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CN-SCN_Thiobacillus_1177x

CN-SCN_Hydrogenophilales_63_1145
In projects: CN-SCN

Consensus taxonomy: Hydrogenophilales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: CN-SCN_Unknown

Properties

Avg. coverage: 1145.41 Longest contig: 44.94 Kbp Bin length: 1.81 Mbp GC content: 63.32 %
Contigs count: 190 Features count: 2040 rRNAs count: 0 tRNAs count: 11

Genome completeness

partial RP 13 / 55 MC: 2 BSCG 12 / 51 MC: 2 ASCG 4 / 38

Description

Partial multiple 15

Displaying items 1-50 of 190 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_20002 THIO1207_136
Species: Thiobacillus denitrificans (50%)
6 5277 bp 67.29 1434.98 68.11
cn_combo_scaffold_48891 THIO1207_195
Order: Hydrogenophilales (100%)
7 5035 bp 68.18 1128.74 71.50
cn_combo_scaffold_26893 THIO1207_169
Species: GWE1_Thiobacillus_62_9_curated (50%)
6 5077 bp 63.36 1597.68 72.56
cn_combo_scaffold_14833 THIO1207_115
Order: Hydrogenophilales (54.55%)
11 8473 bp 62.20 1508.76 74.14
cn_combo_scaffold_34109 THIO1207_182
Species: GWE1_Thiobacillus_62_9_curated (57.14%)
7 6829 bp 63.48 1539.08 74.59
cn_combo_scaffold_20086 THIO1207_137
Class: Betaproteobacteria (61.54%)
13 8923 bp 63.99 1247.48 76.82
cn_combo_scaffold_42566 THIO1207_193
Order: Hydrogenophilales (77.78%)
9 7728 bp 65.76 1395.16 78.22
cn_combo_scaffold_23127 THIO1207_155
Order: Hydrogenophilales (88.89%)
9 7153 bp 67.01 1443.46 80.06
cn_combo_scaffold_8803 THIO1207_58
Class: Betaproteobacteria (83.33%)
6 7146 bp 63.13 1209.36 80.23
cn_combo_scaffold_24762 THIO1207_165
Species: GWE1_Thiobacillus_62_9_curated (50%)
8 7143 bp 63.89 1090.38 80.47
cn_combo_scaffold_14581 THIO1207_111
Order: Hydrogenophilales (66.67%)
9 7608 bp 62.80 1240.21 80.56
cn_combo_scaffold_19165 THIO1207_131
Species: Comamonadaceae bacterium A1 (55.56%)
9 6230 bp 62.05 1403.02 80.75
cn_combo_scaffold_21977 THIO1207_147
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (62.5%)
16 13369 bp 62.70 941.63 81.48
cn_combo_scaffold_28328 THIO1207_173
Phylum: Proteobacteria (66.67%)
9 6943 bp 60.81 1161.75 82.01
cn_combo_scaffold_24690 THIO1207_164
Order: Hydrogenophilales (85.71%)
7 5060 bp 67.79 997.15 82.23
cn_combo_scaffold_7625 THIO1207_50
Order: Hydrogenophilales (64.29%)
14 8094 bp 61.34 1074.80 82.36
cn_combo_scaffold_13279 THIO1207_104
Class: Betaproteobacteria (66.67%)
9 6508 bp 52.77 1114.32 83.11
cn_combo_scaffold_5795 THIO1207_35
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
14 12201 bp 61.55 809.79 83.40
cn_combo_scaffold_6324 THIO1207_39
Species: GWE1_Thiobacillus_62_9_curated (57.14%)
14 13226 bp 64.68 806.62 83.45
cn_combo_scaffold_14417 THIO1207_109
Order: Hydrogenophilales (66.67%)
9 5495 bp 62.40 1399.84 83.48
cn_combo_scaffold_6151 THIO1207_38
Order: Hydrogenophilales (64.29%)
14 12127 bp 61.06 1386.89 83.89
cn_combo_scaffold_9120 THIO1207_63
Order: Hydrogenophilales (100%)
7 6895 bp 62.48 1082.97 84.06
cn_combo_scaffold_8408 THIO1207_55
Phylum: Proteobacteria (90%)
10 8361 bp 51.91 1351.23 84.18
