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gwa2_scaffold_394

Alias: GWA2_CP_megabin_Ab397_26

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Displaying items 1-30 of 98 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwa2_scaffold_394_1

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comp(3..776)
-----------------
DNA (774bp)
protein (258aa)
V-type ATP synthase subunit A (EC:3.6.3.14)
V-type ATP synthase alpha chain 1 {ECO:0000313|EMBL:KKQ57727.1}; Flags: Fragment;; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
V-type ATP synthase alpha chain 1
gwa2_scaffold_394_2

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comp(871..1197)
-----------------
DNA (327bp)
protein (109aa)
V-type ATP synthase subunit F {ECO:0000313|EMBL:KKQ57728.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
V-type ATP synthase subunit F
V-type ATP synthase subunit F
gwa2_scaffold_394_3

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comp(1199..2185)
-----------------
DNA (987bp)
protein (329aa)
ATP synthase, subunit C {ECO:0000313|EMBL:KKQ57729.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
ATP synthase, subunit C
Unique sequence in NCBI but quite a few hits in ggKbase Jill Banfield (4/25/16)
gwa2_scaffold_394_4

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comp(2200..2766)
-----------------
DNA (567bp)
protein (189aa)
V-type proton ATPase subunit E {ECO:0000313|EMBL:KKQ57730.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
atpE; V-type proton ATPase subunit E
V-type proton ATPase subunit E
gwa2_scaffold_394_5

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comp(2827..3303)
-----------------
DNA (477bp)
protein (159aa)
ATP synthase subunit C. (EC:3.6.3.14)
ATP synthase subunit C {ECO:0000313|EMBL:KKQ57731.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
ATP synthase subunit C
gwa2_scaffold_394_6

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comp(3395..5401)
-----------------
DNA (2007bp)
protein (669aa)
H(+)-transporting two-sector ATPase {ECO:0000313|EMBL:KKQ57732.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
V-type ATPase 116 kDa subunit
H(+)-transporting two-sector ATPase
ggKbase hits to other CPR (OD1) Jill Banfield (4/25/16)
gwa2_scaffold_394_7

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comp(5411..5740)
-----------------
DNA (330bp)
protein (110aa)
Uncharacterized protein {ECO:0000313|EMBL:KKQ57733.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
gwa2_scaffold_394_8

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6036..7400
-----------------
DNA (1365bp)
protein (455aa)
Citrate transporter {ECO:0000313|EMBL:KKQ57734.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
citrate transporter
Citrate transporter
NCBI domains: permease/antiporter, transporterDB supports with weak hit to arsB or Na anion transporter. Best hits to ARCHAEA. Swiss model (over entire length): bacterial dicarboxylate/sodium symporter Jill Banfield (4/25/16)
gwa2_scaffold_394_9

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comp(7458..7847)
-----------------
DNA (390bp)
protein (130aa)
respiratory nitrite reductase specific menaquinol--cytochrome-c reductase (NrfH) (EC:1.10.2.-)
Respiratory nitrite reductase specific menaquinol-cytochrome-c reductase (NrfH) {ECO:0000313|EMBL:KKQ57735.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacteri
Respiratory nitrite reductase specific menaquinol--cytochrome-c reductase (NrfH)
confirmed-swissmodel as NrfH Cindy Castelle (5/2/16)
4 CxxCH motifs. Nothing similar in NCBI. Domain hit is nitrite reductase (which is a multi-heme cytochrome). Swiss Model supports as best choice though hydroxylamine reductase is second. Interpro: multiheme cytochrome with signal peptide Jill Banfield (4/25/16)
gwa2_scaffold_394_10

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comp(7850..8812)
-----------------
DNA (963bp)
protein (321aa)
Hydroxylamine oxidoreductase {ECO:0000313|EMBL:KKQ57736.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
hypothetical protein
Hydroxylamine oxidoreductase
Predicted to be cytoplasmic- Regular HAO are periplasmic or facing the extracellular space Cindy Castelle (5/2/16)
9 CxxCH motifs. Swiss model supports annotation of hydroxylamine reductase. Weak domain hit to tetraheme cytochrome involved in ammonia oxidation. Interpro: membrane -anchored multiheme cytochrome Jill Banfield (4/25/16)
gwa2_scaffold_394_11

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comp(9007..10065)
-----------------
DNA (1059bp)
protein (353aa)
Cytochrome b/b6 domain-containing protein {ECO:0000313|EMBL:KKQ57737.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
cbcW; menaquinol oxidoreductase complex Cbc3, cytochrome b subunit
Cytochrome b/b6 domain-containing protein
membrane-bound Cindy Castelle (4/26/16)
Annotation supported by NCBI domain. No indication in CPR. Distant best hit is to Caldithrix. Interpro: membrane protein, diheme domain - b/b6 annotation supported Jill Banfield (4/25/16)
gwa2_scaffold_394_12

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comp(10062..10580)
-----------------
DNA (519bp)
protein (173aa)
Cytochrome b6-f complex iron-sulfur subunit {ECO:0000313|EMBL:KKQ57738.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
petC; cytochrome b6-f complex, iron-sulfur subunit
Cytochrome b6-f complex iron-sulfur subunit
membrane-bound by psortB Cindy Castelle (4/26/16)
gwa2_scaffold_394_13

