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cn_combo_scaffold_664

Alias: PHE30_25

Search features with annotation key words

Displaying items 1-30 of 69 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_664_1
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(1..696)
DNA (696bp) protein (232aa)
30S ribosomal protein S1 n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RCK5_PHEZH
rpsA; 30S ribosomal protein S1
30S ribosomal protein S1 {ECO:0000256|PIRNR:PIRNR002111}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobac
cn_combo_scaffold_664_2
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(870..1526)
DNA (657bp) protein (219aa)
cmk; cytidylate monophosphate kinase; K00945 cytidylate kinase [EC:2.7.4.14] Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
Cytidylate kinase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RCK4_PHEZH
cmk; cytidylate monophosphate kinase
cn_combo_scaffold_664_3
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1543..2880)
DNA (1338bp) protein (446aa)
aroA; 3-phosphoshikimate 1-carboxyvinyltransferase; K00800 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=AROA_PHEZH
aroA; 3-phosphoshikimate 1-carboxyvinyltransferase
cn_combo_scaffold_664_4
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3005..3469
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RCK2_PHEZH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACG76601.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacter
cn_combo_scaffold_664_trna_1
unknown

Not on your lists

3675..3747
DNA (73bp)
transferRNA
cn_combo_scaffold_664_5
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3896..5350)
DNA (1455bp) protein (485aa)
Sulfatase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IFQ0_9SPHN
sulfatase
Sulfatase {ECO:0000313|EMBL:CCA91125.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;
cn_combo_scaffold_664_6
Paraglaciecola psychrophila, Paraglaciecola, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5481..6227
DNA (747bp) protein (249aa)
3-oxoadipate enol-lactone hydrolase n=1 Tax=Glaciecola psychrophila 170 RepID=K6ZN98_9ALTE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGH45664.1}; TaxID=1129794 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Paraglaciecola.;" source="Paraglaciecola
cn_combo_scaffold_664_7
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6252..7040)
DNA (789bp) protein (263aa)
Short-chain dehydrogenase reductase sdr n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MKF9_9BURK
Short-chain dehydrogenase reductase sdr {ECO:0000313|EMBL:EIK89699.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hy
fabG; 3-ketoacyl-ACP reductase
cn_combo_scaffold_664_8
Corallococcus coralloides, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7317..8018
DNA (702bp) protein (234aa)
TetR family transcriptional regulator n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MN94_CORCM
TetR family transcriptional regulator
TetR family transcriptional regulator {ECO:0000313|EMBL:AFE05327.1}; TaxID=1144275 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus.
cn_combo_scaffold_664_9
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

8080..9051
DNA (972bp) protein (324aa)
Sulfatase modifying factor 1 {ECO:0000313|EMBL:CCH51840.1}; EC=1.13.-.- {ECO:0000313|EMBL:CCH51840.1};; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibriso
hypothetical protein n=1 Tax=Rudanella lutea RepID=UPI000382405A
sulfatase-modifying factor protein
cn_combo_scaffold_664_10
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

