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cn_combo_scaffold_1189

Alias: SPHP32_22

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_1189_1
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(37..663)
DNA (627bp) protein (209aa)
50S ribosomal protein L4 n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=RL4_SPHAL
rplD; 50S ribosomal protein L4; K02926 large subunit ribosomal protein L4 Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
rplD; 50S ribosomal protein L4
cn_combo_scaffold_1189_2
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(666..1424)
DNA (759bp) protein (253aa)
50S ribosomal protein L3 n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W4J7_9SPHN
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sp
rplC; 50S ribosomal protein L3
cn_combo_scaffold_1189_3
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(1729..2040)
DNA (312bp) protein (104aa)
30S ribosomal protein S10 n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=RS10_SPHAL
rpsJ; 30S ribosomal protein S10
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
cn_combo_scaffold_1189_4
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2208..3398)
DNA (1191bp) protein (397aa)
Elongation factor Tu n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UVG3_9SPHN
tuf; elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacte
cn_combo_scaffold_1189_5
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3521..5593)
DNA (2073bp) protein (691aa)
Elongation factor G n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UVZ9_9SPHN
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomon
fusA; elongation factor G
cn_combo_scaffold_1189_6
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(5687..6157)
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=2 Tax=Sphingopyxis RepID=RS7_SPHAL
30S ribosomal protein S7
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
cn_combo_scaffold_1189_7
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6318..6689)
DNA (372bp) protein (124aa)
30S ribosomal protein S12 n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W4J0_9SPHN
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; S
rpsL; 30S ribosomal protein S12
cn_combo_scaffold_1189_8
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7018..7533
DNA (516bp) protein (172aa)
Uracil-DNA glycosylase superfamily protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WG80_9SPHN
Uracil-DNA glycosylase superfamily protein {ECO:0000313|EMBL:KGB55579.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" sou
hypothetical protein
cn_combo_scaffold_1189_9
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7544..8233
DNA (690bp) protein (230aa)
Pyrimidine 5-nucleotidase n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GP90_SPHAL
pyrimidine 5-nucleotidase; K07025 putative hydrolase of the HAD superfamily Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
pyrimidine 5-nucleotidase
cn_combo_scaffold_1189_10
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8230..9072
DNA (843bp) protein (281aa)
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00811}; EC=2.3.1.117 {ECO:0000256|HAMAP-Rule:MF_00811};; Tetrahydrodipicolinate N-succinyltransferase {ECO
dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC:2.3.1.117)
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WFE0_9SPHN
cn_combo_scaffold_1189_11
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9207..11300
DNA (2094bp) protein (698aa)
hypothetical protein n=1 Tax=Blastomonas sp. AAP53 RepID=UPI00030D1233
TonB-dependent receptor Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
outer membrane receptor protein
cn_combo_scaffold_1189_12
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11329..12015)
DNA (687bp) protein (229aa)
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W4I7_9SPHN
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01039, ECO:0000256|RuleBase:RU004512}; Short=BPG-dependent PGAM {ECO:0000256|HAMAP-Rule:MF_01039};; Short=PGAM {ECO
gpmA; phosphoglyceromutase
cn_combo_scaffold_1189_13
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12207..12668
DNA (462bp) protein (154aa)
Heat shock protein Hsp20 n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WG75_9SPHN
Heat shock protein Hsp20 {ECO:0000313|EMBL:ENY82451.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis
heat shock protein Hsp20
cn_combo_scaffold_1189_14
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12750..13859)
DNA (1110bp) protein (370aa)
Peptidase M14, carboxypeptidase A n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UVZ0_9SPHN
Peptidase M14, carboxypeptidase A {ECO:0000313|EMBL:ENY82449.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphi
peptidase M14, carboxypeptidase A
cn_combo_scaffold_1189_15
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13856..14659)
DNA (804bp) protein (268aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WFD5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY82448.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis s
hypothetical protein
cn_combo_scaffold_1189_16
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14749..15396)
DNA (648bp) protein (216aa)
