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gwa2_scaffold_4849

Alias: zPERA2_38_36_12

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwa2_scaffold_4849_1
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

2..106
DNA (105bp) protein (35aa)
Uncharacterized protein {ECO:0000313|EMBL:KKQ70089.1}; Flags: Fragment;; TaxID=1619055 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_38_36.;"
gwa2_scaffold_4849_2
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

164..2083
DNA (1920bp) protein (640aa)
Exoribonuclease II n=1 Tax=Cyanothece sp. CCY0110 RepID=A3IWQ5_9CHRO
Exoribonuclease II Tax=zPERA2_38_36
ribonuclease II-like protein
seg (db=Seg db_id=seg from=74 to=87)
gwa2_scaffold_4849_3
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

comp(2086..2409)
DNA (324bp) protein (108aa)
Uncharacterized protein {ECO:0000313|EMBL:KKQ70091.1}; TaxID=1619055 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_38_36.;"
coiled-coil (db=Coil db_id=coil from=52 to=73 evalue=NA)
seg (db=Seg db_id=seg from=19 to=32)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
gwa2_scaffold_4849_4
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

comp(2413..3387)
DNA (975bp) protein (325aa)
Lipoprotein A family protein n=1 Tax=Photobacterium angustum S14 RepID=Q1ZWJ9_PHOAS
Lipoprotein A family protein {ECO:0000313|EMBL:KKQ70092.1}; TaxID=1619055 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_38_36.;"
lipoprotein A
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
gwa2_scaffold_4849_5
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

comp(3377..3850)
DNA (474bp) protein (158aa)
DNA/RNA-binding protein n=1 Tax=Clostridium sp. JC122 RepID=UPI000289EBF3
DNA/RNA-binding protein Tax=zPERA2_38_36
jag protein
(db=HMMPfam db_id=PF01424 from=103 to=152 evalue=1.9e-07 interpro_id=IPR001374 interpro_description=Single-stranded nucleic acid binding R3H GO=Molecular Function: nucleic acid binding (GO:0003676))
gwa2_scaffold_4849_6
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

comp(3893..5125)
DNA (1233bp) protein (411aa)
Preprotein translocase subunit YidC n=4 Tax=Desulfitobacterium RepID=I4AEX5_9FIRM
Preprotein translocase subunit YidC {ECO:0000313|EMBL:KKQ70094.1}; TaxID=1619055 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_38_36.;"
preprotein translocase subunit YidC
seg (db=Seg db_id=seg from=190 to=205)
gwa2_scaffold_4849_7
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists


comp(5107..5457)
DNA (351bp) protein (117aa)
Uncharacterized protein {ECO:0000313|EMBL:KKQ70095.1}; TaxID=1619055 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_38_36.;"
(db=HMMPfam db_id=PF00825 from=2 to=108 evalue=2.3e-13 interpro_id=IPR000100 interpro_description=Ribonuclease P GO=Molecular Function: tRNA binding (GO:0000049), Molecular Function: ribonuclease P activity (GO:0004526), Biological Process: tRNA processing (GO:0008033))
Ribosomal protein S5 domain 2-like (db=superfamily db_id=SSF54211 from=6 to=111 evalue=2.2e-12 interpro_id=IPR020568 interpro_description=Ribosomal protein S5 domain 2-type fold)
rnpA: ribonuclease P protein component (db=HMMTigr db_id=TIGR00188 from=1 to=113 evalue=3.6e-10 interpro_id=IPR000100 interpro_description=Ribonuclease P GO=Molecular Function: tRNA binding (GO:0000049), Molecular Function: ribonuclease P activity (GO:0004526), Biological Process: tRNA processing (GO:0008033))
gwa2_scaffold_4849_8
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists


comp(5459..5590)
DNA (132bp) protein (44aa)
50S ribosomal protein L34 n=3 Tax=Clostridiales RepID=A6NQD6_9FIRM
Ribosomal protein L34 Tax=PER_GWF2_38_29
50S ribosomal protein L34; K02914 large subunit ribosomal protein L34
seg (db=Seg db_id=seg from=4 to=13)
gwa2_scaffold_4849_9
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

5776..7785
DNA (2010bp) protein (670aa)
seg Tax=zPERA2_38_36
coiled-coil (db=Coil db_id=coil from=75 to=96 evalue=NA)
seg (db=Seg db_id=seg from=42 to=60)
3-carboxy-cis,cis-mucoante lactonizing enzyme (db=superfamily db_id=SSF75011 from=503 to=662 evalue=9.6e-06)
gwa2_scaffold_4849_10
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

