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cn_combo_scaffold_540

Alias: GEM22_12

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Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_540_1
unknown

Not on your lists

comp(872..1135)
DNA (264bp) protein (88aa)

This feature has no annotations

cn_combo_scaffold_540_2
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2104..5691
DNA (3588bp) protein (1196aa)
Superfamily II DNA/RNA helicase, SNF2 family protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TXZ2_9PROT
superfamily II DNA/RNA helicase, SNF2 family protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
putative helicase
cn_combo_scaffold_540_3
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5688..7307
DNA (1620bp) protein (540aa)
transcriptional regulator id=12557495 bin=CNBR_ACIDO species=Acidovorax radicis genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
transcriptional regulator
cn_combo_scaffold_540_4
Methanosarcina mazei, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

7673..10585
DNA (2913bp) protein (971aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI00037991BE
Adenine-specific DNA methylase containing a Zn-ribbon {ECO:0000313|EMBL:AKB61064.1}; TaxID=1434115 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarci
hypothetical protein
cn_combo_scaffold_540_5
Mesorhizobium sp. LNJC391B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10589..13918
DNA (3330bp) protein (1110aa)
UPI0003CE6BE0 related cluster n=1 Tax=unknown RepID=UPI0003CE6BE0
Uncharacterized protein {ECO:0000313|EMBL:ESY27443.1}; TaxID=1287273 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp.
hypothetical protein
cn_combo_scaffold_540_6
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13924..18225
DNA (4302bp) protein (1434aa)
hypothetical protein n=1 Tax=Nocardiopsis prasina RepID=UPI000344DA9C
Putative helicase senataxin {ECO:0000313|EMBL:GAM10438.1}; TaxID=1266765 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp.
superfamily I DNA/RNA helicase
cn_combo_scaffold_540_7
Marinobacter hydrocarbonoclasticus, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18380..18544)
DNA (165bp) protein (55aa)
Restriction endonuclease n=1 Tax=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) RepID=A1U635_MARAV
restriction endonuclease
Restriction endonuclease {ECO:0000313|EMBL:ABM20454.1}; TaxID=351348 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter hyd
cn_combo_scaffold_540_8
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18655..19587
DNA (933bp) protein (311aa)
integrase n=1 Tax=Sphingomonas elodea RepID=UPI0002631A91
Integrase catalytic subunit
Integrase catalytic region {ECO:0000313|EMBL:CDX21153.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium pl
cn_combo_scaffold_540_9
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

19866..21107
DNA (1242bp) protein (414aa)
ATPase, AAA+ superfamily n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJ83_9BACT
AAA ATPase
ATPase, AAA+ superfamily {ECO:0000313|EMBL:CBE67448.1}; TaxID=671143 species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
cn_combo_scaffold_540_10
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

21139..22359
DNA (1221bp) protein (407aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4V8_GEMAT
Protein of unknown function DUF457, transmembrane rbh
Uncharacterized protein {ECO:0000313|EMBL:AHG93818.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_540_11
unknown

Not on your lists

comp(22822..22977)
DNA (156bp) protein (52aa)

This feature has no annotations

cn_combo_scaffold_540_12
Rubinisphaera brasiliensis, Rubinisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

23114..23488
DNA (375bp) protein (125aa)
Putative uncharacterized protein n=1 Tax=Planctomyces brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448) RepID=F0SKT1_PLABD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADY58751.1}; TaxID=756272 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rubinisphaera.;" source="Rubinisphaera brasi
cn_combo_scaffold_540_13
RBG_16_Ignavibacteria_35_7_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

23591..23794
DNA (204bp) protein (68aa)
hypothetical protein Tax=RBG_16_Ignavibacteria_35_7_curated
hypothetical protein GobsU_37877 id=4647260 bin=GWF2_Ignavibacteria_35_20 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
cn_combo_scaffold_540_14
RLO_RIF03_38_15, RIF3, Bacteria

Not on your lists

23808..24476
DNA (669bp) protein (223aa)
lytic transglycosylase, catalytic Tax=RIFCSPLOWO2_12_FULL_RIF03_38_15_curated
ligand-binding/transglycosylase domain-containing protein id=4647262 bin=GWF2_Ignavibacteria_35_20 species=SAR324 cluster bacterium SCGC AAA001-C10 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
putative soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein
cn_combo_scaffold_540_15
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

