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gwc2_scaffold_710

Alias: PER_GWC2_39_17_9

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwc2_scaffold_710_1
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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71..631
-----------------
DNA (561bp)
protein (187aa)
DNA polymerase subunit beta n=1 Tax=Methanobacterium formicicum DSM 3637 RepID=K2RUS9_METFO
Uncharacterized protein {ECO:0000313|EMBL:KKR05149.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
nucleotidyltransferase domain-containing protein
coiled-coil (db=Coil db_id=coil from=32 to=53 evalue=NA)
gwc2_scaffold_710_2
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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921..1376
-----------------
DNA (456bp)
protein (152aa)
50S ribosomal protein L19 n=2 Tax=Leptotrichiaceae RepID=D1ALR8_SEBTE
50S ribosomal protein L19, large subunit ribosomal protein L19 {ECO:0000313|EMBL:KKR05150.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_1
50S ribosomal protein L19
RIBOSOMAL_L19 (db=PatternScan db_id=PS01015 from=87 to=102 evalue=0.0 interpro_id=IPR018257 interpro_description=Ribosomal protein L19, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
gwc2_scaffold_710_3
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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1471..2064
-----------------
DNA (594bp)
protein (198aa)
Ribonuclease HII, ribonuclease HII {ECO:0000313|EMBL:KKR05151.1}; EC=3.1.26.4 {ECO:0000313|EMBL:KKR05151.1};; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium
ribonuclease HII (EC:3.1.26.4)
Ribonuclease HII n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LU34_CLOCD
seg (db=Seg db_id=seg from=22 to=37)
gwc2_scaffold_710_4
zPERA2_38_36, Peregrinibacteria, Bacteria

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2061..3176
-----------------
DNA (1116bp)
protein (372aa)
Pyruvyl-transferase n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2BFT5_9BACI
Pyruvyl-transferase Tax=zPERA2_38_36
pyruvyltransferase
seg (db=Seg db_id=seg from=61 to=73)
gwc2_scaffold_710_5
zPERA2_38_36, Peregrinibacteria, Bacteria

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3221..4231
-----------------
DNA (1011bp)
protein (337aa)
seg Tax=zPERA2_38_36
seg (db=Seg db_id=seg from=40 to=51)
gwc2_scaffold_710_6
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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4265..5224
-----------------
DNA (960bp)
protein (320aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR05154.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
seg (db=Seg db_id=seg from=6 to=19)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=20 evalue=5.0)
gwc2_scaffold_710_7
zPERA2_38_36, Peregrinibacteria, Bacteria

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comp(5245..6036)
-----------------
DNA (792bp)
protein (264aa)
Glucose-1-phosphate thymidylyltransferase n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TNU5_METAC rbh
Glucose-1-phosphate thymidylyltransferase Tax=zPERA2_38_36
rbfA; glucose-1-phosphate thymidylyltransferase
GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE (db=HMMPanther db_id=PTHR22572:SF13 from=9 to=229 evalue=7.2e-104 interpro_id=IPR005907 interpro_description=Glucose-1-phosphate thymidylyltransferase, short form GO=Molecular Function: glucose-1-phosphate thymidylyltransferase activity (GO:0008879), Biological Process: extracellular polysaccharide biosynthetic process (GO:0045226))
gwc2_scaffold_710_8
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

comp(6071..6907)
-----------------
DNA (837bp)
protein (279aa)
dTDP-4-dehydrorhamnose reductase, RfbD (EC:1.1.1.133)
dTDP-4-dehydrorhamnose reductase n=1 Tax=Turicibacter sp. HGF1 RepID=F0HB80_9FIRM
dTDP-4-dehydrorhamnose reductase {ECO:0000313|EMBL:KKQ70892.1}; TaxID=1619055 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_38_36.;"
rmlD: dTDP-4-dehydrorhamnose reductase (db=HMMTigr db_id=TIGR01214 from=2 to=278 evalue=1.1e-97 interpro_id=IPR005913 interpro_description=dTDP-4-dehydrorhamnose reductase GO=Molecular Function: dTDP-4-dehydrorhamnose reductase activity (GO:0008831), Biological Process: extracellular polysaccharide biosynthetic process (GO:0045226))
gwc2_scaffold_710_9
zPERA2_38_36, Peregrinibacteria, Bacteria

