Alias: GWA2_CP_megabin_Ab397_26
name | lists | location/seqs | annotations | notes |
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gwa2_scaffold_394_1
Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b, Parcubacteria, Bacteria
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Not on your lists |
comp(3..776)
----------------- DNA (774bp) protein (258aa) |
V-type ATP synthase subunit A (EC:3.6.3.14)
V-type ATP synthase alpha chain 1 {ECO:0000313|EMBL:KKQ57727.1}; Flags: Fragment;; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
V-type ATP synthase alpha chain 1
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gwa2_scaffold_394_2
Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b, Parcubacteria, Bacteria
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Not on your lists |
comp(871..1197)
----------------- DNA (327bp) protein (109aa) |
V-type ATP synthase subunit F {ECO:0000313|EMBL:KKQ57728.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
V-type ATP synthase subunit F
V-type ATP synthase subunit F
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gwa2_scaffold_394_3
Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b, Parcubacteria, Bacteria
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Not on your lists |
comp(1199..2185)
----------------- DNA (987bp) protein (329aa) |
ATP synthase, subunit C {ECO:0000313|EMBL:KKQ57729.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
ATP synthase, subunit C
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Unique sequence in NCBI but quite a few hits in ggKbase
Jill Banfield
(4/25/16)
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gwa2_scaffold_394_4
Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b, Parcubacteria, Bacteria
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Not on your lists |
comp(2200..2766)
----------------- DNA (567bp) protein (189aa) |
V-type proton ATPase subunit E {ECO:0000313|EMBL:KKQ57730.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
atpE; V-type proton ATPase subunit E
V-type proton ATPase subunit E
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gwa2_scaffold_394_5
Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b, Parcubacteria, Bacteria
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Not on your lists |
comp(2827..3303)
----------------- DNA (477bp) protein (159aa) |
ATP synthase subunit C. (EC:3.6.3.14)
ATP synthase subunit C {ECO:0000313|EMBL:KKQ57731.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
ATP synthase subunit C
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gwa2_scaffold_394_6
Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b, Parcubacteria, Bacteria
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Not on your lists |
comp(3395..5401)
----------------- DNA (2007bp) protein (669aa) |
H(+)-transporting two-sector ATPase {ECO:0000313|EMBL:KKQ57732.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
V-type ATPase 116 kDa subunit
H(+)-transporting two-sector ATPase
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ggKbase hits to other CPR (OD1)
Jill Banfield
(4/25/16)
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gwa2_scaffold_394_7
Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b, Parcubacteria, Bacteria
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Not on your lists |
comp(5411..5740)
----------------- DNA (330bp) protein (110aa) |
Uncharacterized protein {ECO:0000313|EMBL:KKQ57733.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
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gwa2_scaffold_394_8
Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b, Parcubacteria, Bacteria
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Not on your lists |
6036..7400
----------------- DNA (1365bp) protein (455aa) |
Citrate transporter {ECO:0000313|EMBL:KKQ57734.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
citrate transporter
Citrate transporter
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NCBI domains: permease/antiporter, transporterDB supports with weak hit to arsB or Na anion transporter. Best hits to ARCHAEA. Swiss model (over entire length): bacterial dicarboxylate/sodium symporter
Jill Banfield
(4/25/16)
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gwa2_scaffold_394_9
Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b, Parcubacteria, Bacteria
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Not on your lists |
comp(7458..7847)
----------------- DNA (390bp) protein (130aa) |
respiratory nitrite reductase specific menaquinol--cytochrome-c reductase (NrfH) (EC:1.10.2.-)
Respiratory nitrite reductase specific menaquinol-cytochrome-c reductase (NrfH) {ECO:0000313|EMBL:KKQ57735.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacteri
Respiratory nitrite reductase specific menaquinol--cytochrome-c reductase (NrfH)
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confirmed-swissmodel as NrfH
Cindy Castelle
(5/2/16)
4 CxxCH motifs. Nothing similar in NCBI. Domain hit is nitrite reductase (which is a multi-heme cytochrome). Swiss Model supports as best choice though hydroxylamine reductase is second. Interpro: multiheme cytochrome with signal peptide
Jill Banfield
(4/25/16)
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gwa2_scaffold_394_10
Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b, Parcubacteria, Bacteria
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Not on your lists |
comp(7850..8812)
----------------- DNA (963bp) protein (321aa) |
Hydroxylamine oxidoreductase {ECO:0000313|EMBL:KKQ57736.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
hypothetical protein
Hydroxylamine oxidoreductase
