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cn_combo_scaffold_997

Alias: SPHP32_17

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Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_997_1
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..2771)
DNA (2769bp) protein (923aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase su
DNA-directed RNA polymerase subunit beta n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=RPOB_SPHAL
rpoB; DNA-directed RNA polymerase subunit beta
cn_combo_scaffold_997_2
Hyphomonadaceae bacterium BRH_c29, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3082..3615)
DNA (534bp) protein (178aa)
Peroxiredoxin n=1 Tax=Acidovorax sp. CF316 RepID=J1EGB1_9BURK
Alkyl hydroperoxide reductase {ECO:0000313|EMBL:KJS27257.1}; TaxID=1629720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae.;" source="Hyphomonadaceae bacterium
alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen
cn_combo_scaffold_997_3
BJP_08E140C01_Roseovarius_63_250, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3612..3848)
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Dinoroseobacter shibae (strain DFL 12) RepID=A8LRL2_DINSH
hypothetical protein
Tax=BJP_08E140C01_Roseovarius_63_250
cn_combo_scaffold_997_4
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4070..4675
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W4Z6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY82602.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis s
hypothetical protein
cn_combo_scaffold_997_5
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4761..5408)
DNA (648bp) protein (216aa)
TetR family transcriptional regulator n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UWH6_9SPHN
TetR family transcriptional regulator {ECO:0000313|EMBL:ENY82604.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="
TetR family transcriptional regulator
cn_combo_scaffold_997_6
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5481..6923
DNA (1443bp) protein (481aa)
Carotenoid oxygenase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UVY0_9SPHN
Carotenoid oxygenase {ECO:0000313|EMBL:ENY82605.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp.
carotenoid oxygenase
cn_combo_scaffold_997_7
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7021..8100
DNA (1080bp) protein (360aa)
Uncharacterized protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GSG0_SPHAL
Putative secreted protein
Putative secreted protein {ECO:0000313|EMBL:AJA08293.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis
cn_combo_scaffold_997_8
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(8190..8564)
DNA (375bp) protein (125aa)
50S ribosomal protein L7/L12 n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WFY6_9SPHN
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphin
rplL; 50S ribosomal protein L7/L12
cn_combo_scaffold_997_9
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(8632..9147)
DNA (516bp) protein (172aa)
50S ribosomal protein L10 n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=RL10_SPHAL
rplJ; 50S ribosomal protein L10
50S ribosomal protein L10 {ECO:0000255|HAMAP-Rule:MF_00362}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopy
cn_combo_scaffold_997_10
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9640..10233
DNA (594bp) protein (198aa)
PadR-like family transcriptional regulator n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UVY7_9SPHN
PadR-like family transcriptional regulator
PadR-like family transcriptional regulator {ECO:0000313|EMBL:AJA08289.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" sou
cn_combo_scaffold_997_11
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10245..10592
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S8R1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KGB53279.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis s
hypothetical protein
cn_combo_scaffold_997_12
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10565..13360)
DNA (2796bp) protein (932aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UPZ5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY80525.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis s
hypothetical protein
cn_combo_scaffold_997_13
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13433..14836)
DNA (1404bp) protein (468aa)
Amino acid permease-associated region n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GSF5_SPHAL
amino acid permease
Amino acid permease-associated region {ECO:0000313|EMBL:ABF53417.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="S
cn_combo_scaffold_997_14
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14901..15542)
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W9X1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY80523.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis s
hypothetical protein
cn_combo_scaffold_997_15
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15550..15837)
DNA (288bp) protein (96aa)
Putative pterin-4-alpha-carbinolamine dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; Short=PHS {ECO:0000256|HAMAP-Rule:MF_00434};; EC=4.2.1.96 {ECO:0000256|HAMAP-Rule:MF_00434};; 4-alpha-hydroxy-tetra
Putative pterin-4-alpha-carbinolamine dehydratase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VZ52_9SPHN
transcriptional coactivator/pterin dehydratase
cn_combo_scaffold_997_16
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15890..16318
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WAM5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY80521.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis s
hypothetical protein
cn_combo_scaffold_997_17
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16315..16902
DNA (588bp) protein (196aa)
ccmA; Cytochrome c biogenesis ATP-binding export protein CcmA (EC:3.6.3.41)
Heme exporter protein CcmA n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UPY9_9SPHN
Heme exporter protein CcmA {ECO:0000313|EMBL:ENY80520.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxi
cn_combo_scaffold_997_18
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17048..17695
DNA (648bp) protein (216aa)
Heme exporter protein B n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UQ89_9SPHN
Heme exporter protein B {ECO:0000256|PIRNR:PIRNR002764}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis
cytochrome c-type biogenesis protein CcmB
cn_combo_scaffold_997_19
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(17844..18539)
DNA (696bp) protein (232aa)
50S ribosomal protein L1 n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W9W4_9SPHN
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopy
rplA; 50S ribosomal protein L1
cn_combo_scaffold_997_20
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(18544..18975)
DNA (432bp) protein (144aa)
50S ribosomal protein L11 n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=RL11_SPHAL
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; S
rplK; 50S ribosomal protein L11
cn_combo_scaffold_997_21
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19136..20131)
DNA (996bp) protein (332aa)
Palmitoyl-CoA hydrolase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UPY3_9SPHN
Palmitoyl-CoA hydrolase {ECO:0000313|EMBL:ENY80515.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis s
palmitoyl-CoA hydrolase
cn_combo_scaffold_997_22
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20159..20695)
DNA (537bp) protein (179aa)
Transcription termination/antitermination protein NusG n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GT65_SPHAL
NusG antitermination factor
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomon
cn_combo_scaffold_997_23
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20734..20931)
DNA (198bp) protein (66aa)
Protein translocase subunit SecE n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GT64_SPHAL
Putative membrane protein
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
cn_combo_scaffold_997_24
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21301..21921
DNA (621bp) protein (207aa)
Type IV pilus assembly PilZ n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GTC4_SPHAL
type IV pilus assembly PilZ
Type IV pilus assembly PilZ {ECO:0000313|EMBL:KGB56950.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyx
cn_combo_scaffold_997_25
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21986..22306)
DNA (321bp) protein (107aa)
Putative multidrug resistance protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YJL2_9SPHN
Putative membrane protein
Putative membrane protein {ECO:0000313|EMBL:AJA09463.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis
cn_combo_scaffold_997_trna_2
unknown

Not on your lists

comp(22396..22468)
DNA (73bp)
transferRNA
cn_combo_scaffold_997_26
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22755..23687
DNA (933bp) protein (311aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W5S7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY82907.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis s
hypothetical protein
cn_combo_scaffold_997_27
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23684..24301
DNA (618bp) protein (206aa)
Glutathione S-transferase-like protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GRZ7_SPHAL
glutathione S-transferase-like protein
Glutathione S-transferase-like protein {ECO:0000313|EMBL:ABF53575.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="
cn_combo_scaffold_997_28
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24591..25463)
DNA (873bp) protein (291aa)
RNA polymerase sigma factor SigJ n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UWP8_9SPHN
RNA polymerase sigma factor SigJ {ECO:0000313|EMBL:ENY82870.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphin
RNA polymerase sigma factor SigJ
cn_combo_scaffold_997_29
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25463..25921)
DNA (459bp) protein (153aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadale
Alkylhydroperoxidase AhpD core n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GRF2_SPHAL
alkylhydroperoxidase AhpD core
Displaying items 1-30 of 57 in total

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