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comp(10751..11425)
-----------------
DNA (675bp)
protein (225aa)
Uncharacterized protein {ECO:0000313|EMBL:KKQ57739.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
only hits to 3 OD1 in NCBI..odd for a cytochrome! Cindy Castelle (4/26/16)
Four CxxCH motifs Jill Banfield (4/25/16)
gwa2_scaffold_394_14

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comp(11543..12949)
-----------------
DNA (1407bp)
protein (469aa)
NHL repeat containing protein {ECO:0000313|EMBL:KKQ57740.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
hypothetical protein
NHL repeat containing protein
gwa2_scaffold_394_15

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comp(12980..15055)
-----------------
DNA (2076bp)
protein (692aa)
Uncharacterized protein {ECO:0000313|EMBL:KKQ57741.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
NCBI no domain. Interpro: extracellular (membrane anchor), Swiss Model: outer membrane coverage (models only small region). Jill Banfield (4/25/16)
gwa2_scaffold_394_16

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comp(15288..16274)
-----------------
DNA (987bp)
protein (329aa)
Cytochrome C family protein {ECO:0000313|EMBL:KKQ57742.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
cytochrome C family protein
Cytochrome C family protein
10 CxxCH motifs Jill Banfield (4/25/16)
gwa2_scaffold_394_17

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comp(16447..17145)
-----------------
DNA (699bp)
protein (233aa)
Uncharacterized protein {ECO:0000313|EMBL:KKQ57743.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
Swiss model : local region hits to DNA repair protein REV1. Interpro predicts signal peptide and extracellular region. NCBI: no domains Jill Banfield (4/25/16)
gwa2_scaffold_394_18

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comp(17164..18024)
-----------------
DNA (861bp)
protein (287aa)
Uncharacterized protein {ECO:0000313|EMBL:KKQ57744.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
gwa2_scaffold_394_19

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comp(18301..21543)
-----------------
DNA (3243bp)
protein (1081aa)
Peptidase M28 {ECO:0000313|EMBL:KKQ57745.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
peptidase M28
Peptidase M28
gwa2_scaffold_394_20

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comp(21676..22734)
-----------------
DNA (1059bp)
protein (353aa)
WD40-like protein Beta Propeller {ECO:0000313|EMBL:KKQ57746.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
WD40 domain-containing protein
WD40-like Beta Propeller
gwa2_scaffold_394_21

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23031..23174
-----------------
DNA (144bp)
protein (48aa)
Uncharacterized protein {ECO:0000313|EMBL:KKQ57747.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
gwa2_scaffold_394_22

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comp(23247..23675)
-----------------
DNA (429bp)
protein (143aa)
Uncharacterized protein {ECO:0000313|EMBL:KKQ57748.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
gwa2_scaffold_394_23

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comp(23804..24175)
-----------------
DNA (372bp)
protein (124aa)
malate dehydrogenase (EC:1.1.1.38)
Malate dehydrogenase (Oxaloacetate-decarboxylating) {ECO:0000313|EMBL:KKQ57749.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
Malate dehydrogenase (Oxaloacetate-decarboxylating)
split gene with the next one Cindy Castelle (5/16/16)
gwa2_scaffold_394_24

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comp(24127..25140)
-----------------
DNA (1014bp)
protein (338aa)
malate dehydrogenase (EC:1.1.1.40)
Malate dehydrogenase {ECO:0000313|EMBL:KKQ57750.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
Malate dehydrogenase (Oxaloacetate-decarboxylating) (NADP(+))
gwa2_scaffold_394_25

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comp(25198..26586)
-----------------
DNA (1389bp)
protein (463aa)
Strongly similair to thiamine biosynthesis enzyme ThiH {ECO:0000313|EMBL:KKQ57751.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
thiH; thiamine biosynthesis protein ThiH
Strongly similair to thiamine biosynthesis enzyme ThiH
[FeFe] hydrogenase H-cluster radical SAM maturase HydG Cindy Castelle (5/16/16)
gwa2_scaffold_394_26

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comp(26588..27643)
-----------------
DNA (1056bp)
protein (352aa)
Biotin synthase {ECO:0000313|EMBL:KKQ57752.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
BioB; biotin synthase and related enzymes
Biotin synthase and related enzymes
[FeFe] hydrogenase H-cluster radical SAM maturase HydE Cindy Castelle (5/16/16)
gwa2_scaffold_394_27

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comp(27814..28374)
-----------------
DNA (561bp)
protein (187aa)
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit {ECO:0000313|EMBL:KKQ57753.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2
Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit beta
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit
gwa2_scaffold_394_28

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comp(28371..29213)
-----------------
DNA (843bp)
protein (281aa)
Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit alpha (EC:4.2.1.2)
Tartrate dehydratase subunit alpha {ECO:0000313|EMBL:KKQ57754.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
Tartrate dehydratase subunit alpha
gwa2_scaffold_394_29

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comp(29210..29965)
-----------------
DNA (756bp)
protein (252aa)
frdB; fumarate reductase iron-sulfur subunit (EC:1.3.99.1)
Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit {ECO:0000313|EMBL:KKQ57755.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_
Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit
gwa2_scaffold_394_30

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comp(29962..31704)
-----------------
DNA (1743bp)
protein (581aa)
Succinate dehydrogenase or fumarate reductase, flavoprotein subunit {ECO:0000313|EMBL:KKQ57756.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GW
ubiquinone-dependent succinate dehydrogenase or fumarate reductase, flavoprotein subunit
Succinate dehydrogenase or fumarate reductase, flavoprotein subunit
Displaying items 1-30 of 98 in total

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