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comp(6904..8154)
-----------------
DNA (1251bp)
protein (417aa)
Prolyl-tRNA synthetase n=1 Tax=Haloplasma contractile SSD-17B RepID=F7PY27_9BACT rbh
Prolyl-tRNA synthetase Tax=zPERA2_38_36
prolyl-tRNA synthetase
(db=HMMPfam db_id=PF00587 from=51 to=192 evalue=1.8e-29 interpro_id=IPR002314 interpro_description=Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: tRNA aminoacylation for protein translation (GO:0006418))
gwc2_scaffold_710_10
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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comp(8156..10318)
-----------------
DNA (2163bp)
protein (721aa)
Translation initiation factor IF-2 n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PQX0_9CLOT rbh
Translation initiation factor IF-2, translation initiation factor IF-2 {ECO:0000313|EMBL:KKR05158.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_G
initiation factor 2
Putative DNA-binding domain (db=superfamily db_id=SSF46955 from=139 to=187 evalue=0.00029 interpro_id=IPR009061 interpro_description=DNA binding domain, putative GO=Molecular Function: nucleotide binding (GO:0000166))
gwc2_scaffold_710_11
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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comp(10403..11491)
-----------------
DNA (1089bp)
protein (363aa)
Putative DNA recombination protein n=1 Tax=uncultured candidate division WWE3 bacterium EJ0ADIGA11YD11 RepID=B0KVA7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKR05159.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
hypothetical protein
seg (db=Seg db_id=seg from=3 to=18)
gwc2_scaffold_710_12
zPERA2_38_36, Peregrinibacteria, Bacteria

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11602..12300
-----------------
DNA (699bp)
protein (233aa)
Tax=zPERA2_38_36
gwc2_scaffold_710_13
zPERA2_38_36, Peregrinibacteria, Bacteria

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comp(12684..15506)
-----------------
DNA (2823bp)
protein (941aa)
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MLR2_9BACT rbh
Uncharacterized protein Tax=zPERA2_38_36
hypothetical protein
coiled-coil (db=Coil db_id=coil from=159 to=191 evalue=NA)
gwc2_scaffold_710_14
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists


comp(15583..16764)
-----------------
DNA (1182bp)
protein (394aa)
30S ribosomal protein S1 n=1 Tax=uncultured candidate division WWE3 bacterium EJ0ADIGA11YD11 RepID=B0KVD5_9BACT
30S ribosomal protein S1 Tax=zPERA2_38_36
30S ribosomal protein S1
coiled-coil (db=Coil db_id=coil from=370 to=391 evalue=NA)
gwc2_scaffold_710_15
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

17056..17955
-----------------
DNA (900bp)
protein (300aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR05163.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
gwc2_scaffold_710_16
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

comp(17974..20691)
-----------------
DNA (2718bp)
protein (906aa)
ATPase AAA-2 domain protein n=1 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=B8D094_HALOH rbh
ATPase AAA-2 domain-containing protein, ATP-dependent Clp protease ATP-binding subunit ClpC {ECO:0000313|EMBL:KKR05164.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacter
ATPase AAA
coiled-coil (db=Coil db_id=coil from=11 to=32 evalue=NA)
gwc2_scaffold_710_17
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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comp(20871..21746)
-----------------
DNA (876bp)
protein (292aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR05165.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=30)
gwc2_scaffold_710_18
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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comp(21707..22771)
-----------------
DNA (1065bp)
protein (355aa)
Holliday junction DNA helicase subunit RuvB, holliday junction DNA helicase RuvB {ECO:0000313|EMBL:KKR05166.1}; EC=3.6.4.12 {ECO:0000313|EMBL:KKR05166.1};; TaxID=1619062 species="Bacteria; Peregriniba
Holliday junction ATP-dependent DNA helicase RuvB n=2 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LYY5_CLOCD rbh
Holliday junction DNA helicase subunit RuvB
seg (db=Seg db_id=seg from=298 to=310)
gwc2_scaffold_710_19
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

