ggKbase home page

cn_combo_scaffold_448

Alias: SPHP32_8

Search features with annotation key words

Displaying items 1-30 of 195 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_448_1
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(79..2184)
DNA (2106bp) protein (702aa)
TonB-dependent receptor n=1 Tax=Sphingomonas sp. MM-1 RepID=M4SE37_9SPHN
TonB-dependent receptor {ECO:0000313|EMBL:KGB52709.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis s
outer membrane cobalamin receptor protein
cn_combo_scaffold_448_2
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2271..3317)
DNA (1047bp) protein (349aa)
anti-FecI sigma factor FecR n=1 Tax=Caulobacter RepID=UPI0003826929
Anti-FecI sigma factor FecR {ECO:0000313|EMBL:KGB52710.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyx
anti-FecI sigma factor FecR
cn_combo_scaffold_448_3
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3317..3718)
DNA (402bp) protein (134aa)
RNA polymerase subunit sigma-24 n=1 Tax=Caulobacter RepID=UPI000374BA69
ECF subfamily RNA polymerase sigma-24 factor {ECO:0000313|EMBL:KGB52711.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" s
ECF subfamily RNA polymerase sigma-24 factor
cn_combo_scaffold_448_4
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4139..5365)
DNA (1227bp) protein (409aa)
integrase n=1 Tax=Blastomonas sp. AAP53 RepID=UPI000319160F
phage integrase Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
phage integrase
cn_combo_scaffold_448_trna_9
unknown

Not on your lists

comp(5555..5641)
DNA (87bp)
transferRNA
cn_combo_scaffold_448_5
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5783..6850
DNA (1068bp) protein (356aa)
Lytic murein transglycosylase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UNU7_9SPHN
lytic murein transglycosylase
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
cn_combo_scaffold_448_6
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6834..7796
DNA (963bp) protein (321aa)
Rare lipoprotein A n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W9J1_9SPHN
Rare lipoprotein A {ECO:0000313|EMBL:KGB57213.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC
rare lipoprotein A
cn_combo_scaffold_448_7
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7807..9033
DNA (1227bp) protein (409aa)
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:KGB57212.1}; EC=3.4.16.4 {ECO:0000313|EMBL:KGB57212.1};; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadal
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VXZ2_9SPHN
serine-type D-Ala-D-Ala carboxypeptidase
cn_combo_scaffold_448_8
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9030..9656
DNA (627bp) protein (209aa)
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; TaxID=1174684 species="Bacteria; Proteobacteria; Alp
tmk; Thymidylate kinase (EC:2.7.4.9)
Thymidylate kinase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W8W0_9SPHN
cn_combo_scaffold_448_9
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9656..10624
DNA (969bp) protein (323aa)
DNA-directed DNA polymerase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UP46_9SPHN
DNA-directed DNA polymerase
DNA-directed DNA polymerase {ECO:0000313|EMBL:AJA08661.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyx
cn_combo_scaffold_448_10
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


