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cn_combo_scaffold_1942

Alias: NITRO20_25

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_1942_1
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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2..958
DNA (957bp) protein (319aa)
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosph
Ribose-phosphate pyrophosphokinase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YBH4_NITMU
cn_combo_scaffold_1942_2
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1114..1800
DNA (687bp) protein (229aa)
50S ribosomal protein L25 n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=RL25_NITMU
50S ribosomal protein L25/general stress protein Ctc rbh
50S ribosomal protein L25 {ECO:0000255|HAMAP-Rule:MF_01334}; General stress protein CTC {ECO:0000255|HAMAP-Rule:MF_01334}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomo
cn_combo_scaffold_1942_3
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2114..2689
DNA (576bp) protein (192aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29) rbh
Peptidyl-tRNA hydrolase {ECO:0000255|HAMAP-Rule:MF_00083}; Short=PTH {ECO:0000255|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000255|HAMAP-Rule:MF_00083};; TaxID=323848 species="Bacteria; Proteobacteria;
Peptidyl-tRNA hydrolase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=PTH_NITMU
cn_combo_scaffold_1942_4
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2917..4020
DNA (1104bp) protein (368aa)
Ribosome-binding ATPase YchF n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YBH1_NITMU
ychF; GTP-dependent nucleic acid-binding protein EngD rbh
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitroso
cn_combo_scaffold_1942_5
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4212..5483
DNA (1272bp) protein (424aa)
integrase n=1 Tax=Pseudomonas fluorescens RepID=UPI00037D0E4C
Integrase {ECO:0000313|EMBL:EXF95631.1}; TaxID=1042209 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens HK44.;"
integrase
cn_combo_scaffold_1942_6
Xenorhabdus bovienii, Xenorhabdus, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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5578..6366
DNA (789bp) protein (263aa)
Uncharacterized protein n=1 Tax=Providencia rettgeri Dmel1 RepID=K8WJ60_PRORE
Uncharacterized protein {ECO:0000313|EMBL:CDH24584.1}; TaxID=1398204 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Xenorhabdus.;" source="Xenorhabdus b
hypothetical protein
cn_combo_scaffold_1942_7

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6468..6677
DNA (210bp) protein (70aa)
Transcriptional regulator n=1 Tax=sediment metagenome RepID=D9PIP2_9ZZZZ
Transcriptional regulator {ECO:0000313|EMBL:EFK96569.1}; TaxID=749907 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="sediment metagenome.;"
hypothetical protein
cn_combo_scaffold_1942_8
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

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6869..9427
DNA (2559bp) protein (853aa)
DNA primase TraC {ECO:0000313|EMBL:EXI84588.1}; EC=2.7.7.- {ECO:0000313|EMBL:EXI84588.1};; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Can
Uncharacterized protein n=1 Tax=Nitrosomonas eutropha (strain C91) RepID=Q0AH06_NITEC
hypothetical protein
cn_combo_scaffold_1942_9
unknown

Not on your lists

9424..9918
DNA (495bp) protein (165aa)

This feature has no annotations

cn_combo_scaffold_1942_10
Nitrosomonas sp. Is79A3, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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10006..10278
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GH17_NITSI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEJ02499.1}; TaxID=261292 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas sp.
cn_combo_scaffold_1942_11
unknown

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10275..10460
DNA (186bp) protein (62aa)

This feature has no annotations

cn_combo_scaffold_1942_12
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

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10629..12083
DNA (1455bp) protein (485aa)
Site-specific DNA-methyltransferase (Adenine-specific) n=1 Tax=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) RepID=D5SQL2_PLAL2
Site-specific DNA-methyltransferase (Adenine-specific) {ECO:0000313|EMBL:CDI01451.1}; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter
adenine-specific DNA-methyltransferase
cn_combo_scaffold_1942_13
Methylotenera versatilis, Methylotenera, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12080..13315
DNA (1236bp) protein (412aa)
Restriction modification system DNA specificity domain protein n=1 Tax=Methylotenera sp. (strain 301) RepID=D7DJD4_METS0
restriction modification system DNA specificity domain-containing protein
Restriction modification system DNA specificity domain protein {ECO:0000313|EMBL:ADI30169.1}; TaxID=666681 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Met
cn_combo_scaffold_1942_14
Pseudomonas chloritidismutans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13376..14578
DNA (1203bp) protein (401aa)
hypothetical protein n=1 Tax=Burkholderia sp. JPY251 RepID=UPI000365FC7E
Uncharacterized protein {ECO:0000313|EMBL:ESR01312.1}; TaxID=1263865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas chlor
hypothetical protein
cn_combo_scaffold_1942_15
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14575..16968
DNA (2394bp) protein (798aa)
Restriction endonuclease, putative n=1 Tax=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) RepID=B5ECU3_GEOBB
Putative Restriction endonuclease {ECO:0000313|EMBL:CDI01455.1}; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatu
restriction endonuclease
cn_combo_scaffold_1942_16
unknown