comp(22779..23258)
-----------------
DNA (480bp)
protein (160aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR05167.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
seg (db=Seg db_id=seg from=52 to=70)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=41)
gwc2_scaffold_710_20
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

comp(23276..24136)
-----------------
DNA (861bp)
protein (287aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR05168.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=100 to=233 evalue=3.7e-06)
gwc2_scaffold_710_21
zPERA2_38_36, Peregrinibacteria, Bacteria

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24238..27720
-----------------
DNA (3483bp)
protein (1161aa)
seg Tax=zPERA2_38_36
coiled-coil (db=Coil db_id=coil from=1125 to=1146 evalue=NA)
seg (db=Seg db_id=seg from=1032 to=1046)
gwc2_scaffold_710_22
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

27779..28534
-----------------
DNA (756bp)
protein (252aa)
Tax=zPERA2_38_36
gwc2_scaffold_710_23
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

28652..29137
-----------------
DNA (486bp)
protein (162aa)
seg Tax=zPERA2_38_36
coiled-coil (db=Coil db_id=coil from=1 to=22 evalue=NA)
seg (db=Seg db_id=seg from=111 to=123)
gwc2_scaffold_710_24
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

comp(29485..31449)
-----------------
DNA (1965bp)
protein (655aa)
Cellulosome-anchoring protein n=1 Tax=sediment metagenome RepID=D9PNH4_9ZZZZ
Ig domain-containing protein {ECO:0000313|EMBL:KKR05172.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
s-layer domain-containing protein
seg (db=Seg db_id=seg from=29 to=44)
gwc2_scaffold_710_25
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

31454..31576
-----------------
DNA (123bp)
protein (41aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR05173.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
gwc2_scaffold_710_26
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

31566..32528
-----------------
DNA (963bp)
protein (321aa)
ATP-binding protein n=1 Tax=Leptotrichia goodfellowii F0264 RepID=D0GK85_9FUSO
Uncharacterized protein {ECO:0000313|EMBL:KKR05174.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
YjeE family ATPase
(db=HMMPfam db_id=PF01966 from=138 to=269 evalue=0.00013 interpro_id=IPR006674 interpro_description=Metal-dependent phosphohydrolase, HD subdomain GO=Molecular Function: phosphoric diester hydrolase activity (GO:0008081), Molecular Function: metal ion binding (GO:0046872))
gwc2_scaffold_710_27
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

comp(32508..32978)
-----------------
DNA (471bp)
protein (157aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR05175.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
coiled-coil (db=Coil db_id=coil from=37 to=65 evalue=NA)
gwc2_scaffold_710_28
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

comp(33036..34562)
-----------------
DNA (1527bp)
protein (509aa)
Possible sporulation protein SpoIID n=1 Tax=Caloramator australicus RC3 RepID=I7J649_9CLOT
SpoIID/LytB domain-containing protein {ECO:0000313|EMBL:KKR05176.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
SpoIID/LytB domain-containing protein
seg (db=Seg db_id=seg from=368 to=379)
gwc2_scaffold_710_29
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

34784..35266
-----------------
DNA (483bp)
protein (161aa)
seg Tax=zPERA2_38_36
seg (db=Seg db_id=seg from=79 to=84)
gwc2_scaffold_710_30
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

comp(35315..37789)
-----------------
DNA (2475bp)
protein (825aa)
Putative uncharacterized protein n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KS42_9BACT rbh
ATPase {ECO:0000313|EMBL:KKR05178.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
hypothetical protein
seg (db=Seg db_id=seg from=24 to=35)
Displaying items 1-30 of 38 in total

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