Not on your lists

9071..10567
DNA (1497bp) protein (499aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0003752130
sulfatase Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
N-acetylgalactosamine 6-sulfatase (GALNS)
cn_combo_scaffold_664_11
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10587..12074
DNA (1488bp) protein (496aa)
Uncharacterized protein n=1 Tax=Glaciecola chathamensis S18K6 RepID=K6Y2K1_9ALTE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACJ00217.1}; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillu
cn_combo_scaffold_664_12
Frankia sp. CN3, Frankia, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(12075..13040)
DNA (966bp) protein (322aa)
Uncharacterized protein n=1 Tax=Frankia sp. CN3 RepID=G6HH02_9ACTO
cn_combo_scaffold_664_13
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13037..13645)
DNA (609bp) protein (203aa)
Transcriptional regulator, TetR family n=2 Tax=Myxococcus xanthus RepID=Q1D4I5_MYXXD
Transcriptional regulator, TetR family protein {ECO:0000313|EMBL:KFE68200.1}; TaxID=394096 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hya
TetR family transcriptional regulator
cn_combo_scaffold_664_14
Hyphomonas oceanitis, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14066..16291
DNA (2226bp) protein (742aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI000367AB9E
TonB-dependent receptor {ECO:0000313|EMBL:KDA01525.1}; TaxID=1280953 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas oceaniti
TonB-dependent receptor
cn_combo_scaffold_664_15
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16365..16952
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRI5_PARL1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS62518.1}; Flags: Precursor;; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvib
cn_combo_scaffold_664_16
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16943..17494
DNA (552bp) protein (184aa)
Integral membrane protein-like protein {ECO:0000313|EMBL:ABD26655.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" sourc
cn_combo_scaffold_664_17
Pseudomonas knackmussii, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17495..18604
DNA (1110bp) protein (370aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI0003826C15
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDF85380.1}; TaxID=1301098 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas knack
cn_combo_scaffold_664_18
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18634..18951)
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QMN3_BREDI
Uncharacterized protein {ECO:0000313|EMBL:EKY29243.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas d
hypothetical protein
cn_combo_scaffold_664_19
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18972..20273)
DNA (1302bp) protein (434aa)
CBS domain protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RCT8_PHEZH
hypothetical protein rbh
CBS domain protein {ECO:0000313|EMBL:ACG78275.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium z
cn_combo_scaffold_664_20
Hirschia baltica, Hirschia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20409..20972
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Hirschia baltica (strain ATCC 49814 / DSM 5838 / IFAM 1418) RepID=C6XS44_HIRBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT60885.1}; TaxID=582402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hirschia.;" source="Hirschia baltica (stra
cn_combo_scaffold_664_21
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21140..21562
DNA (423bp) protein (141aa)
Heat shock protein HSP20 n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RCJ8_PHEZH
heat shock protein Hsp20
Heat shock protein HSP20 {ECO:0000313|EMBL:ACG76597.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacte
cn_combo_scaffold_664_22
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21672..21929
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RCJ7_PHEZH
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
hypothetical protein
cn_combo_scaffold_664_23
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21968..22432)
DNA (465bp) protein (155aa)
ptsN; PTS system, nitrogen regulatory IIA component ptsN; K02806 PTS system, nitrogen regulatory IIA component [EC:2.7.1.69] Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
PTS system, nitrogen regulatory IIA component ptsN n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RCJ6_PHEZH
ptsN; PTS system, nitrogen regulatory IIA component ptsN
cn_combo_scaffold_664_24
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22502..23131)
DNA (630bp) protein (210aa)
Ribosomal subunit interface protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RCJ5_PHEZH
ribosomal subunit interface protein Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
ribosomal subunit interface protein
cn_combo_scaffold_664_25
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23163..23804)
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RCJ4_PHEZH
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
hypothetical protein
cn_combo_scaffold_664_26
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23890..25386)
DNA (1497bp) protein (499aa)
RNA polymerase sigma-54 factor n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RCJ3_PHEZH
rpoN; RNA polymerase factor sigma-54; K03092 RNA polymerase sigma-54 factor Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
rpoN; RNA polymerase factor sigma-54
cn_combo_scaffold_664_27
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25577..26314
DNA (738bp) protein (246aa)
Transcriptional regulator n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RCJ1_PHEZH
transcriptional regulator Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
transcriptional regulator rbh
cn_combo_scaffold_664_28
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26435..28285
DNA (1851bp) protein (617aa)
pepF; oligoendopeptidase Pe PF (EC:3.4.24.-); K08602 oligoendopeptidase F [EC:3.4.24.-] Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
Oligoendopeptidase Pe PF, putative n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9L1D7_9SPHN
oligoendopeptidase F
cn_combo_scaffold_664_29
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28311..29726)
DNA (1416bp) protein (472aa)
Na+/melibiose symporter-like transporter n=1 Tax=gamma proteobacterium HIMB55 RepID=H3NTN4_9GAMM
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
sugar transporter
Displaying items 1-30 of 69 in total

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