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cn_combo_scaffold_2824

Alias: THIO1207_7

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_2824_1
Pandoraea apista, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..97)
DNA (96bp) protein (32aa)
Elongation factor Tu n=1 Tax=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) RepID=EFTU_CHRVO
tuf; translation elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=93218 species="Bacteria; Proteobacteria; Betaproteobacteria
cn_combo_scaffold_2824_trna_4
unknown

Not on your lists

comp(215..286)
DNA (72bp)
transferRNA
cn_combo_scaffold_2824_trna_3
unknown

Not on your lists

comp(325..395)
DNA (71bp)
transferRNA
cn_combo_scaffold_2824_trna_2
unknown

Not on your lists

comp(480..561)
DNA (82bp)
transferRNA
cn_combo_scaffold_2824_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(617..1708)
DNA (1092bp) protein (364aa)
GTP-binding protein YchF n=1 Tax=Thiobacillus thioparus RepID=UPI0003647F22
ychF; GTP-dependent nucleic acid-binding protein EngD; K06942 Tax=GWE1_Thiobacillus_62_9_curated
ychF; GTP-dependent nucleic acid-binding protein EngD rbh
cn_combo_scaffold_2824_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1705..2316)
DNA (612bp) protein (204aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29); K01056 peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
peptidyl-tRNA hydrolase (EC:3.1.1.29)
peptidyl-tRNA hydrolase n=1 Tax=Thiobacillus thioparus RepID=UPI00036E9A39
cn_combo_scaffold_2824_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2357..2977)
DNA (621bp) protein (207aa)
50S ribosomal protein L25 n=1 Tax=Thiobacillus thioparus RepID=UPI0003723DA9
50S ribosomal protein L25/general stress protein Ctc; K02897 large subunit ribosomal protein L25 Tax=GWE1_Thiobacillus_62_9_curated
50S ribosomal protein L25
cn_combo_scaffold_2824_5
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3070..4020)
DNA (951bp) protein (317aa)
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosph
Ribose-phosphate pyrophosphokinase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SLR5_THIDA
cn_combo_scaffold_2824_trna_1
unknown

Not on your lists

comp(4096..4167)
DNA (72bp)
transferRNA
cn_combo_scaffold_2824_6
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4185..5021)
DNA (837bp) protein (279aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000255|HAMAP-Rule:MF_00061}; Short=CMK {ECO:0000255|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000255|HAMAP-Rule:MF_00061};; 4-(cytidine-5'-dipho
4-diphosphocytidyl-2C-methyl-D-erythritol kinase n=1 Tax=Thiobacillus thioparus RepID=UPI00037E83C9
cn_combo_scaffold_2824_7
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5018..5584)
DNA (567bp) protein (189aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036AB3C9
outer membrane lipoprotein LolB; K02494 outer membrane lipoprotein LolB Tax=GWE1_Thiobacillus_62_9_curated
outer membrane lipoprotein LolB
cn_combo_scaffold_2824_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5584..7350)
DNA (1767bp) protein (589aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036EA55F
TPR repeat-containing protein Tax=GWE1_Thiobacillus_62_9_curated
TPR repeat-containing protein
cn_combo_scaffold_2824_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7430..8653)
DNA (1224bp) protein (408aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035D750D
hypothetical protein; K02004 putative ABC transport system permease protein Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
hypothetical protein
cn_combo_scaffold_2824_10
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8650..9363)
DNA (714bp) protein (238aa)
ABC-type antimicrobial peptide transport system, ATPase component (EC:3.6.3.-)
ABC transporter n=1 Tax=Thiobacillus thioparus RepID=UPI00036DFF89
antimicrobial peptide ABC transporter ATPase; K02003 putative ABC transport system ATP-binding protein Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
cn_combo_scaffold_2824_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9363..10487)
DNA (1125bp) protein (375aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000371F6CC
RND family efflux transporter MFP subunit Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RND family efflux transporter MFP subunit
cn_combo_scaffold_2824_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10484..11836)
DNA (1353bp) protein (451aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000363EDC2
Outer membrane efflux protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
outer membrane protein
cn_combo_scaffold_2824_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12015..12827
DNA (813bp) protein (271aa)
DNA-(apurinic or apyrimidinic site) lyase / formamidopyrimidine-DNA glycosylase (EC:3.2.2.23 4.2.99.18); K10563 formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] Tax=GWE1_Thiobacillus_62_9_c
DNA-(apurinic or apyrimidinic site) lyase / formamidopyrimidine-DNA glycosylase (EC:3.2.2.23 4.2.99.18)
5-hydroxymethyluracil DNA glycosylase n=1 Tax=Thiobacillus thioparus RepID=UPI00037E74E5
cn_combo_scaffold_2824_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12901..14865
DNA (1965bp) protein (655aa)
GTPase n=1 Tax=Thiobacillus thioparus RepID=UPI0003681179
hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
cn_combo_scaffold_2824_15
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15135..15386)
DNA (252bp) protein (84aa)
ferredoxin protein id=12495678 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
ferredoxin protein Tax=GWE1_Thiobacillus_62_9_curated
ferredoxin protein
cn_combo_scaffold_2824_16
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15405..15887)
DNA (483bp) protein (161aa)
phosphopantetheine adenylyltransferase (EC:2.7.7.3)
Phosphopantetheine adenylyltransferase {ECO:0000255|HAMAP-Rule:MF_00151}; EC=2.7.7.3 {ECO:0000255|HAMAP-Rule:MF_00151};; Dephospho-CoA pyrophosphorylase {ECO:0000255|HAMAP-Rule:MF_00151}; Pantetheine-
phosphopantetheine adenylyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI00036B6473
cn_combo_scaffold_2824_17
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15895..16470)
DNA (576bp) protein (192aa)
hypothetical protein; K00599 [EC:2.1.1.-] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000381BA09
hypothetical protein
cn_combo_scaffold_2824_18
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16460..17767)
DNA (1308bp) protein (436aa)
insulinase family protein; K01422 [EC:3.4.99.-] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
zinc protease n=1 Tax=Thiobacillus thioparus RepID=UPI0003693A0D
insulinase
cn_combo_scaffold_2824_19
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17757..19118)
DNA (1362bp) protein (454aa)
insulinase family protein; K01422 [EC:3.4.99.-] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
peptidase M16 n=1 Tax=Thiobacillus thioparus RepID=UPI00037810EF
insulinase
cn_combo_scaffold_2824_20
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19214..20233
DNA (1020bp) protein (340aa)
cell division protein FtsY n=1 Tax=Thiobacillus thioparus RepID=UPI00036C836F
signal recognition particle-docking protein FtsY; K03110 fused signal recognition particle receptor Tax=GWE1_Thiobacillus_62_9_curated
signal recognition particle-docking protein FtsY
cn_combo_scaffold_2824_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20230..20364
DNA (135bp) protein (45aa)
ABC transporter n=1 Tax=Thiobacillus thioparus RepID=UPI000370645D
cell division ATP-binding protein FtsE; K09812 cell division transport system ATP-binding protein Tax=GWE1_Thiobacillus_62_9_curated
cell division ATP-binding protein FtsE
Displaying 25 items

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