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cn_combo_scaffold_2338

Alias: SPHP32_40

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_2338_1
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(384..800)
DNA (417bp) protein (139aa)
hypothetical protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC8C9
Putative uncharacterized protein Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
cn_combo_scaffold_2338_2
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

898..1554
DNA (657bp) protein (219aa)
trpF; N-(5'-phosphoribosyl)anthranilate isomerase (EC:5.3.1.24)
N-(5'-phosphoribosyl)anthranilate isomerase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9US10_9SPHN
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
cn_combo_scaffold_2338_3
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1478..2860)
DNA (1383bp) protein (461aa)
Tat twin-arginine translocation pathway signal sequence domain protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QVB4_BREDI
Tat twin-arginine translocation pathway signal sequence domain protein {ECO:0000313|EMBL:EGF96543.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobactera
glycosyl hydrolase family 109
cn_combo_scaffold_2338_4
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2954..4186
DNA (1233bp) protein (411aa)
Tryptophan synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00133}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00133};; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales
trpB; Tryptophan synthase beta chain (EC:4.2.1.20)
Tryptophan synthase beta chain n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WCP8_9SPHN
cn_combo_scaffold_2338_5
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4231..4611
DNA (381bp) protein (127aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CD10A
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
hypothetical protein
cn_combo_scaffold_2338_6
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4608..5396
DNA (789bp) protein (263aa)
Tryptophan synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|SAAS:SAAS00031177}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|SAAS:SAAS00108586};; TaxID=1120705 species="
Tryptophan synthase alpha chain n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W1A2_9SPHN
trpA; tryptophan synthase subunit alpha
cn_combo_scaffold_2338_7
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5393..6244
DNA (852bp) protein (284aa)
accD; Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta (EC:6.4.1.2)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WBY0_9SPHN
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
cn_combo_scaffold_2338_8
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

6329..6595
DNA (267bp) protein (89aa)
Excinuclease ABC C subunit domain protein n=1 Tax=Chlorobaculum parvum (strain NCIB 8327) RepID=B3QLA8_CHLP8
excinuclease ABCsubunit C domain-containing protein; K07461 putative endonuclease Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
excinuclease ABCsubunit C domain-containing protein
cn_combo_scaffold_2338_9
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6642..7958
DNA (1317bp) protein (439aa)
Dihydrofolate synthase/folylpolyglutamate synthase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9USF7_9SPHN
Dihydrofolate synthase/folylpolyglutamate synthase {ECO:0000313|EMBL:ENY81234.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxi
bifunctional folylpolyglutamate synthase/dihydrofolate synthase
cn_combo_scaffold_2338_10
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7930..9351)
DNA (1422bp) protein (474aa)
MFS permease n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WBE2_9SPHN
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:KGB51436.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sp
ampG; protein AmpG
cn_combo_scaffold_2338_11
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9478..9915)
DNA (438bp) protein (146aa)
Response regulator receiver protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W1A5_9SPHN
response regulator receiver protein
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
cn_combo_scaffold_2338_12
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10073..10903
DNA (831bp) protein (277aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomona
Pseudouridine synthase n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GU97_SPHAL
pseudouridine synthase, Rsu
cn_combo_scaffold_2338_13
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10906..11448
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9USG1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY81239.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis s
hypothetical protein
cn_combo_scaffold_2338_14
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11456..12730)
DNA (1275bp) protein (425aa)
General substrate transporter n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WCQ5_9SPHN
General substrate transporter {ECO:0000313|EMBL:KGB54160.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingop
general substrate transporter rbh
cn_combo_scaffold_2338_15
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12754..15192
DNA (2439bp) protein (813aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; S
UvrD/REP helicase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W8M0_9SPHN
UvrD/REP helicase
cn_combo_scaffold_2338_16
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15550..16608
DNA (1059bp) protein (353aa)
Aspartyl/asparaginyl beta-hydroxylase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VXR8_9SPHN
aspartyl/asparaginyl beta-hydroxylase Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
aspartyl/asparaginyl beta-hydroxylase
cn_combo_scaffold_2338_trna_1
unknown

Not on your lists

comp(16626..16698)
DNA (73bp)
transferRNA
cn_combo_scaffold_2338_17
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16790..17806
DNA (1017bp) protein (339aa)
Alcohol dehydrogenase, zinc-binding n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GUA0_SPHAL
zinc-binding alcohol dehydrogenase Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
zinc-binding alcohol dehydrogenase
cn_combo_scaffold_2338_18
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17810..19195)
DNA (1386bp) protein (462aa)
DEAD/DEAH box helicase-like protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GUA4_SPHAL
DEAD/DEAH box helicase Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
DEAD/DEAH box helicase
cn_combo_scaffold_2338_19
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19325..19957)
DNA (633bp) protein (211aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UNX5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KGB51450.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis s
hypothetical protein
cn_combo_scaffold_2338_20
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20060..21481
DNA (1422bp) protein (474aa)
FAD linked oxidase-like protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GUA6_SPHAL
FAD linked oxidase-like protein Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
FAD linked oxidase-like protein
cn_combo_scaffold_2338_21
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21594..22376
DNA (783bp) protein (261aa)
SapC n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GUA7_SPHAL
protein SapC protein
SapC {ECO:0000313|EMBL:ABF52765.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DS
cn_combo_scaffold_2338_22
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22390..22944
DNA (555bp) protein (185aa)
Cytochrome B561 n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W9C0_9SPHN
Cytochrome B561 {ECO:0000313|EMBL:ENY80051.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;
cytochrome B561
cn_combo_scaffold_2338_23
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22965..23174)
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UNN0_9SPHN
Uncharacterized protein Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
hypothetical protein
cn_combo_scaffold_2338_24
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23236..24537
DNA (1302bp) protein (434aa)
hypothetical protein; K03500 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
Fmu (Sun) n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GUA8_SPHAL
hypothetical protein
Displaying 25 items

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