11007..12581
DNA (1575bp) protein (525aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01228}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_01228};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01228}; TaxID=1174684 species="Bacteria;
metG; Methionine-tRNA ligase (EC:6.1.1.10)
Methionine--tRNA ligase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UNV2_9SPHN
cn_combo_scaffold_448_11
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12581..13357
DNA (777bp) protein (259aa)
TatD-related deoxyribonuclease n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W9J6_9SPHN
TatD-related deoxyribonuclease {ECO:0000313|EMBL:KGB51392.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingo
TatD-related deoxyribonuclease
cn_combo_scaffold_448_12
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13371..14135
DNA (765bp) protein (255aa)
Beta-lactamase-like protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GTP7_SPHAL
beta-lactamase-like protein; K06167 PhnP protein Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
beta-lactamase-like protein
cn_combo_scaffold_448_13
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14132..14311
DNA (180bp) protein (60aa)
Putative membrane protein
Putative membrane protein {ECO:0000313|EMBL:AJA08657.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis
cn_combo_scaffold_448_14
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14373..15152
DNA (780bp) protein (260aa)
MazG family protein; K04765 ATP diphosphatase [EC:3.6.1.8] Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
mazG; Nucleoside triphosphate pyrophosphohydrolase (EC:3.6.1.8)
MazG family protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GTN8_SPHAL
cn_combo_scaffold_448_15
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15308..16645)
DNA (1338bp) protein (446aa)
GTPase HflX n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UP53_9SPHN
HSR1-like GTP-binding protein; K03665 GTP-binding protein HflX Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
HSR1-like GTP-binding protein
cn_combo_scaffold_448_16
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16650..17144)
DNA (495bp) protein (165aa)
RNA-binding protein Hfq n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UNW0_9SPHN
RNA-binding protein Hfq {ECO:0000256|SAAS:SAAS00067493}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis
hfq; RNA-binding protein Hfq
cn_combo_scaffold_448_17
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17677..19056)
DNA (1380bp) protein (460aa)
Two component, sigma54 specific, Fis family transcriptional regulator n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W9K0_9SPHN
Two component, sigma54 specific, transcriptional regulator, Fis family {ECO:0000313|EMBL:KGB57201.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomon
ntrX; Nitrogen assimilation regulatory protein NtrX
cn_combo_scaffold_448_18
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19046..21337)
DNA (2292bp) protein (764aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadacea
Multi-sensor signal transduction histidine kinase n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GTN4_SPHAL
multi-sensor signal transduction histidine kinase
cn_combo_scaffold_448_19
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21454..22884)
DNA (1431bp) protein (477aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GTN3_SPHAL
two component, sigma54 specific, Fis family transcriptional regulator; K07712 two-component system, NtrC family, nitrogen regulation response regulator GlnG Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19
ntrC; Nitrogen assimilation regulatory protein
cn_combo_scaffold_448_20
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22881..23972)
DNA (1092bp) protein (364aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadacea
Signal transduction histidine kinase, nitrogen specific, NtrB n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GTN2_SPHAL
signal transduction histidine kinase, nitrogen specific, NtrB
cn_combo_scaffold_448_21
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23969..24967)
DNA (999bp) protein (333aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphing
tRNA-dihydrouridine synthase n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GTN1_SPHAL
dihydrouridine synthase TIM-barrel protein nifR3
cn_combo_scaffold_448_22
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25065..26243
DNA (1179bp) protein (393aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; K12506 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12]
ispDF; Bifunctional enzyme IspD/IspF (EC:2.7.7.60)
Bifunctional enzyme IspD/IspF n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=ISPDF_SPHAL
cn_combo_scaffold_448_23
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26246..26806
DNA (561bp) protein (187aa)
CinA-like protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GTM9_SPHAL
CinA-like protein
CinA-like protein {ECO:0000313|EMBL:ABF52993.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskens
cn_combo_scaffold_448_24
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26746..27228)
DNA (483bp) protein (161aa)
Cyclase/dehydrase n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GTM8_SPHAL
cyclase/dehydrase
Cyclase/dehydrase {ECO:0000313|EMBL:ABF52994.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskens
cn_combo_scaffold_448_25
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27231..28166)
DNA (936bp) protein (312aa)
lipoyl synthase; K03644 lipoic acid synthetase [EC:2.8.1.8] Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
Lipoyl synthase n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=LIPA_SPHAL
lipoyl synthase
cn_combo_scaffold_448_26
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28230..28886
DNA (657bp) protein (219aa)
Carbonic anhydrase {ECO:0000256|RuleBase:RU003956}; EC=4.2.1.1 {ECO:0000256|RuleBase:RU003956};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadace
Carbonic anhydrase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UNX3_9SPHN
carbonate dehydratase
cn_combo_scaffold_448_27
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29092..29550)
DNA (459bp) protein (153aa)
Thioesterase superfamily protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W8Y5_9SPHN
Thioesterase superfamily protein {ECO:0000313|EMBL:ENY80138.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphin
thioesterase superfamily protein
cn_combo_scaffold_448_28
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29573..31252)
DNA (1680bp) protein (560aa)
ABC transporter ATP-binding protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UP72_9SPHN
ABC transporter ATP-binding protein {ECO:0000313|EMBL:ENY80139.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sp
putative ABC transporter ATP-binding protein
cn_combo_scaffold_448_29
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31388..32791
DNA (1404bp) protein (468aa)
Putative peptidase M28 n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UNX8_9SPHN
Putative peptidase M28 {ECO:0000313|EMBL:KGB51462.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp
peptidase M28
Displaying items 1-30 of 195 in total

View Taxonomy