Not on your lists

17612..17884
DNA (273bp) protein (91aa)

This feature has no annotations

cn_combo_scaffold_1942_17
RIFOXYA2_FULL_Ignavibacteria_37_17_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

18074..18862
DNA (789bp) protein (263aa)
Putative uncharacterized protein n=1 Tax=Burkholderia pseudomallei S13 RepID=B1HFD2_BURPE
hypothetical protein
Tax=RIFOXYA2_FULL_Ignavibacteria_37_17_curated
cn_combo_scaffold_1942_18
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19088..19288)
DNA (201bp) protein (67aa)
Helix-turn-helix protein, CopG n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YBG5_NITMU
helix-turn-helix protein, CopG
Helix-turn-helix protein, CopG {ECO:0000313|EMBL:ABB73906.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrososp
cn_combo_scaffold_1942_19
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19434..19628
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YBG4_NITMU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB73907.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira mul
cn_combo_scaffold_1942_20
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20308..20595
DNA (288bp) protein (96aa)
Type I antifreeze protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YBG3_NITMU
type I antifreeze protein
Type I antifreeze protein {ECO:0000313|EMBL:ABB73908.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira m
cn_combo_scaffold_1942_21
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20624..21292
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YBG2_NITMU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB73909.1}; Flags: Precursor;; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" sourc
cn_combo_scaffold_1942_22
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


21320..23086
DNA (1767bp) protein (589aa)
aspS; aspartyl-tRNA synthetase (EC:6.1.1.12) rbh
Aspartate--tRNA(Asp/Asn) ligase {ECO:0000255|HAMAP-Rule:MF_00044}; EC=6.1.1.23 {ECO:0000255|HAMAP-Rule:MF_00044};; Aspartyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00044}; Short=AspRS {ECO:0000255|
Aspartate--tRNA ligase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=SYD_NITMU
cn_combo_scaffold_1942_23
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23199..23663
DNA (465bp) protein (155aa)
Dihydroneopterin triphosphate pyrophosphatase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YBG0_NITMU
ntpA; dATP pyrophosphohydrolase rbh
Dihydroneopterin triphosphate pyrophosphatase {ECO:0000313|EMBL:ABB73911.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" so
cn_combo_scaffold_1942_24
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23842..24942
DNA (1101bp) protein (367aa)
Quinolinate synthase A {ECO:0000256|HAMAP-Rule:MF_00569}; EC=2.5.1.72 {ECO:0000256|HAMAP-Rule:MF_00569};; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosom
Quinolinate synthase A n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YBF9_NITMU
quinolinate synthetase rbh
cn_combo_scaffold_1942_25
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24979..25731
DNA (753bp) protein (251aa)
Endonuclease/exonuclease/phosphatase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YBF8_NITMU
endonuclease/exonuclease/phosphatase rbh
Endonuclease/exonuclease/phosphatase {ECO:0000313|EMBL:ABB73913.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nit
cn_combo_scaffold_1942_26
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25731..26825
DNA (1095bp) protein (365aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synth
Translation factor SUA5 n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YBF7_NITMU
Sua5/YciO/YrdC/YwlC rbh
cn_combo_scaffold_1942_27
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26837..27616
DNA (780bp) protein (260aa)
HAD-superfamily hydrolase subfamily IA, variant 3 n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YBF6_NITMU
HAD family hydrolase rbh
HAD-superfamily hydrolase subfamily IA, variant 3 {ECO:0000313|EMBL:ABB73915.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;
cn_combo_scaffold_1942_28
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27797..28048
DNA (252bp) protein (84aa)
Phosphate-starvation-inducible E n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YBF5_NITMU
phosphate-starvation-inducible E
Phosphate-starvation-inducible E {ECO:0000313|EMBL:ABB73916.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitroso
Displaying 28 items

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