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gwa2_scaffold_1032

Alias: zPERA2_38_36_9

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Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
gwa2_scaffold_1032_1
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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137..856
-----------------
DNA (720bp)
protein (240aa)
seg (db=Seg db_id=seg from=194 to=211)
gwa2_scaffold_1032_2
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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884..1324
-----------------
DNA (441bp)
protein (147aa)
cAMP-binding protein-catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase n=2 Tax=unclassified Gammaproteobacteria RepID=A0Z7L1_9GAMM
cAMP-binding protein
CNMP_BINDING_1 (db=PatternScan db_id=PS00888 from=44 to=60 evalue=0.0 interpro_id=IPR018488 interpro_description=Cyclic nucleotide-binding, conserved site)
cAMP-binding domain-like (db=superfamily db_id=SSF51206 from=12 to=142 evalue=1.8e-32 interpro_id=IPR018490 interpro_description=Cyclic nucleotide-binding-like)
gwa2_scaffold_1032_3
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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1355..1930
-----------------
DNA (576bp)
protein (192aa)
Putative uncharacterized protein n=1 Tax=Dictyoglomus thermophilum H-6-12 RepID=B5YEI2_DICT6
hypothetical protein
seg (db=Seg db_id=seg from=30 to=43)
transmembrane_regions (db=TMHMM db_id=tmhmm from=41 to=63)
gwa2_scaffold_1032_4
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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2069..2368
-----------------
DNA (300bp)
protein (100aa)
seg (db=Seg db_id=seg from=10 to=21)
transmembrane_regions (db=TMHMM db_id=tmhmm from=74 to=93)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=22 evalue=5.0)
gwa2_scaffold_1032_5
zPERA2_38_36, Peregrinibacteria, Bacteria

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comp(2374..3378)
-----------------
DNA (1005bp)
protein (335aa)
seg (db=Seg db_id=seg from=76 to=92)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
gwa2_scaffold_1032_6
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

comp(3477..5123)
-----------------
DNA (1647bp)
protein (549aa)
seg (db=Seg db_id=seg from=223 to=236)
Glucocorticoid receptor-like (DNA-binding domain) (db=superfamily db_id=SSF57716 from=516 to=546 evalue=3.6e-05)
gwa2_scaffold_1032_7
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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5236..5499
-----------------
DNA (264bp)
protein (88aa)
BSCG--ribosomal--protein--S15
30S ribosomal protein S15 n=1 Tax=Thermosediminibacter oceani DSM 16646 RepID=D9S3L1_THEOJ
30S ribosomal protein S15
30S RIBOSOMAL PROTEIN S15 (db=HMMPanther db_id=PTHR23321:SF10 from=2 to=86 evalue=1.7e-40 interpro_id=IPR005290 interpro_description=Ribosomal protein S15, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
gwa2_scaffold_1032_8
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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5657..7765
-----------------
DNA (2109bp)
protein (703aa)
Polyribonucleotide nucleotidyltransferase (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase n=1 Tax=Halothermothrix orenii H 168 RepID=PNP_HALOH rbh
polynuc_phos: polyribonucleotide nucleot (db=HMMTigr db_id=TIGR03591 from=9 to=700 evalue=0.0 interpro_id=IPR012162 interpro_description=Polyribonucleotide nucleotidyltransferase GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: polyribonucleotide nucleotidyltransferase activity (GO:0004654), Biological Process: mRNA catabolic process (GO:0006402))
Polyribonucleotide nucleotidyltransferase (db=HMMPIR db_id=PIRSF005499 from=1 to=702 evalue=0.0 interpro_id=IPR012162 interpro_description=Polyribonucleotide nucleotidyltransferase GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: polyribonucleotide nucleotidyltransferase activity (GO:0004654), Biological Process: mRNA catabolic process (GO:0006402))
gwa2_scaffold_1032_9
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

