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cn_combo_scaffold_3645

Alias: THIO1207_17

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_3645_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..254)
DNA (252bp) protein (84aa)
taurine catabolism dioxygenase n=1 Tax=Thiobacillus thioparus RepID=UPI00036767FB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ98444.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus d
cn_combo_scaffold_3645_2
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(255..875)
DNA (621bp) protein (207aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037A9A1A
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ98443.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus d
cn_combo_scaffold_3645_3
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(878..1726)
DNA (849bp) protein (283aa)
3-mercaptopyruvate sulfurtransferase (EC:2.8.1.2)
3-mercaptopyruvate sulfurtransferase n=1 Tax=Thiobacillus thioparus RepID=UPI00038229AB
Sulfurtransferase {ECO:0000256|RuleBase:RU000507}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denit
cn_combo_scaffold_3645_4
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1812..2144)
DNA (333bp) protein (111aa)
sulfite reductase subunit gamma n=1 Tax=Thiobacillus denitrificans RepID=UPI0003822197
sulfite reductase gamma chain
Putative sulfite reductase gamma chain {ECO:0000313|EMBL:AAZ98441.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source=
cn_combo_scaffold_3645_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2199..2855)
DNA (657bp) protein (219aa)
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein id=12496402 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
cn_combo_scaffold_3645_6
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2852..3073)
DNA (222bp) protein (74aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000376705A
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
cn_combo_scaffold_3645_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3464..4765
DNA (1302bp) protein (434aa)
sulfite reductase, dissimilatory-type subunit alpha (EC:1.8.99.3); K11180 sulfite reductase, dissimilatory-type alpha subunit [EC:1.8.99.3] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
sulfite reductase, dissimilatory-type subunit alpha (EC:1.8.99.3)
sulfite reductase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003691A7A
cn_combo_scaffold_3645_8

