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gwc2_scaffold_1280

Alias: PER_GWC2_39_17_12

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Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwc2_scaffold_1280_1
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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151..939
-----------------
DNA (789bp)
protein (263aa)
Inositol-1-monophosphatase, myo-inositol-1(Or 4)-monophosphatase {ECO:0000313|EMBL:KKR04776.1}; EC=3.1.3.25 {ECO:0000313|EMBL:KKR04776.1};; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source
Inositol-1-monophosphatase n=33 Tax=pseudomallei group RepID=Q2SX85_BURTA
impA; protein ImpA
MYO INOSITOL MONOPHOSPHATASE (db=HMMPanther db_id=PTHR20854:SF4 from=64 to=257 evalue=1.3e-40)
gwc2_scaffold_1280_2
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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comp(980..1234)
-----------------
DNA (255bp)
protein (85aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR04777.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
gwc2_scaffold_1280_3
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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1688..2161
-----------------
DNA (474bp)
protein (158aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR04778.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=1 to=87 evalue=1.1e-09)
gwc2_scaffold_1280_4
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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2273..2698
-----------------
DNA (426bp)
protein (142aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR04779.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
GLYOXALASE_I_1 (db=PatternScan db_id=PS00934 from=19 to=40 evalue=0.0 interpro_id=IPR018146 interpro_description=Glyoxalase I, conserved site GO=Molecular Function: lactoylglutathione lyase activity (GO:0004462), Molecular Function: metal ion binding (GO:0046872))
(db=HMMPfam db_id=PF00903 from=16 to=130 evalue=1.3e-05 interpro_id=IPR004360 interpro_description=Glyoxalase/fosfomycin resistance/dioxygenase)
no description (db=Gene3D db_id=G3DSA:3.10.180.10 from=14 to=130 evalue=4.2e-14)
gwc2_scaffold_1280_5
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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2695..2943
-----------------
DNA (249bp)
protein (83aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR04780.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
gwc2_scaffold_1280_6
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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3005..4393
-----------------
DNA (1389bp)
protein (463aa)
TAP domain protein n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WXF8_PSEUU
TAP domain-containing protein {ECO:0000313|EMBL:KKR04781.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
cysteine proteinase
seg (db=Seg db_id=seg from=454 to=460)
gwc2_scaffold_1280_7
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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5033..5782
-----------------
DNA (750bp)
protein (250aa)
Uncharacterized protein n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q469E9_METBF
Hydrolase {ECO:0000313|EMBL:KKR04782.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
hydrolase
seg (db=Seg db_id=seg from=131 to=146)
gwc2_scaffold_1280_8
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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5802..6416
-----------------
DNA (615bp)
protein (205aa)
Putative uncharacterized protein n=1 Tax=Chlorobium ferrooxidans DSM 13031 RepID=Q0YS72_9CHLB
Uncharacterized protein {ECO:0000313|EMBL:KKR04783.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
hypothetical protein
(db=HMMPfam db_id=PF09942 from=3 to=82 evalue=1.2e-29 interpro_id=IPR019233 interpro_description=Domain of unknown function DUF2174, N-terminal)
gwc2_scaffold_1280_9
GWF2_OD1_41_16, Uhrbacteria, Parcubacteria, Bacteria