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Predicted to be cytoplasmic- Regular HAO are periplasmic or facing the extracellular space
Cindy Castelle
(5/2/16)
9 CxxCH motifs. Swiss model supports annotation of hydroxylamine reductase. Weak domain hit to tetraheme cytochrome involved in ammonia oxidation. Interpro: membrane -anchored multiheme cytochrome
Jill Banfield
(4/25/16)
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gwa2_scaffold_394_11
Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b, Parcubacteria, Bacteria
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Not on your lists |
comp(9007..10065)
----------------- DNA (1059bp) protein (353aa) |
Cytochrome b/b6 domain-containing protein {ECO:0000313|EMBL:KKQ57737.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
cbcW; menaquinol oxidoreductase complex Cbc3, cytochrome b subunit
Cytochrome b/b6 domain-containing protein
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membrane-bound
Cindy Castelle
(4/26/16)
Annotation supported by NCBI domain. No indication in CPR. Distant best hit is to Caldithrix. Interpro: membrane protein, diheme domain - b/b6 annotation supported
Jill Banfield
(4/25/16)
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gwa2_scaffold_394_12
Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b, Parcubacteria, Bacteria
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Not on your lists |
comp(10062..10580)
----------------- DNA (519bp) protein (173aa) |
Cytochrome b6-f complex iron-sulfur subunit {ECO:0000313|EMBL:KKQ57738.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
petC; cytochrome b6-f complex, iron-sulfur subunit
Cytochrome b6-f complex iron-sulfur subunit
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membrane-bound by psortB
Cindy Castelle
(4/26/16)
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gwa2_scaffold_394_13
Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b, Parcubacteria, Bacteria
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Not on your lists |
comp(10751..11425)
----------------- DNA (675bp) protein (225aa) |
Uncharacterized protein {ECO:0000313|EMBL:KKQ57739.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
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only hits to 3 OD1 in NCBI..odd for a cytochrome!
Cindy Castelle
(4/26/16)
Four CxxCH motifs
Jill Banfield
(4/25/16)
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gwa2_scaffold_394_14
Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b, Parcubacteria, Bacteria
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Not on your lists |
comp(11543..12949)
----------------- DNA (1407bp) protein (469aa) |
NHL repeat containing protein {ECO:0000313|EMBL:KKQ57740.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
hypothetical protein
NHL repeat containing protein
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gwa2_scaffold_394_15
Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b, Parcubacteria, Bacteria
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Not on your lists |
comp(12980..15055)
----------------- DNA (2076bp) protein (692aa) |
Uncharacterized protein {ECO:0000313|EMBL:KKQ57741.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
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NCBI no domain. Interpro: extracellular (membrane anchor), Swiss Model: outer membrane coverage (models only small region).
Jill Banfield
(4/25/16)
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gwa2_scaffold_394_16
Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b, Parcubacteria, Bacteria
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Not on your lists |
comp(15288..16274)
----------------- DNA (987bp) protein (329aa) |
Cytochrome C family protein {ECO:0000313|EMBL:KKQ57742.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
cytochrome C family protein
Cytochrome C family protein
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10 CxxCH motifs
Jill Banfield
(4/25/16)
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gwa2_scaffold_394_17
Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b, Parcubacteria, Bacteria
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Not on your lists |
comp(16447..17145)
----------------- DNA (699bp) protein (233aa) |
Uncharacterized protein {ECO:0000313|EMBL:KKQ57743.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
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Swiss model : local region hits to DNA repair protein REV1. Interpro predicts signal peptide and extracellular region. NCBI: no domains
Jill Banfield
(4/25/16)
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gwa2_scaffold_394_18
Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b, Parcubacteria, Bacteria
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Not on your lists |
comp(17164..18024)
----------------- DNA (861bp) protein (287aa) |
Uncharacterized protein {ECO:0000313|EMBL:KKQ57744.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
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gwa2_scaffold_394_19
Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b, Parcubacteria, Bacteria
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Not on your lists |
comp(18301..21543)
----------------- DNA (3243bp) protein (1081aa) |
Peptidase M28 {ECO:0000313|EMBL:KKQ57745.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
peptidase M28
Peptidase M28
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gwa2_scaffold_394_20
Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b, Parcubacteria, Bacteria
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Not on your lists |
comp(21676..22734)
