ggKbase home page
Advanced Search
Search Help

CN-SCN_Thiobacillus_1177x

CN-SCN_Hydrogenophilales_63_1145
In projects: CN-SCN

Consensus taxonomy: Hydrogenophilales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: CN-SCN_Unknown

Properties

Avg. coverage: 1145.41 Longest contig: 44.94 Kbp Bin length: 1.81 Mbp GC content: 63.32 %
Contigs count: 190 Features count: 2040 rRNAs count: 0 tRNAs count: 11

Genome completeness

partial RP 13 / 55 MC: 2 BSCG 12 / 51 MC: 2 ASCG 4 / 38

Description

Partial multiple 15

Displaying items 101-150 of 190 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_4813 THIO1207_26
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
18 18520 bp 63.57 865.36 91.21
cn_combo_scaffold_26384 THIO1207_168
Order: Hydrogenophilales (50%)
6 5063 bp 66.07 1331.05 91.01
cn_combo_scaffold_12071 THIO1207_90
Genus: Pseudomonas (83.33%)
6 5284 bp 61.30 1163.34 91.01
cn_combo_scaffold_28381 THIO1207_175
Order: Hydrogenophilales (63.64%)
11 7784 bp 66.12 1163.51 90.96
cn_combo_scaffold_20795 THIO1207_141
Order: Hydrogenophilales (60%)
5 6013 bp 59.24 1018.14 90.85
cn_combo_scaffold_36675 THIO1207_189
Species: GWE1_Thiobacillus_62_9_curated (62.5%)
8 5105 bp 66.13 1202.72 90.79
cn_combo_scaffold_5093 THIO1207_32
Order: Hydrogenophilales (93.33%)
15 11559 bp 62.33 1060.38 90.73
cn_combo_scaffold_4803 THIO1207_24
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (61.54%)
13 12264 bp 60.62 1021.24 90.73
cn_combo_scaffold_23707 THIO1207_159
Species: GWE1_Thiobacillus_62_9_curated (50%)
8 5109 bp 67.12 1387.79 90.66
cn_combo_scaffold_21079 THIO1207_142
Species: GWE1_Thiobacillus_62_9_curated (60%)
5 5712 bp 69.35 1498.06 90.28
cn_combo_scaffold_20213 THIO1207_139
Phylum: Proteobacteria (77.78%)
9 9238 bp 61.40 1313.20 90.28
cn_combo_scaffold_16092 THIO1207_122
Order: Hydrogenophilales (70%)
10 6548 bp 64.83 1410.05 90.04
cn_combo_scaffold_9784 THIO1207_68
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
6 6447 bp 63.36 1011.62 90.04
cn_combo_scaffold_23626 THIO1207_158
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
9 7385 bp 62.83 809.22 90.02
cn_combo_scaffold_21803 THIO1207_146
Order: Hydrogenophilales (63.64%)
11 7161 bp 63.20 1490.00 89.95
cn_combo_scaffold_35066 THIO1207_183
Order: Hydrogenophilales (60%)
5 5588 bp 66.05 1201.41 89.87
cn_combo_scaffold_27145 THIO1207_170
Order: Hydrogenophilales (77.78%)
9 7603 bp 67.33 1148.81 89.85
cn_combo_scaffold_19801 THIO1207_134
Order: Burkholderiales (50%)
8 6799 bp 63.23 1320.21 89.66
cn_combo_scaffold_10990 THIO1207_83
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (80%)
10 5772 bp 62.02 1014.28 89.66
cn_combo_scaffold_22879 THIO1207_151
Order: Hydrogenophilales (57.14%)
7 6195 bp 65.10 1413.62 89.22
cn_combo_scaffold_33248 THIO1207_181
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
10 6753 bp 63.47 1327.37 89.12
cn_combo_scaffold_12315 THIO1207_93
Order: Hydrogenophilales (83.33%)
6 5190 bp 64.01 1037.71 89.08
cn_combo_scaffold_9101 THIO1207_62
Class: Betaproteobacteria (54.55%)
11 11346 bp 61.95 1196.25 89.05
