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gwa2_scaffold_8092

Alias: zPERA2_38_36_13

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
gwa2_scaffold_8092_1
zPERA2_38_36, Peregrinibacteria, Bacteria

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2..343
-----------------
DNA (342bp)
protein (114aa)
gwa2_scaffold_8092_2
zPERA2_38_36, Peregrinibacteria, Bacteria

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comp(340..591)
-----------------
DNA (252bp)
protein (84aa)
gwa2_scaffold_8092_3
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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comp(601..1032)
-----------------
DNA (432bp)
protein (144aa)
alanyl-tRNA synthetase n=1 Tax=Marinilabilia salmonicolor JCM 21150 RepID=UPI00029B1416
threonyl/alanyl tRNA synthetase SAD
no description (db=HMMSmart db_id=SM00863 from=96 to=139 evalue=0.00034 interpro_id=IPR012947 interpro_description=Threonyl/alanyl tRNA synthetase, SAD GO=Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Molecular Function: ligase activity, forming aminoacyl-tRNA and related compounds (GO:0016876), Biological Process: tRNA aminoacylation (GO:0043039))
ThrRS/AlaRS common domain (db=superfamily db_id=SSF55186 from=1 to=142 evalue=2.3e-22 interpro_id=IPR018163 interpro_description=Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO=Molecular Function: nucleotide binding (GO:0000166))
gwa2_scaffold_8092_4
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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1149..1748
-----------------
DNA (600bp)
protein (200aa)
Tetratricopeptide TPR_2 n=1 Tax=Rickettsia endosymbiont of Ixodes scapularis RepID=C4YZZ1_9RICK
TPR repeat
coiled-coil (db=Coil db_id=coil from=178 to=199 evalue=NA)
no description (db=Gene3D db_id=G3DSA:1.25.40.10 from=7 to=194 evalue=2.9e-30 interpro_id=IPR011990 interpro_description=Tetratricopeptide-like helical GO=Molecular Function: binding (GO:0005488))
gwa2_scaffold_8092_5
zPERA2_38_36, Peregrinibacteria, Bacteria

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2298..3701
-----------------
DNA (1404bp)
protein (468aa)
exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase (EC:2.7.8.6)
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8E143_DICTD
seg (db=Seg db_id=seg from=319 to=326)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
gwa2_scaffold_8092_6
zPERA2_38_36, Peregrinibacteria, Bacteria

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3733..6330
-----------------
DNA (2598bp)
protein (866aa)
Protein translocase subunit SecA n=1 Tax=Tepidanaerobacter acetatoxydans RepID=F4LX21_TEPAE rbh
protein translocase subunit secA
coiled-coil (db=Coil db_id=coil from=809 to=830 evalue=NA)
secA: preprotein translocase, SecA subunit (db=HMMTigr db_id=TIGR00963 from=28 to=785 evalue=0.0 interpro_id=IPR000185 interpro_description=SecA protein GO=Molecular Function: ATP binding (GO:0005524), Biological Process: protein targeting (GO:0006605), Biological Process: intracellular protein transport (GO:0006886))
gwa2_scaffold_8092_7
zPERA2_38_36, Peregrinibacteria, Bacteria

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comp(6327..7493)
-----------------
DNA (1167bp)
protein (389aa)
Permease of the major facilitator superfamily n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QCY6_DESAH
major facilitator superfamily permease
seg (db=Seg db_id=seg from=312 to=324)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=30)
gwa2_scaffold_8092_8
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

comp(7915..8601)
-----------------
DNA (687bp)
protein (229aa)
Family 2 glycosyl transferase n=2 Tax=Rahnella RepID=H8NQE8_RAHAQ
family 2 glycosyl transferase
seg (db=Seg db_id=seg from=82 to=98)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=1 to=176 evalue=1.9e-29)
gwa2_scaffold_8092_9
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

comp(8598..9176)
-----------------
DNA (579bp)
protein (193aa)
Uncharacterized protein n=1 Tax=Citreicella sp. 357 RepID=I1B323_9RHOB
dedA family protein
seg (db=Seg db_id=seg from=143 to=153)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
gwa2_scaffold_8092_10
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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comp(9194..10192)
-----------------
DNA (999bp)
protein (333aa)
UDP-glucose 4-epimerase (EC:5.1.3.2)
UDP-glucose 4-epimerase n=1 Tax=Desulfurobacterium thermolithotrophum DSM 11699 RepID=F0S1K5_DESTD rbh
galE: UDP-glucose 4-epimerase (db=HMMTigr db_id=TIGR01179 from=3 to=331 evalue=1.3e-146 interpro_id=IPR005886 interpro_description=UDP-glucose 4-epimerase GO=Molecular Function: UDP-glucose 4-epimerase activity (GO:0003978), Biological Process: galactose metabolic process (GO:0006012))
(db=HMMPfam db_id=PF01370 from=4 to=245 evalue=1.9e-58 interpro_id=IPR001509 interpro_description=NAD-dependent epimerase/dehydratase GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: cellular metabolic process (GO:0044237), Molecular Function: coenzyme binding (GO:0050662))
gwa2_scaffold_8092_11
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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comp(10257..12536)
-----------------
DNA (2280bp)
protein (760aa)
DNA segregation ATPase FtsK/SpoIIIE and related proteins n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D2R0_PELTS rbh
FtsK; DNA segregation ATPase FtsK/SpoIIIE and related proteins
coiled-coil (db=Coil db_id=coil from=292 to=313 evalue=NA)
seg (db=Seg db_id=seg from=2 to=29)
gwa2_scaffold_8092_12
zPERA2_38_36, Peregrinibacteria, Bacteria

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comp(12557..13249)
-----------------
DNA (693bp)
protein (231aa)
Displaying 12 items

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