7835..9454
-----------------
DNA (1620bp)
protein (540aa)
seg (db=Seg db_id=seg from=227 to=244)
gwa2_scaffold_1032_10
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

comp(9451..9984)
-----------------
DNA (534bp)
protein (178aa)
dCTP deaminase (EC:3.5.4.13)
Deoxycytidine triphosphate deaminase n=1 Tax=Halanaerobium praevalens DSM 2228 RepID=E3DPK5_HALPG
no description (db=Gene3D db_id=G3DSA:2.70.40.10 from=1 to=174 evalue=3.9e-53)
dUTPase-like (db=superfamily db_id=SSF51283 from=1 to=174 evalue=3.5e-49)
gwa2_scaffold_1032_11
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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10049..10465
-----------------
DNA (417bp)
protein (139aa)
Ferritin Dps family protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=K6UH61_9PROT
ferritin Dps family protein
(db=HMMPfam db_id=PF00210 from=7 to=135 evalue=3.0e-21 interpro_id=IPR008331 interpro_description=Ferritin/DPS protein domain GO=Biological Process: cellular iron ion homeostasis (GO:0006879), Molecular Function: ferric iron binding (GO:0008199))
Ferritin-like (db=superfamily db_id=SSF47240 from=1 to=138 evalue=3.1e-27 interpro_id=IPR009078 interpro_description=Ferritin/ribonucleotide reductase-like GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: transition metal ion binding (GO:0046914), Biological Process: oxidation-reduction process (GO:0055114))
gwa2_scaffold_1032_12
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

10548..11543
-----------------
DNA (996bp)
protein (332aa)
coiled-coil (db=Coil db_id=coil from=41 to=62 evalue=NA)
gwa2_scaffold_1032_13
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

11630..13465
-----------------
DNA (1836bp)
protein (612aa)
Multidrug resistance ABC transporter ATP binding protein n=10 Tax=Legionellaceae RepID=G8UTL8_LEGPN rbh
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=22 to=44)
ABC_TRANSPORTER_1 (db=PatternScan db_id=PS00211 from=482 to=496 evalue=0.0 interpro_id=IPR017871 interpro_description=ABC transporter, conserved site GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ATPase activity (GO:0016887))
gwa2_scaffold_1032_14
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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comp(13458..14567)
-----------------
DNA (1110bp)
protein (370aa)
Metallophosphoesterase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAR2_9BACT
hypothetical protein
seg (db=Seg db_id=seg from=3 to=16)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=22)
gwa2_scaffold_1032_15
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

14813..15034
-----------------
DNA (222bp)
protein (74aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=34)
gwa2_scaffold_1032_16
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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15465..15986
-----------------
DNA (522bp)
protein (174aa)
GCN5-related N-acetyltransferase n=1 Tax=Clostridium cellulovorans 743B RepID=D9SRF7_CLOC7
N-acetyltransferase GCN5
seg (db=Seg db_id=seg from=92 to=102)
(db=HMMPfam db_id=PF00583 from=73 to=149 evalue=1.1e-08 interpro_id=IPR000182 interpro_description=GCN5-related N-acetyltransferase (GNAT) domain GO=Molecular Function: N-acetyltransferase activity (GO:0008080))
gwa2_scaffold_1032_17
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

16114..17067
-----------------
DNA (954bp)
protein (318aa)
RhuM n=5 Tax=Coxiella burnetii RepID=A9KCJ8_COXBN rbh
rhuM; RhuM
coiled-coil (db=Coil db_id=coil from=181 to=209 evalue=NA)
seg (db=Seg db_id=seg from=303 to=317)
gwa2_scaffold_1032_18
zPERA2_38_36, Peregrinibacteria, Bacteria

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17079..17576
-----------------
DNA (498bp)
protein (166aa)
Regulatory protein n=1 Tax=Enterococcus hirae ATCC 9790 RepID=I6TCP8_ENTHA
regulatory protein
no description (db=Gene3D db_id=G3DSA:3.90.960.10 from=9 to=160 evalue=1.9e-22 interpro_id=IPR007214 interpro_description=YbaK/aminoacyl-tRNA synthetase-associated domain)
(db=HMMPfam db_id=PF04073 from=32 to=148 evalue=1.3e-18 interpro_id=IPR007214 interpro_description=YbaK/aminoacyl-tRNA synthetase-associated domain)
gwa2_scaffold_1032_19
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

17652..18677
-----------------
DNA (1026bp)
protein (342aa)
coiled-coil (db=Coil db_id=coil from=58 to=79 evalue=NA)
gwa2_scaffold_1032_20
zPERA2_38_36, Peregrinibacteria, Bacteria

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18684..19553
-----------------
DNA (870bp)
protein (290aa)
gwa2_scaffold_1032_21
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