Not on your lists

4832..5692
DNA (861bp) protein (287aa)
sulfite reductase, dissimilatory-type subunit beta (EC:1.8.99.3)
Reverse-type dissimilatory siroheme sulfite reductase subunit B (Fragment) n=1 Tax=uncultured bacterium RepID=B8PT61_9BACT
Reverse-type dissimilatory siroheme sulfite reductase subunit B {ECO:0000313|EMBL:ABX82391.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
cn_combo_scaffold_3645_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5973..6332
DNA (360bp) protein (120aa)
DsrE protein; K07235 tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-] Tax=GWE1_Thiobacillus_62_9_curated
DsrE protein id=1364810 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
DsrE protein
cn_combo_scaffold_3645_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6344..6739
DNA (396bp) protein (132aa)
sulfur oxidoreductase n=1 Tax=Thiobacillus thioparus RepID=UPI00037715B8
DsrF protein; K07236 tRNA 2-thiouridine synthesizing protein C Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
DsrF protein
cn_combo_scaffold_3645_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6750..7049
DNA (300bp) protein (100aa)
sulfur relay protein TusB/DsrH n=1 Tax=Thiobacillus thioparus RepID=UPI00037B3DCC
DsrH protein; K07237 tRNA 2-thiouridine synthesizing protein B Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
DsrH protein
cn_combo_scaffold_3645_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7073..7408
DNA (336bp) protein (112aa)
putative sulfite reductase; K11179 tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
sulfur transfer protein TusE n=1 Tax=Thiobacillus thioparus RepID=UPI00037607FD
sulfite reductase
cn_combo_scaffold_3645_13
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7590..8324
DNA (735bp) protein (245aa)
nitrate reductase n=1 Tax=Thiobacillus thioparus RepID=UPI00036B2480
putative DsrM protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
DsrM protein
cn_combo_scaffold_3645_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8375..9898
DNA (1524bp) protein (508aa)
reductase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037E2321
reductase, iron-sulfur binding subunit Tax=GWE1_Thiobacillus_62_9_curated
reductase, iron-sulfur binding subunit
cn_combo_scaffold_3645_15
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9960..11918
DNA (1959bp) protein (653aa)
glutamate synthase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037195B3
Iron-sulfur cluster-binding protein, GltD family {ECO:0000313|EMBL:AAZ98430.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.
glutamate synthase (NADPH) small subunit
cn_combo_scaffold_3645_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11933..12418
DNA (486bp) protein (162aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036BBDD8
hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
cn_combo_scaffold_3645_17
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12453..13142
DNA (690bp) protein (230aa)
iron-sulfur cluster protein; K00184 molybdopterin oxidoreductase, iron-sulfur binding subunit [EC:1.2.7.-] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
4Fe-4S ferredoxin n=1 Tax=Thiobacillus thioparus RepID=UPI000381CD7E
iron-sulfur cluster protein
cn_combo_scaffold_3645_18
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13149..14351
DNA (1203bp) protein (401aa)
molybdopterin oxidoreductase, membrane subunit; K00185 molybdopterin oxidoreductase, membrane subunit [EC:1.2.7.-] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
molybdopterin oxidoreductase n=1 Tax=Thiobacillus thioparus RepID=UPI00036F5B96
molybdopterin oxidoreductase, membrane subunit
cn_combo_scaffold_3645_19
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14395..15816
DNA (1422bp) protein (474aa)
hydrogenobyrinic acid a,c-diamide synthase / cobyrinate a,c-diamide synthase (EC:6.3.5.9 6.3.5.-); K02224 cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11] Tax=RIFOXYA1_FULL_Hydrogenophilales_
hydrogenobyrinic acid a,c-diamide synthase / cobyrinate a,c-diamide synthase (EC:6.3.5.9 6.3.5.-)
hydrogenase expression protein HypE n=1 Tax=Thiobacillus thioparus RepID=UPI00035C9F15
cn_combo_scaffold_3645_20
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15836..16171
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036EDC73
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
cn_combo_scaffold_3645_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16177..17616
DNA (1440bp) protein (480aa)
uroporphyrinogen-III C-methyltransferase (EC:2.1.1.107); K02302 uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4] Tax=
uroporphyrinogen-III C-methyltransferase (EC:2.1.1.107)
sirohydrochlorin ferrochelatase n=1 Tax=Thiobacillus thioparus RepID=UPI00037E0442
cn_combo_scaffold_3645_22
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17666..19471)
DNA (1806bp) protein (602aa)
sodium:proton antiporter n=1 Tax=Thiobacillus thioparus RepID=UPI000363A4E4
putative efflux pump/antiporter; K03455 monovalent cation:H+ antiporter-2, CPA2 family Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
efflux pump/antiporter
cn_combo_scaffold_3645_23
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19523..23233
DNA (3711bp) protein (1237aa)
pyruvate:ferredoxin (flavodoxin) oxidoreductase; K03737 putative pyruvate-flavodoxin oxidoreductase [EC:1.2.7.-] Tax=GWE1_Thiobacillus_62_9_curated
pyruvate-flavodoxin oxidoreductase n=1 Tax=Thiobacillus thioparus RepID=UPI00036026B7
pyruvate:ferredoxin (flavodoxin) oxidoreductase
cn_combo_scaffold_3645_24
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23235..24251
DNA (1017bp) protein (339aa)
dihydroorotate dehydrogenase 2 (EC:1.3.3.1); K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1] Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
dihydroorotate dehydrogenase 2 (EC:1.3.3.1)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036FB359
cn_combo_scaffold_3645_25
Pseudomonas sp. MRSN12121, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24323..24622
DNA (300bp) protein (100aa)
NhaP-type Na+(K+)/H+ antiporter n=1 Tax=Pseudomonas sp. GM17 RepID=J3E8K4_9PSED
sodium:proton antiporter
Uncharacterized protein {ECO:0000313|EMBL:AJO76778.1}; TaxID=1611770 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. M
cn_combo_scaffold_3645_26
unknown

Not on your lists

24685..24783
DNA (99bp) protein (33aa)

This feature has no annotations

cn_combo_scaffold_3645_27
unknown

Not on your lists

24780..24986
DNA (207bp) protein (69aa)

This feature has no annotations

cn_combo_scaffold_3645_28
R_Curvibacter_63_18, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25049..26800)
DNA (1752bp) protein (584aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003689E68
diguanylate cyclase Tax=RIFCSPHIGHO2_12_FULL_Curvibacter_63_18_curated
diguanylate cyclase
cn_combo_scaffold_3645_29
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26797..27852)
DNA (1056bp) protein (352aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037C3E65
extracellular solute-binding protein; K02055 putative spermidine/putrescine transport system substrate-binding protein Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
extracellular solute-binding protein
cn_combo_scaffold_3645_30
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27955..28080)
DNA (126bp) protein (42aa)
LuxR family transcriptional regulator n=1 Tax=Thiobacillus thioparus RepID=UPI0003650186
two component LuxR family transcriptional regulator; K07684 two-component system, NarL family, nitrate/nitrite response regulator NarL Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
LuxR family transcriptional regulator
Displaying 30 items

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