Cell wall hydrolase, SleB n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GP83_SPHAL
cell wall hydrolase SleB
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
cn_combo_scaffold_1189_17
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15592..15975)
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WG71_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY82446.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis s
hypothetical protein
cn_combo_scaffold_1189_18
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16099..16563)
DNA (465bp) protein (155aa)
PTS IIA-like nitrogen-regulatory protein PtsN n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GP81_SPHAL
putative PTS IIA-like nitrogen-regulatory protein PtsN
Putative PTS IIA-like nitrogen-regulatory protein PtsN {ECO:0000313|EMBL:AJA11029.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingo
cn_combo_scaffold_1189_19
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16713..17285)
DNA (573bp) protein (191aa)
SSU ribosomal protein S30P / sigma 54 modulation protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GP80_SPHAL
sigma 54 modulation protein/ribosomal protein S30EA Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
sigma 54 modulation protein/ribosomal protein S30EA
cn_combo_scaffold_1189_20
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17330..18022)
DNA (693bp) protein (231aa)
DNA polymerase III subunit epsilon n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WFD2_9SPHN
DNA polymerase III subunit epsilon {ECO:0000313|EMBL:ENY82443.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sph
DNA polymerase III subunit epsilon
cn_combo_scaffold_1189_21
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18043..18666)
DNA (624bp) protein (208aa)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=1174684 species="Bacteria; P
Dephospho-CoA kinase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W4H5_9SPHN
coaE; dephospho-CoA kinase
cn_combo_scaffold_1189_22
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18663..19490)
DNA (828bp) protein (276aa)
shikimate 5-dehydrogenase; K00014 shikimate dehydrogenase [EC:1.1.1.25] Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
Shikimate dehydrogenase n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=AROE_SPHAL
shikimate 5-dehydrogenase
cn_combo_scaffold_1189_23
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19487..20086)
DNA (600bp) protein (200aa)
Maf-like protein EBMC1_06114 n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UVE1_9SPHN
Maf-like protein EBMC1_06114 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphin
maf protein
cn_combo_scaffold_1189_24
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20083..20901)
DNA (819bp) protein (273aa)
Putative pyruvate, phosphate dikinase regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921}; Short=PPDK regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.11.32 {ECO:0000256|HAMAP-Rule:MF_00
Putative pyruvate, phosphate dikinase regulatory protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UVX9_9SPHN
hypothetical protein
cn_combo_scaffold_1189_25
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21237..22265
DNA (1029bp) protein (343aa)
Uroporphyrinogen decarboxylase {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554}; Short=UPD {ECO:0000256|HAMAP-Rule:MF_00218};; Short=URO-D {ECO:0000256|HAMAP-Rule:MF_00218};; EC=4.1.1.
hemE; Uroporphyrinogen decarboxylase (EC:4.1.1.37) rbh
Uroporphyrinogen decarboxylase n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=DCUP_SPHAL
cn_combo_scaffold_1189_26
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22270..22719
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W4G9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY82437.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis s
hypothetical protein
cn_combo_scaffold_1189_27
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23097..24353
DNA (1257bp) protein (419aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=1174684 speci
rho; Transcription termination factor Rho (EC:3.6.4.-)
Transcription termination factor Rho n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WG63_9SPHN
cn_combo_scaffold_1189_28
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24363..24656
DNA (294bp) protein (98aa)
Antibiotic biosynthesis monooxygenase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UVD6_9SPHN
antibiotic biosynthesis monooxygenase; K07145 Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
antibiotic biosynthesis monooxygenase
cn_combo_scaffold_1189_29
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24653..25381
DNA (729bp) protein (243aa)
Integral membrane protein TerC n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UVX4_9SPHN
Integral membrane protein TerC {ECO:0000313|EMBL:ENY82434.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingo
integral membrane protein TerC
cn_combo_scaffold_1189_30
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25782..26252
DNA (471bp) protein (157aa)
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
Displaying items 1-30 of 45 in total

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