cn_combo_scaffold_7424 THIO1207_48
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
8 8285 bp 60.78 1024.63 84.37
cn_combo_scaffold_12751 THIO1207_99
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
9 5035 bp 61.15 904.89 84.43
cn_combo_scaffold_13185 THIO1207_102
Species: GWE1_Thiobacillus_62_9_curated (83.33%)
12 11619 bp 62.52 1828.08 84.46
cn_combo_scaffold_14350 THIO1207_108
Species: RBG_16_Gallionellales_57_15_curated (50%)
4 6300 bp 57.46 1345.38 84.48
cn_combo_scaffold_15956 THIO1207_121
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
9 7225 bp 63.65 1154.02 84.58
cn_combo_scaffold_22887 THIO1207_153
Order: Hydrogenophilales (71.43%)
7 6689 bp 68.11 1658.45 84.59
cn_combo_scaffold_10047 THIO1207_72
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (60%)
10 6869 bp 61.22 1019.00 84.64
cn_combo_scaffold_4611 THIO1207_21
Class: Betaproteobacteria (57.14%)
14 14451 bp 57.82 840.33 84.66
cn_combo_scaffold_15020 THIO1207_116
Order: Hydrogenophilales (100%)
7 5585 bp 63.28 813.61 84.71
cn_combo_scaffold_22900 THIO1207_152
Order: Hydrogenophilales (56.25%)
16 12021 bp 62.47 1109.82 84.78
cn_combo_scaffold_14564 THIO1207_110
Species: GWE1_Thiobacillus_62_9_curated (63.64%)
11 11894 bp 61.53 1160.09 84.82
cn_combo_scaffold_3646 THIO1207_18 23 16726 bp 62.50 1251.83 84.86
cn_combo_scaffold_5408 THIO1207_33
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (54.55%)
11 10962 bp 63.50 1022.91 84.92
cn_combo_scaffold_13284 THIO1207_103
Species: GWE1_Thiobacillus_62_9_curated (50%)
6 5886 bp 62.30 1049.93 85.12
cn_combo_scaffold_15577 THIO1207_118
Class: Betaproteobacteria (100%)
9 6494 bp 61.98 1070.23 85.32
cn_combo_scaffold_17533 THIO1207_130
Phylum: Proteobacteria (80%)
10 9882 bp 69.38 1128.03 85.40
cn_combo_scaffold_21655 THIO1207_144
Phylum: Proteobacteria (71.43%)
7 7674 bp 60.54 1048.91 85.50
cn_combo_scaffold_11144 THIO1207_85
Class: Betaproteobacteria (60%)
10 8434 bp 64.60 1329.50 85.52
cn_combo_scaffold_4851 THIO1207_27
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
14 12139 bp 62.95 980.07 85.61
cn_combo_scaffold_27784 THIO1207_172
Species: GWE1_Thiobacillus_62_9_curated (71.43%)
7 5678 bp 69.23 1233.83 85.75
cn_combo_scaffold_12598 THIO1207_98
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (87.5%)
8 5084 bp 64.95 817.37 85.80
cn_combo_scaffold_17056 THIO1207_126
Species: Thioalkalivibrio sulfidiphilus (50%)
8 8931 bp 59.09 1131.05 85.86
cn_combo_scaffold_35046 THIO1207_185
Species: GWE1_Thiobacillus_62_9_curated (53.85%)
13 9491 bp 66.28 1321.58 86.45
cn_combo_scaffold_25332 THIO1207_166
Species: GWE1_Thiobacillus_62_9_curated (50%)
6 6586 bp 67.11 1397.60 86.50
cn_combo_scaffold_7213 THIO1207_47
Order: Hydrogenophilales (87.5%)
8 8492 bp 63.95 1122.35 86.80
cn_combo_scaffold_35648 THIO1207_188
Order: Hydrogenophilales (100%)
8 7539 bp 69.86 1463.56 86.83
cn_combo_scaffold_22234 THIO1207_149
Genus: Sulfuricella (71.43%)
7 5033 bp 67.24 1576.04 87.26
Displaying items 1-50 of 190 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.