19573..21204
-----------------
DNA (1632bp)
protein (544aa)
seg (db=Seg db_id=seg from=222 to=235)
gwa2_scaffold_1032_22
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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21324..22325
-----------------
DNA (1002bp)
protein (334aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Thermodesulfatator indicus DSM 15286 RepID=F8ADL7_THEID
RNA polymerase sigma factor, sigma-70 family
seg (db=Seg db_id=seg from=213 to=225)
yfiA: ribosomal subunit interface protein (db=HMMTigr db_id=TIGR00741 from=1 to=107 evalue=1.4e-09 interpro_id=IPR003489 interpro_description=Ribosomal protein S30Ae/sigma 54 modulation protein GO=Molecular Function: binding (GO:0005488), Biological Process: primary metabolic process (GO:0044238))
gwa2_scaffold_1032_23
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

22378..23241
-----------------
DNA (864bp)
protein (288aa)
TIGR00159 family protein n=1 Tax=Anaeroglobus geminatus F0357 RepID=G9YGT6_9FIRM
hypothetical protein
seg (db=Seg db_id=seg from=193 to=204)
transmembrane_regions (db=TMHMM db_id=tmhmm from=32 to=54)
gwa2_scaffold_1032_24
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

23238..24173
-----------------
DNA (936bp)
protein (312aa)
YbbR family protein n=1 Tax=Acetonema longum DSM 6540 RepID=F7NF45_9FIRM
hypothetical protein
seg (db=Seg db_id=seg from=17 to=28)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=30)
gwa2_scaffold_1032_25
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

24175..25272
-----------------
DNA (1098bp)
protein (366aa)
GTP-dependent translational factor YchF, putative n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A316_PELCD rbh
ychF; GTP-binding protein YchF
TIGR00092: GTP-binding protein YchF (db=HMMTigr db_id=TIGR00092 from=1 to=365 evalue=1.2e-169 interpro_id=IPR004396 interpro_description=Conserved hypothetical protein CHP00092 GO=Molecular Function: GTP binding (GO:0005525))
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=1 to=280 evalue=1.8e-81)
gwa2_scaffold_1032_26
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

comp(25269..27608)
-----------------
DNA (2340bp)
protein (780aa)
relA; GTP pyrophosphokinase (EC:2.7.6.5)
GTP pyrophosphokinase n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3A9Z8_CARHZ rbh
seg (db=Seg db_id=seg from=243 to=255)
transmembrane_regions (db=TMHMM db_id=tmhmm from=652 to=671)
gwa2_scaffold_1032_27
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

27681..28769
-----------------
DNA (1089bp)
protein (363aa)
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GDM4_9FIRM rbh
trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
seg (db=Seg db_id=seg from=286 to=299)
(db=HMMPfam db_id=PF03054 from=7 to=361 evalue=1.5e-120 interpro_id=IPR004506 interpro_description=tRNA-specific 2-thiouridylase GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: tRNA processing (GO:0008033), Molecular Function: transferase activity (GO:0016740))
gwa2_scaffold_1032_28
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

28993..29994
-----------------
DNA (1002bp)
protein (334aa)
sortase n=1 Tax=Clostridium arbusti SL206 RepID=UPI000288805C
sortase family protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=105 to=124)
(db=HMMPfam db_id=PF04203 from=186 to=328 evalue=3.6e-24 interpro_id=IPR005754 interpro_description=Peptidase C60, sortase A/B)
gwa2_scaffold_1032_29
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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comp(29991..30500)
-----------------
DNA (510bp)
protein (170aa)
Tetratricopeptide TPR_3 n=1 Tax=Chlorobium phaeobacteroides DSM 266 RepID=A1BIB3_CHLPD
hypothetical protein
coiled-coil (db=Coil db_id=coil from=93 to=125 evalue=NA)
seg (db=Seg db_id=seg from=141 to=166)
gwa2_scaffold_1032_30
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

30542..32569
-----------------
DNA (2028bp)
protein (676aa)
DNA ligase, NAD-dependent (EC:6.5.1.2)
DNA ligase n=1 Tax=Thermodesulfatator indicus DSM 15286 RepID=F8A8Z2_THEID rbh
coiled-coil (db=Coil db_id=coil from=3 to=24 evalue=NA)
seg (db=Seg db_id=seg from=7 to=20)
Displaying items 1-30 of 39 in total

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