cn_combo_scaffold_19773 THIO1207_133
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (62.5%)
8 5498 bp 65.31 1214.13 88.94
cn_combo_scaffold_14723 THIO1207_114
Species: Thioalkalivibrio sulfidiphilus (71.43%)
7 6625 bp 61.36 1440.21 88.94
cn_combo_scaffold_42617 THIO1207_194
Species: GWE1_Thiobacillus_62_9_curated (50%)
6 5675 bp 64.32 1070.66 88.92
cn_combo_scaffold_20779 THIO1207_140
Species: GWE1_Thiobacillus_62_9_curated (62.5%)
8 5549 bp 67.08 844.76 88.88
cn_combo_scaffold_12908 THIO1207_191a
Order: Hydrogenophilales (57.14%)
7 8848 bp 68.92 1627.08 88.73
cn_combo_scaffold_3436 THIO1207_15
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (76.47%)
17 19305 bp 62.46 1029.69 88.47
cn_combo_scaffold_10727 THIO1207_81
Phylum: Proteobacteria (75%)
8 5911 bp 56.79 1145.95 88.31
cn_combo_scaffold_6550 THIO1207_41
Order: Hydrogenophilales (58.82%)
17 17256 bp 63.53 1358.04 88.30
cn_combo_scaffold_12085 THIO1207_91
Order: Hydrogenophilales (100%)
6 6808 bp 63.34 828.11 88.18
cn_combo_scaffold_5008 THIO1207_31
Class: Betaproteobacteria (70.59%)
17 15243 bp 62.35 1482.71 88.03
cn_combo_scaffold_12197 THIO1207_92
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (71.43%)
7 5744 bp 62.95 1027.91 88.00
cn_combo_scaffold_13454 THIO1207_105
Order: Hydrogenophilales (91.67%)
12 10791 bp 67.13 1366.17 87.93
cn_combo_scaffold_4919 THIO1207_30
Order: Hydrogenophilales (100%)
13 11935 bp 62.85 990.08 87.80
cn_combo_scaffold_9178 THIO1207_64
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
8 8355 bp 63.99 819.44 87.76
cn_combo_scaffold_8167 THIO1207_53
Class: Betaproteobacteria (50%)
6 7623 bp 63.52 1188.85 87.64
cn_combo_scaffold_9883 THIO1207_70
Species: GWE1_Thiobacillus_62_9_curated (50%)
10 8098 bp 56.58 1334.12 87.61
cn_combo_scaffold_20181 THIO1207_138
Order: Hydrogenophilales (100%)
8 7703 bp 67.03 1250.20 87.43
cn_combo_scaffold_22234 THIO1207_149
Genus: Sulfuricella (71.43%)
7 5033 bp 67.24 1576.04 87.26
cn_combo_scaffold_35648 THIO1207_188
Order: Hydrogenophilales (100%)
8 7539 bp 69.86 1463.56 86.83
cn_combo_scaffold_7213 THIO1207_47
Order: Hydrogenophilales (87.5%)
8 8492 bp 63.95 1122.35 86.80
cn_combo_scaffold_25332 THIO1207_166
Species: GWE1_Thiobacillus_62_9_curated (50%)
6 6586 bp 67.11 1397.60 86.50
cn_combo_scaffold_35046 THIO1207_185
Species: GWE1_Thiobacillus_62_9_curated (53.85%)
13 9491 bp 66.28 1321.58 86.45
cn_combo_scaffold_17056 THIO1207_126
Species: Thioalkalivibrio sulfidiphilus (50%)
8 8931 bp 59.09 1131.05 85.86
cn_combo_scaffold_12598 THIO1207_98
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (87.5%)
8 5084 bp 64.95 817.37 85.80
cn_combo_scaffold_27784 THIO1207_172
Species: GWE1_Thiobacillus_62_9_curated (71.43%)
7 5678 bp 69.23 1233.83 85.75
cn_combo_scaffold_4851 THIO1207_27
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
14 12139 bp 62.95 980.07 85.61
cn_combo_scaffold_11144 THIO1207_85
Class: Betaproteobacteria (60%)
10 8434 bp 64.60 1329.50 85.52
Displaying items 101-150 of 190 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.