ggKbase home page

cn_combo_scaffold_1556

Alias: NITRO20_10

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_1556_1
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..807)
DNA (807bp) protein (269aa)
AMP-dependent synthetase and ligase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCW7_NITMU
AMP-dependent synthetase and ligase
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ABB73404.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitr
cn_combo_scaffold_1556_2
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(928..3267)
DNA (2340bp) protein (780aa)
fadE; acyl-CoA dehydrogenase (EC:1.3.99.3)
Acyl-CoA dehydrogenase-like protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCW8_NITMU
Acyl-CoA dehydrogenase-like protein {ECO:0000313|EMBL:ABB73403.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitr
cn_combo_scaffold_1556_3
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3338..3694)
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCW9_NITMU
transport-associated protein
Uncharacterized protein {ECO:0000313|EMBL:ABB73402.1}; Flags: Precursor;; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" sourc
cn_combo_scaffold_1556_4
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3756..4679)
DNA (924bp) protein (308aa)
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase (EC:2.5.1.75)
tRNA dimethylallyltransferase {ECO:0000255|HAMAP-Rule:MF_00185}; EC=2.5.1.75 {ECO:0000255|HAMAP-Rule:MF_00185};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000255|HAMAP-Rule:MF_0018
tRNA dimethylallyltransferase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=MIAA_NITMU
cn_combo_scaffold_1556_5
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4982..6136
DNA (1155bp) protein (385aa)
3-deoxy-7-phosphoheptulonate synthase (EC:2.5.1.54) rbh
3-deoxy-7-phosphoheptulonate synthase {ECO:0000313|EMBL:ABB73400.1}; EC=2.5.1.54 {ECO:0000313|EMBL:ABB73400.1};; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; N
3-deoxy-7-phosphoheptulonate synthase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCX1_NITMU
cn_combo_scaffold_1556_6
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6259..7281
DNA (1023bp) protein (341aa)
Periplasmic binding protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCX2_NITMU
periplasmic binding protein
Periplasmic binding protein {ECO:0000313|EMBL:ABB73399.1}; Flags: Precursor;; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" s
cn_combo_scaffold_1556_7
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7539..8498
DNA (960bp) protein (320aa)
ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2) rbh
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxI
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCX3_NITMU
cn_combo_scaffold_1556_8
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8762..9250
DNA (489bp) protein (163aa)
phosphatase kdsC (EC:3.1.3.45) rbh
Phosphatase kdsC {ECO:0000313|EMBL:ABB73397.1}; EC=3.1.3.45 {ECO:0000313|EMBL:ABB73397.1};; Flags: Precursor;; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nit
Phosphatase kdsC n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCX4_NITMU
cn_combo_scaffold_1556_9
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9247..9822
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCX5_NITMU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB73396.1}; Flags: Precursor;; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" sourc
cn_combo_scaffold_1556_10
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9806..10378
DNA (573bp) protein (191aa)
OstA-like protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCX6_NITMU
OstA-like protein rbh
Lipopolysaccharide export system protein LptA {ECO:0000256|HAMAP-Rule:MF_01914}; Flags: Precursor;; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadac
cn_combo_scaffold_1556_11
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10391..11197
DNA (807bp) protein (269aa)
ABC transporter related protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCX7_NITMU
ABC transporter-like protein
ABC transporter related protein {ECO:0000313|EMBL:ABB73394.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosos
cn_combo_scaffold_1556_12
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11248..12714
DNA (1467bp) protein (489aa)
RNA polymerase sigma-54 factor n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCX8_NITMU
sigma-54 (RpoN)
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitroso
cn_combo_scaffold_1556_13
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12743..13045
DNA (303bp) protein (101aa)
SSU ribosomal protein S30P n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCX9_NITMU
sigma 54 modulation protein/ribosomal protein S30EA
SSU ribosomal protein S30P {ECO:0000313|EMBL:ABB73392.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira
cn_combo_scaffold_1556_14
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13225..14169
DNA (945bp) protein (315aa)
HPr kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058411}; Short=HPrK/P {ECO:0000256|HAMAP-Rule:MF_01249};; EC=2.7.11.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SA
HPr kinase/phosphorylase n=2 Tax=Nitrosospira multiformis RepID=Q2YCY0_NITMU
HPr kinase/phosphorylase
cn_combo_scaffold_1556_15
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14257..15096
DNA (840bp) protein (280aa)
UPF0042 nucleotide-binding protein Nmul_A0081 n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Y081_NITMU
hypothetical protein
Nucleotide-binding protein Nmul_A0081 {ECO:0000255|HAMAP-Rule:MF_00636}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source
cn_combo_scaffold_1556_16
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15253..15816
DNA (564bp) protein (188aa)
Aromatic acid decarboxylase {ECO:0000256|RuleBase:RU362054}; EC=4.1.1.- {ECO:0000256|RuleBase:RU362054};; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosom
3-octaprenyl-4-hydroxybenzoate carboxy-lyase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCY2_NITMU
aromatic acid decarboxylase
cn_combo_scaffold_1556_17
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15861..16514)
DNA (654bp) protein (218aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales
5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCY3_NITMU
5-formyltetrahydrofolate cyclo-ligase
cn_combo_scaffold_1556_18
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16539..17690)
DNA (1152bp) protein (384aa)
A/G-specific DNA-adenine glycosylase {ECO:0000313|EMBL:ABB73387.1}; EC=3.2.2.- {ECO:0000313|EMBL:ABB73387.1};; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nit
A/G-specific DNA-adenine glycosylase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCY4_NITMU
A/G-specific adenine glycosylase
cn_combo_scaffold_1556_19
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17690..19216)
DNA (1527bp) protein (509aa)
AsmA n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCY5_NITMU
AsmA
AsmA {ECO:0000313|EMBL:ABB73386.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain AT
cn_combo_scaffold_1556_trna_1
unknown