24524..25312
DNA (789bp) protein (263aa)
thermonuclease (EC:3.1.31.1); K01174 micrococcal nuclease [EC:3.1.31.1] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Nuclease (SNase domain-containing protein) n=1 Tax=Microcoleus vaginatus FGP-2 RepID=F5UP92_9CYAN
nuclease (SNase domain-containing protein)
cn_combo_scaffold_540_16
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

25306..25842
DNA (537bp) protein (179aa)
hypothetical protein id=24471008 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Azoarcus sp. genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
Appr-1-p processing protein
cn_combo_scaffold_540_17
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(25839..27350)
DNA (1512bp) protein (504aa)
D-aminoacylase n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KIG2_9GAMM
D-aminoacylase domain protein
D-aminoacylase domain protein {ECO:0000313|EMBL:AHG92236.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_540_18
R_NC10_66_22, NC10, Bacteria

Not on your lists

27648..28886
DNA (1239bp) protein (413aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ACZ1_GEMAT
oxidoreductase with FAD/NAD(P)-binding domain Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
hypothetical protein
cn_combo_scaffold_540_19
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(28978..30708)
DNA (1731bp) protein (577aa)
N-acyl-D-aspartate/D-glutamate deacylase n=2 Tax=Singulisphaera acidiphila RepID=L0DJD3_SINAD
D-aminoacylase domain protein
D-aminoacylase domain protein {ECO:0000313|EMBL:AHG89803.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_540_20
BJP_08E140C01_Anaerolineales_40_8, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

30975..31598
DNA (624bp) protein (208aa)
hypothetical protein n=1 Tax=Terracoccus sp. 273MFTsu3.1 RepID=UPI0003654449
trypsin-like serine protease
Tax=BJP_08E140C01_Anaerolineales_40_8
cn_combo_scaffold_540_21
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(31714..33006)
DNA (1293bp) protein (431aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABA5_GEMAT
RagB/SusD domain-containing protein rbh
RagB/SusD domain-containing protein {ECO:0000313|EMBL:AHG93657.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_540_22
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(33027..36059)
DNA (3033bp) protein (1011aa)
Putative outer membrane protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABA6_GEMAT
TonB-dependent outer membrane protein, SusC/RagA
TonB-dependent outer membrane protein, SusC/RagA {ECO:0000313|EMBL:AHG93656.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_540_23
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(36299..36802)
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ACE8_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH40175.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-
cn_combo_scaffold_540_24
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

37038..37445
DNA (408bp) protein (136aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG93379.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_540_25
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

37642..40902
DNA (3261bp) protein (1087aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01XN3_SOLUE
Uncharacterized protein {ECO:0000313|EMBL:AHG92472.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
hypothetical protein
cn_combo_scaffold_540_26
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(40992..42926)
DNA (1935bp) protein (645aa)
aehA; alpha-amino acid ester hydrolase (EC:3.1.1.43)
Alpha-amino acid ester hydrolase {ECO:0000313|EMBL:BAH40349.1}; EC=3.1.1.43 {ECO:0000313|EMBL:BAH40349.1};; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemma
Alpha-amino acid ester hydrolase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ACX2_GEMAT
cn_combo_scaffold_540_27
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(43133..44617)
DNA (1485bp) protein (495aa)
phosphoesterase PA-phosphatase related protein rbh
Phosphoesterase PA-phosphatase related protein {ECO:0000313|EMBL:AHG89368.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PA-phosphatase-like phosphoesterase id=14633131 bin=bin9_gal15 species=Mesorhizobium amorphae genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin9_gal15 organism_group=GAL15
cn_combo_scaffold_540_28
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(44614..45633)
DNA (1020bp) protein (340aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG89367.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_540_29
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(45630..46139)
DNA (510bp) protein (170aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG89282.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
cn_combo_scaffold_540_30
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(46164..47408)
DNA (1245bp) protein (415aa)
RagB/SusD domain-containing protein
RagB/SusD domain-containing protein {ECO:0000313|EMBL:AHG89370.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Displaying items 1-30 of 49 in total

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