator
cn_combo_scaffold_518_19
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28316..29707
DNA (1392bp) protein (464aa)
HAMP domain-containing sensor histidine kinase id=12555877 bin=CNBR_ACIDO species=Geobacter bemidjiensis genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
heavy metal sensor signal transduction histidine kinase Tax=GWA2_Burkholderiales_64_37_curated
HAMP domain-containing sensor histidine kinase
cn_combo_scaffold_518_20

Not on your lists

comp(29796..30560)
DNA (765bp) protein (255aa)
short-chain dehydrogenase/reductase SDR id=12555878 bin=CNBR_ACIDO species=Aureimonas ureilytica genus=Aureimonas taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Uncharacterized protein {ECO:0000313|EMBL:KKN91620.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
short-chain dehydrogenase/reductase SDR
cn_combo_scaffold_518_21
Burkholderia graminis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30622..31899)
DNA (1278bp) protein (426aa)
fsr; fosmidomycin efflux system, member of the major facilitator superfamily, fosmidomycin resistance protein id=12555879 bin=CNBR_ACIDO species=Burkholderia sp. SJ98 genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:EDT07377.1}; TaxID=396598 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkho
major facilitator superfamily protein
cn_combo_scaffold_518_22
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

31911..32567
DNA (657bp) protein (219aa)
id=12555880 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
id=12555880 Tax=RBG_16_Acidobacteria_70_10_curated
cn_combo_scaffold_518_23
Myxococcus xanthus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32557..33306
DNA (750bp) protein (250aa)
PspA/IM30 family protein; K03969 phage shock protein A id=12555881 bin=CNBR_ACIDO species=Myxococcus xanthus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
PspA/IM30 family protein
PspA/IM30 family protein {ECO:0000313|EMBL:ABF90083.1}; TaxID=246197 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxoco
cn_combo_scaffold_518_24
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

33322..34206
DNA (885bp) protein (295aa)
hypothetical protein id=12555882 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein Tax=RBG_16_Acidobacteria_70_10_curated
hypothetical protein
cn_combo_scaffold_518_25
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34203..35960
DNA (1758bp) protein (586aa)
AAA ATPase id=12555883 bin=CNBR_ACIDO species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
AAA ATPase
Cell division protein FtsH {ECO:0000313|EMBL:EPX63097.1}; TaxID=1242864 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source=
cn_combo_scaffold_518_26
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

Not on your lists

35988..37646
DNA (1659bp) protein (553aa)
monoamine oxidase (EC:1.4.3.4) id=12555884 bin=CNBR_ACIDO species=Fibrisoma limi genus=Fibrisoma taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
monoamine oxidase (EC:1.4.3.4) Tax=RBG_16_Armatimonadetes_67_12_curated
hypothetical protein
cn_combo_scaffold_518_27
GWD2_Desulfuromonadales_61_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37673..38770
DNA (1098bp) protein (366aa)
peptidoglycan-binding LysM id=12555885 bin=CNBR_ACIDO species=Thiothrix nivea genus=Thiothrix taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein Tax=GWD2_Desulfuromonadales_61_12_curated
peptidoglycan-binding LysM
cn_combo_scaffold_518_28
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(38856..39794)
DNA (939bp) protein (313aa)
moaA; molybdenum cofactor biosynthesis protein A; K03639 molybdenum cofactor biosynthesis protein id=12555886 bin=CNBR_ACIDO species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
moaA; molybdenum cofactor biosynthesis protein A; K03639 molybdenum cofactor biosynthesis protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
moaA; molybdenum cofactor biosynthesis protein A
cn_combo_scaffold_518_29
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

40004..40516
DNA (513bp) protein (171aa)
yrdA; putative transferase id=12555887 bin=CNBR_ACIDO species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
yrdA; putative transferase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
yrdA; putative transferase
cn_combo_scaffold_518_30
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists


40550..41914
DNA (1365bp) protein (455aa)
hisS; histidyl-tRNA synthetase; K01892 histidyl-tRNA synthetase [EC:6.1.1.21] id=12555888 bin=CNBR_ACIDO species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hisS; histidyl-tRNA synthetase; K01892 histidyl-tRNA synthetase [EC:6.1.1.21] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
hisS; histidyl-tRNA synthetase
Displaying items 1-30 of 104 in total

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