Not on your lists

comp(19232..19302)
DNA (71bp)
transferRNA
cn_combo_scaffold_1556_20
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19898..20692
DNA (795bp) protein (265aa)
Thiazole synthase {ECO:0000255|HAMAP-Rule:MF_00443}; EC=2.8.1.10 {ECO:0000255|HAMAP-Rule:MF_00443};; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonada
Thiazole synthase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=THIG_NITMU
thiG; thiazole synthase rbh
cn_combo_scaffold_1556_21
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20741..21430
DNA (690bp) protein (230aa)
trmB; tRNA (guanine-N(7)-)-methyltransferase (EC:2.1.1.33)
tRNA (guanine-N(7)-)-methyltransferase {ECO:0000255|HAMAP-Rule:MF_01057}; EC=2.1.1.33 {ECO:0000255|HAMAP-Rule:MF_01057};; tRNA (guanine(46)-N(7))-methyltransferase {ECO:0000255|HAMAP-Rule:MF_01057}; t
tRNA (guanine-N(7)-)-methyltransferase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=TRMB_NITMU
cn_combo_scaffold_1556_22
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21446..22672)
DNA (1227bp) protein (409aa)
Coproporphyrinogen III oxidase, anaerobic {ECO:0000313|EMBL:ABB73377.1}; EC=1.3.99.22 {ECO:0000313|EMBL:ABB73377.1};; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadal
Coproporphyrinogen III oxidase, anaerobic n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCZ4_NITMU
coproporphyrinogen III oxidase
cn_combo_scaffold_1556_23
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(22787..23380)
DNA (594bp) protein (198aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard p
Non-canonical purine NTP pyrophosphatase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCZ5_NITMU
putative deoxyribonucleotide triphosphate pyrophosphatase
cn_combo_scaffold_1556_24
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23387..24103)
DNA (717bp) protein (239aa)
ribonuclease PH (EC:2.7.7.56)
Ribonuclease PH {ECO:0000255|HAMAP-Rule:MF_00564}; Short=RNase PH {ECO:0000255|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000255|HAMAP-Rule:MF_00564};; tRNA nucleotidyltransferase {ECO:0000255|HAMAP-Rul
Ribonuclease PH n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=RNPH_NITMU
cn_combo_scaffold_1556_25
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24287..25168
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCZ7_NITMU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB73374.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira mul
cn_combo_scaffold_1556_26
GWA2_Deltaproteobacteria_65_63_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25766..25996
DNA (231bp) protein (77aa)
Uncharacterized protein id=1700079 bin=GWB2_Deltaproteobacteria_65_81 species=mine drainage metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_Deltaproteobacteria_65_81 organism_group=Deltaproteobacteria organism_desc=Good +
hypothetical protein Tax=GWA2_Deltaproteobacteria_65_63_curated
hypothetical protein
cn_combo_scaffold_1556_27
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25993..26367
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHY1_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU62008.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira la
hypothetical protein
cn_combo_scaffold_1556_28
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26495..26935
DNA (441bp) protein (147aa)
Thioredoxin n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YD09_NITMU
thioredoxin
Thioredoxin {ECO:0000313|EMBL:ABB73362.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (st
cn_combo_scaffold_1556_29
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27180..27812
DNA (633bp) protein (211aa)
gmk; guanylate kinase (EC:2.7.4.8)
Guanylate kinase {ECO:0000255|HAMAP-Rule:MF_00328}; EC=2.7.4.8 {ECO:0000255|HAMAP-Rule:MF_00328};; GMP kinase {ECO:0000255|HAMAP-Rule:MF_00328}; TaxID=323848 species="Bacteria; Proteobacteria; Betapro
Guanylate kinase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=KGUA_NITMU
Displaying items 1-30 of 32 in total

View Taxonomy