7852..8133
DNA (282bp) protein (94aa)
Tax=zPERA2_38_36
gwa2_scaffold_4849_11
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

comp(8144..9283)
DNA (1140bp) protein (380aa)
Glycosyltransferase, group 1 family protein n=30 Tax=Leptospira RepID=J4JSY5_LEPIR
Glycosyltransferase, group 1 family protein Tax=zPERA2_38_36
glycosyl transferase
(db=HMMPfam db_id=PF00534 from=206 to=355 evalue=2.7e-32 interpro_id=IPR001296 interpro_description=Glycosyl transferase, family 1 GO=Biological Process: biosynthetic process (GO:0009058))
gwa2_scaffold_4849_12
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

9410..9637
DNA (228bp) protein (76aa)
Tax=zPERA2_38_36
gwa2_scaffold_4849_13
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

comp(9634..10146)
DNA (513bp) protein (171aa)
Deoxycytidylate deaminase (EC:3.5.4.12)
Deoxycytidylate deaminase n=1 Tax=Desulfobacter postgatei 2ac9 RepID=I5B5D0_9DELT
Deoxycytidylate deaminase {ECO:0000313|EMBL:KKQ70101.1}; TaxID=1619055 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_38_36.;"
CYT_DCMP_DEAMINASES (db=PatternScan db_id=PS00903 from=87 to=122 evalue=0.0 interpro_id=IPR016192 interpro_description=APOBEC/CMP deaminase, zinc-binding GO=Molecular Function: zinc ion binding (GO:0008270), Molecular Function: hydrolase activity (GO:0016787))
gwa2_scaffold_4849_14
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

comp(10128..10991)
DNA (864bp) protein (288aa)
Ribose 1,5-bisphosphate isomerase n=2 Tax=Desulfurococcus RepID=I3XRC6_9CREN
Ribose 1,5-bisphosphate isomerase Tax=zPERA2_38_36
translation initiation factor IF-2B subunit delta
seg (db=Seg db_id=seg from=257 to=268)
gwa2_scaffold_4849_15
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

comp(10978..12462)
DNA (1485bp) protein (495aa)
thymidine phosphorylase (EC:2.4.2.4)
Putative thymidine phosphorylase n=1 Tax=Methylophaga aminisulfidivorans MP RepID=F5SWM4_9GAMM rbh
Putative thymidine phosphorylase Tax=zPERA2_38_36
seg (db=Seg db_id=seg from=109 to=120)
gwa2_scaffold_4849_16
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

comp(12509..13648)
DNA (1140bp) protein (380aa)
ackA; acetate kinase (EC:2.7.2.1)
Acetate kinase n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=ACKA_CARHZ rbh
Acetate kinase {ECO:0000313|EMBL:KKQ70104.1}; TaxID=1619055 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_38_36.;"
ACETATE_KINASE_1 (db=PatternScan db_id=PS01075 from=3 to=14 evalue=0.0 interpro_id=IPR023865 interpro_description=Aliphatic acid kinase, short-chain, conserved site GO=Biological Process: metabolic process (GO:0008152), Molecular Function: kinase activity (GO:0016301), Biological Process: phosphorylation (GO:0016310), Molecular Function: phosphotransferase activity, carboxyl group as acceptor (GO:0016774))
gwa2_scaffold_4849_17
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

comp(13651..14655)
DNA (1005bp) protein (335aa)
Phosphate acetyltransferase n=2 Tax=Caldanaerobacter subterraneus RepID=B7R9T5_9THEO rbh
Phosphate acetyltransferase Tax=zPERA2_38_36
phosphate acetyltransferase
seg (db=Seg db_id=seg from=9 to=18)
gwa2_scaffold_4849_18
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

comp(14659..15375)
DNA (717bp) protein (239aa)
Predicted metal-dependent phosphoesterase, PHP family n=3 Tax=Methanobrevibacter smithii RepID=A5UMM1_METS3
Predicted metal-dependent phosphoesterase, PHP family Tax=zPERA2_38_36
metal-dependent phosphoesterase
transmembrane_regions (db=TMHMM db_id=tmhmm from=212 to=229)
gwa2_scaffold_4849_19
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

comp(15378..15641)
DNA (264bp) protein (88aa)
coiled-coil Tax=zPERA2_38_36
coiled-coil (db=Coil db_id=coil from=58 to=79 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=22)
gwa2_scaffold_4849_20
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

comp(15645..17123)
DNA (1479bp) protein (493aa)
Glutamate--tRNA ligase n=1 Tax=Ignavibacterium album JCM 16511 RepID=I0AKG7_IGNAJ rbh
Glutamate--tRNA ligase Tax=zPERA2_38_36
glutamyl/glutaminyl-tRNA synthetase
no description (db=Gene3D db_id=G3DSA:3.40.50.620 from=1 to=243 evalue=1.8e-44 interpro_id=IPR014729 interpro_description=Rossmann-like alpha/beta/alpha sandwich fold)
Displaying 20 items

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