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cn_combo_scaffold_3116

Alias: SPHP32_48

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_3116_1
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..1507
DNA (1506bp) protein (502aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase su
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WGM2_9SPHN
cn_combo_scaffold_3116_2
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1561..5844
DNA (4284bp) protein (1428aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01322};; RNA polymerase
DNA-directed RNA polymerase subunit beta' n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=RPOC_SPHAL
DNA-directed RNA polymerase subunit beta'
cn_combo_scaffold_3116_3
Bordetella holmesii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6297..6983
DNA (687bp) protein (229aa)
Isoprenylcysteine carboxyl methyltransferase n=1 Tax=Bordetella holmesii H558 RepID=M5P787_9BORD
Isoprenylcysteine carboxyl methyltransferase family protein {ECO:0000313|EMBL:KAK79361.1}; TaxID=1331212 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordete
isoprenylcysteine carboxyl methyltransferase family protein rbh
cn_combo_scaffold_3116_4
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7084..7263)
DNA (180bp) protein (60aa)
Phage shock protein C, PspC n=1 Tax=Sphingopyxis sp. MC1 RepID=N9US87_9SPHN
Phage shock protein C, PspC {ECO:0000313|EMBL:ENY81325.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyx
phage shock protein C, PspC
cn_combo_scaffold_3116_5
unknown

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comp(7322..7447)
DNA (126bp) protein (42aa)

This feature has no annotations

cn_combo_scaffold_3116_6
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7785..8894
DNA (1110bp) protein (370aa)
DNA replication and repair protein RecF n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GSF2_SPHAL
recF; recombination protein F; K03629 DNA replication and repair protein RecF Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
recF; recombination protein F
cn_combo_scaffold_3116_7
unknown

Not on your lists

8919..9275
DNA (357bp) protein (119aa)

This feature has no annotations

cn_combo_scaffold_3116_8
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9288..9632)
DNA (345bp) protein (115aa)
Arsenate reductase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UQP3_9SPHN
Arsenate reductase {ECO:0000313|EMBL:ENY80775.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC
arsenate reductase
cn_combo_scaffold_3116_9
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9778..10554
DNA (777bp) protein (259aa)
Twin-arginine translocation pathway signal n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GS33_SPHAL
Twin-arginine translocation pathway signal {ECO:0000313|EMBL:KGB57963.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" sou
twin-arginine translocation pathway signal
cn_combo_scaffold_3116_10
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10873..12234)
DNA (1362bp) protein (454aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WAP8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY80773.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis s
hypothetical protein
cn_combo_scaffold_3116_11
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12598..13959)
DNA (1362bp) protein (454aa)
accC; Biotin carboxylase (EC:6.3.4.14)
Acetyl-CoA carboxylase, biotin carboxylase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VZW0_9SPHN
Acetyl-CoA carboxylase, biotin carboxylase {ECO:0000313|EMBL:KGB53301.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" sou
cn_combo_scaffold_3116_12
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13968..14447)
DNA (480bp) protein (160aa)
Acetyl-CoA carboxylase, biotin carboxyl carrier protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WBC9_9SPHN
Acetyl-CoA carboxylase, biotin carboxyl carrier protein {ECO:0000313|EMBL:KGB57960.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphing
acetyl-CoA carboxylase, biotin carboxyl carrier protein
cn_combo_scaffold_3116_13
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14517..14969)
DNA (453bp) protein (151aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169,
3-dehydroquinate dehydratase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UQN8_9SPHN
3-dehydroquinate dehydratase
cn_combo_scaffold_3116_14
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15048..15248
DNA (201bp) protein (67aa)
Bifunctional sulfur carrier protein/thiazole synthase protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UR21_9SPHN
bifunctional sulfur carrier protein/thiazole synthase; K03149 thiamine biosynthesis ThiG Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
hypothetical protein
cn_combo_scaffold_3116_15
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15248..15598
DNA (351bp) protein (117aa)
hypothetical protein n=1 Tax=Deinococcus apachensis RepID=UPI000360891F
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:KGB53305.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyx
hypothetical protein
cn_combo_scaffold_3116_16
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15601..16377
DNA (777bp) protein (259aa)
Thiazole synthase {ECO:0000256|HAMAP-Rule:MF_00443}; EC=2.8.1.10 {ECO:0000256|HAMAP-Rule:MF_00443};; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomona
thiG; Thiazole synthase (EC:2.8.1.10)
Thiazole synthase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WAP3_9SPHN
cn_combo_scaffold_3116_17
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16491..17879)
DNA (1389bp) protein (463aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W337_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY81962.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis s
hypothetical protein
Displaying 17 items

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