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cn_combo_scaffold_1973

Alias: SPHP32_34

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Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_1973_1
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..2608
DNA (2607bp) protein (869aa)
Ribonuclease E {ECO:0000256|HAMAP-Rule:MF_00970}; Short=RNase E {ECO:0000256|HAMAP-Rule:MF_00970};; EC=3.1.26.12 {ECO:0000256|HAMAP-Rule:MF_00970};; TaxID=1120705 species="Bacteria; Proteobacteria; Al
Ribonuclease E n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WAR9_9SPHN
ribonuclease
cn_combo_scaffold_1973_2
unknown

Not on your lists

comp(2772..3089)
DNA (318bp) protein (106aa)

This feature has no annotations

cn_combo_scaffold_1973_3
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3133..4530
DNA (1398bp) protein (466aa)
Peptidase M48, Ste24p n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UQ37_9SPHN
Peptidase M48, Ste24p {ECO:0000313|EMBL:ENY80565.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp.
peptidase M48, Ste24p
cn_combo_scaffold_1973_4
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4585..6174
DNA (1590bp) protein (530aa)
DSBA oxidoreductase n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GN99_SPHAL
DSBA oxidoreductase
DSBA oxidoreductase {ECO:0000313|EMBL:AJA11563.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribe
cn_combo_scaffold_1973_5
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6185..7789)
DNA (1605bp) protein (535aa)
FAD dependent oxidoreductase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UP76_9SPHN
FAD dependent oxidoreductase {ECO:0000313|EMBL:ENY80225.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopy
FAD dependent oxidoreductase
cn_combo_scaffold_1973_6
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7786..9006)
DNA (1221bp) protein (407aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UPH7_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJA11558.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis f
cn_combo_scaffold_1973_7
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9349..10719)
DNA (1371bp) protein (457aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W9X3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY80221.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis s
hypothetical protein
cn_combo_scaffold_1973_8
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10845..11501)
DNA (657bp) protein (219aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) l
nth; Endonuclease III (EC:4.2.99.18)
Endonuclease III n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W9W9_9SPHN
cn_combo_scaffold_1973_9
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11508..12236)
DNA (729bp) protein (243aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rul
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GPH0_SPHAL
dihydrodipicolinate reductase
cn_combo_scaffold_1973_10
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12347..13051
DNA (705bp) protein (235aa)
NAD-dependent deacetylase; K12410 NAD-dependent deacetylase [EC:3.5.1.-] Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
cobB; NAD-dependent protein deacylase (EC:3.5.1.-)
NAD-dependent protein deacylase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W977_9SPHN
cn_combo_scaffold_1973_11
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13073..13528)
DNA (456bp) protein (152aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonada
Zinc-binding CMP/dCMP deaminase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VYA5_9SPHN
zinc-binding CMP/dCMP deaminase
cn_combo_scaffold_1973_12
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


13659..13952
DNA (294bp) protein (98aa)
50S ribosomal protein L28 n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W9W6_9SPHN
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingop
rpmB; 50S ribosomal protein L28
cn_combo_scaffold_1973_13
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13989..14987)
DNA (999bp) protein (333aa)
Uncharacterized protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GPG6_SPHAL
Uncharacterized protein {ECO:0000313|EMBL:KGB52605.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis s
hypothetical protein
cn_combo_scaffold_1973_14
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15150..15539
DNA (390bp) protein (130aa)
17 kDa surface antigen n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GPG5_SPHAL
17 kDa surface antigen {ECO:0000313|EMBL:KGB52606.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp
17 kDa surface antigen
cn_combo_scaffold_1973_15
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15793..16836
DNA (1044bp) protein (348aa)
Ppx/GppA phosphatase; K01524 exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
Ppx/GppA phosphatase n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GPG4_SPHAL
Ppx/GppA phosphatase
cn_combo_scaffold_1973_16
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16833..17564
DNA (732bp) protein (244aa)
Ribosomal RNA large subunit methyltransferase E {ECO:0000256|HAMAP-Rule:MF_01547}; EC=2.1.1.166 {ECO:0000256|HAMAP-Rule:MF_01547};; 23S rRNA Um2552 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547};
rlmE; Ribosomal RNA large subunit methyltransferase E (EC:2.1.1.166)
Ribosomal RNA large subunit methyltransferase E n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VYA1_9SPHN
cn_combo_scaffold_1973_17
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17584..19044
DNA (1461bp) protein (487aa)
Peptidase S41 n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W9W1_9SPHN
Peptidase S41 {ECO:0000313|EMBL:ENY80206.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
peptidase S41
cn_combo_scaffold_1973_18
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19064..20770)
DNA (1707bp) protein (569aa)
Long-chain-fatty-acid--CoA ligase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WC51_9SPHN
Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:ENY81323.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphi
AMP-dependent synthetase/ligase
cn_combo_scaffold_1973_19
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20897..21871)
DNA (975bp) protein (325aa)
Putative membrane protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZWJ8_9PROT
Putative membrane protein {ECO:0000313|EMBL:EHM02646.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" sour
multidrug DMT transporter permease
cn_combo_scaffold_1973_20
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21967..22482
DNA (516bp) protein (172aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00035E4F83
AsnC family transcriptional regulator
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:ABQ67093.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="
cn_combo_scaffold_1973_trna_1
unknown

Not on your lists

22582..22653
DNA (72bp)
transferRNA
cn_combo_scaffold_1973_21
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22821..24053
DNA (1233bp) protein (411aa)
Putative integrase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IL29_9SPHN
putative integrase
Putative integrase {ECO:0000313|EMBL:BAK67581.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6
cn_combo_scaffold_1973_22
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24066..24344)
DNA (279bp) protein (93aa)
Putative AlpA family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IL30_9SPHN
putative AlpA family transcriptional regulator
Putative AlpA family transcriptional regulator {ECO:0000313|EMBL:BAK67582.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" s
cn_combo_scaffold_1973_23
Sphingobium sp. HDIP04, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24853..25161
DNA (309bp) protein (103aa)
Toxin RelE n=1 Tax=Sphingobium sp. HDIP04 RepID=T0HDT4_9SPHN
hypothetical protein
Toxin RelE {ECO:0000313|EMBL:EQA97559.1}; TaxID=428994 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. HDIP04.;"
cn_combo_scaffold_1973_24
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25139..25471
DNA (333bp) protein (111aa)
DNA-binding protein n=1 Tax=Sphingobium sp. HDIP04 RepID=T0HIZ8_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJA11166.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis f
cn_combo_scaffold_1973_25
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25647..26345
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SQY0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KHK91445.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
hypothetical protein
cn_combo_scaffold_1973_26
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26326..26892
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SQY1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCD96608.1}; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp.
hypothetical protein
cn_combo_scaffold_1973_27
Sphingobium chinhatense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26912..27127)
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. HDIP04 RepID=T0G1I4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EPR18033.1}; TaxID=1346790 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chi
hypothetical protein
cn_combo_scaffold_1973_28
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27165..27470)
DNA (306bp) protein (102aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILJ3_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67586.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingo
cn_combo_scaffold_1973_29
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27631..30549
DNA (2919bp) protein (973aa)
Conjugal transfer protein TraA n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILJ4_9SPHN
Conjugal transfer protein TraA {ECO:0000313|EMBL:KEZ16889.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobiu
conjugal transfer protein TraA
Displaying items 1-30 of 37 in total

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