----------------- DNA (1059bp) protein (353aa) |
WD40-like protein Beta Propeller {ECO:0000313|EMBL:KKQ57746.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
WD40 domain-containing protein
WD40-like Beta Propeller
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gwa2_scaffold_394_21
Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b, Parcubacteria, Bacteria
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Not on your lists |
23031..23174
----------------- DNA (144bp) protein (48aa) |
Uncharacterized protein {ECO:0000313|EMBL:KKQ57747.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
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gwa2_scaffold_394_22
Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b, Parcubacteria, Bacteria
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Not on your lists |
comp(23247..23675)
----------------- DNA (429bp) protein (143aa) |
Uncharacterized protein {ECO:0000313|EMBL:KKQ57748.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
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gwa2_scaffold_394_23
Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b, Parcubacteria, Bacteria
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Not on your lists |
comp(23804..24175)
----------------- DNA (372bp) protein (124aa) |
malate dehydrogenase (EC:1.1.1.38)
Malate dehydrogenase (Oxaloacetate-decarboxylating) {ECO:0000313|EMBL:KKQ57749.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
Malate dehydrogenase (Oxaloacetate-decarboxylating)
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split gene with the next one
Cindy Castelle
(5/16/16)
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gwa2_scaffold_394_24
Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b, Parcubacteria, Bacteria
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Not on your lists |
comp(24127..25140)
----------------- DNA (1014bp) protein (338aa) |
malate dehydrogenase (EC:1.1.1.40)
Malate dehydrogenase {ECO:0000313|EMBL:KKQ57750.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
Malate dehydrogenase (Oxaloacetate-decarboxylating) (NADP(+))
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gwa2_scaffold_394_25
Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b, Parcubacteria, Bacteria
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Not on your lists |
comp(25198..26586)
----------------- DNA (1389bp) protein (463aa) |
Strongly similair to thiamine biosynthesis enzyme ThiH {ECO:0000313|EMBL:KKQ57751.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
thiH; thiamine biosynthesis protein ThiH
Strongly similair to thiamine biosynthesis enzyme ThiH
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[FeFe] hydrogenase H-cluster radical SAM maturase HydG
Cindy Castelle
(5/16/16)
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gwa2_scaffold_394_26
Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b, Parcubacteria, Bacteria
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Not on your lists |
comp(26588..27643)
----------------- DNA (1056bp) protein (352aa) |
Biotin synthase {ECO:0000313|EMBL:KKQ57752.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
BioB; biotin synthase and related enzymes
Biotin synthase and related enzymes
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[FeFe] hydrogenase H-cluster radical SAM maturase HydE
Cindy Castelle
(5/16/16)
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gwa2_scaffold_394_27
Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b, Parcubacteria, Bacteria
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Not on your lists |
comp(27814..28374)
----------------- DNA (561bp) protein (187aa) |
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit {ECO:0000313|EMBL:KKQ57753.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2
Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit beta
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit
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gwa2_scaffold_394_28
Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b, Parcubacteria, Bacteria
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Not on your lists |
comp(28371..29213)
----------------- DNA (843bp) protein (281aa) |
Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit alpha (EC:4.2.1.2)
Tartrate dehydratase subunit alpha {ECO:0000313|EMBL:KKQ57754.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
Tartrate dehydratase subunit alpha
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gwa2_scaffold_394_29
Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b, Parcubacteria, Bacteria
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Not on your lists |
comp(29210..29965)
----------------- DNA (756bp) protein (252aa) |
frdB; fumarate reductase iron-sulfur subunit (EC:1.3.99.1)
Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit {ECO:0000313|EMBL:KKQ57755.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_
Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit
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gwa2_scaffold_394_30
Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b, Parcubacteria, Bacteria
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Not on your lists |
comp(29962..31704)
----------------- DNA (1743bp) protein (581aa) |
Succinate dehydrogenase or fumarate reductase, flavoprotein subunit {ECO:0000313|EMBL:KKQ57756.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GW
ubiquinone-dependent succinate dehydrogenase or fumarate reductase, flavoprotein subunit
Succinate dehydrogenase or fumarate reductase, flavoprotein subunit
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