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6421..6831
-----------------
DNA (411bp)
protein (137aa)
Uncharacterized protein n=2 Tax=Vibrio furnissii RepID=F0M0S3_VIBFN
Uncharacterized protein {ECO:0000313|EMBL:KKR98286.1}; TaxID=1618997 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Uhrbacteria) bacterium GW2011_GWF2_41_16.;"
hypothetical protein
(db=HMMPfam db_id=PF09391 from=3 to=135 evalue=4.5e-37 interpro_id=IPR018988 interpro_description=Protein of unknown function DUF2000)
gwc2_scaffold_1280_10
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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7249..7725
-----------------
DNA (477bp)
protein (159aa)
TspO and MBR like protein n=1 Tax=Methanofollis liminatans DSM 4140 RepID=J1L4W0_9EURY
Uncharacterized protein {ECO:0000313|EMBL:KKR04785.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
benzodiazepine receptor TspO
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
gwc2_scaffold_1280_11
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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7924..8577
-----------------
DNA (654bp)
protein (218aa)
HAD-superfamily hydrolase, subfamily IA, variant 3 n=1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9B348_HERA2
Uncharacterized protein {ECO:0000313|EMBL:KKR04786.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
HAD family hydrolase
HAD-like (db=superfamily db_id=SSF56784 from=11 to=213 evalue=1.3e-25 interpro_id=IPR023214 interpro_description=HAD-like domain)
gwc2_scaffold_1280_12
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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8680..9213
-----------------
DNA (534bp)
protein (178aa)
Uncharacterized protein n=1 Tax=uncultured bacterium Bio5 RepID=B2BKB0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKR04787.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
hypothetical protein
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=1 to=176 evalue=3.5e-09)
gwc2_scaffold_1280_13
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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9203..9655
-----------------
DNA (453bp)
protein (151aa)
Pyrophosphohydrolase {ECO:0000313|EMBL:KKR04788.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
hypothetical protein
NUDIX_BOX (db=PatternScan db_id=PS00893 from=41 to=62 evalue=0.0 interpro_id=IPR020084 interpro_description=NUDIX hydrolase, conserved site GO=Molecular Function: hydrolase activity (GO:0016787))
(db=HMMPfam db_id=PF00293 from=9 to=122 evalue=2.1e-16 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
gwc2_scaffold_1280_14
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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comp(10157..11368)
-----------------
DNA (1212bp)
protein (404aa)
Glycosyl transferase group 1 n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F3ZXP8_MAHA5
Group 1 glycosyl transferase {ECO:0000313|EMBL:KKR04789.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
group 1 glycosyl transferase
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=31)
gwc2_scaffold_1280_15
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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11445..11777
-----------------
DNA (333bp)
protein (111aa)
Transcriptional regulator, ArsR family n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8PS74_METMA
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:KKR04790.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
HTHARSR (db=FPrintScan db_id=PR00778 from=25 to=40 evalue=1.7e-08 interpro_id=IPR001845 interpro_description=HTH ArsR-type DNA-binding domain GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
no description (db=HMMSmart db_id=SM00418 from=23 to=104 evalue=1.1e-13 interpro_id=IPR001845 interpro_description=HTH ArsR-type DNA-binding domain GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
gwc2_scaffold_1280_16
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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comp(11788..12003)
-----------------
DNA (216bp)
protein (72aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR04791.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
seg (db=Seg db_id=seg from=21 to=37)
gwc2_scaffold_1280_17
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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12032..13798
-----------------
DNA (1767bp)
protein (589aa)
Glycoside hydrolase family protein, beta-glucosidase {ECO:0000313|EMBL:KKR04792.1}; EC=3.2.1.21 {ECO:0000313|EMBL:KKR04792.1};; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinib
Glycoside hydrolase family 3 domain protein n=1 Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8GAK1_CHLAD rbh
glycoside hydrolase family protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
gwc2_scaffold_1280_18
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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comp(13869..15230)
-----------------
DNA (1362bp)
protein (454aa)
Pyrrolo-quinoline quinone n=1 Tax=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) RepID=A8ZTN6_DESOH
Pyrrolo-quinoline quinone {ECO:0000313|EMBL:KKR04793.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
Pyrrolo-quinoline quinone
seg (db=Seg db_id=seg from=19 to=34)
gwc2_scaffold_1280_19
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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comp(15484..17565)
-----------------
DNA (2082bp)
protein (694aa)
Prolyl oligopeptidase, prolyl oligopeptidase {ECO:0000313|EMBL:KKR04794.1}; EC=3.4.21.26 {ECO:0000313|EMBL:KKR04794.1};; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria
prolyl oligopeptidase (EC:3.4.21.26)
Serine protease, S9A family peptidase n=1 Tax=Caulobacter sp. AP07 RepID=J2GSI6_9CAUL rbh
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=22)
gwc2_scaffold_1280_20
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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comp(17743..18600)
-----------------
DNA (858bp)
protein (286aa)
Methylase involved in ubiquinone/menaquinone biosynthesis n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DHI5_SINAD
Type 11 methyltransferase {ECO:0000313|EMBL:KKR04795.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
methylase
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=103 to=280 evalue=2.3e-20)
gwc2_scaffold_1280_21
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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comp(18685..19158)
-----------------
DNA (474bp)
protein (158aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR04796.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
gwc2_scaffold_1280_22
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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comp(19170..20399)
-----------------
DNA (1230bp)
protein (410aa)
SufS subfamily cysteine desulfurase, cysteine desulfurase / selenocysteine lyase {ECO:0000313|EMBL:KKR04797.1}; EC=2.8.1.7 {ECO:0000313|EMBL:KKR04797.1};; TaxID=1619062 species="Bacteria; Peregrinibac
Cysteine desulfurase n=2 Tax=Thermoanaerobacterium thermosaccharolyticum RepID=D9TMM9_THETC rbh
cysteine desulfurase-like protein, SufS subfamily
seg (db=Seg db_id=seg from=273 to=283)
gwc2_scaffold_1280_23
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

comp(20362..20553)
-----------------
DNA (192bp)
protein (64aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR04798.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
seg (db=Seg db_id=seg from=6 to=28)
gwc2_scaffold_1280_24
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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20691..21434
-----------------
DNA (744bp)
protein (248aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR04799.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
seg (db=Seg db_id=seg from=195 to=205)
gwc2_scaffold_1280_25
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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comp(21500..22297)
-----------------
DNA (798bp)
protein (266aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR04800.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
gwc2_scaffold_1280_26
GWF2_OD1_41_16, Uhrbacteria, Parcubacteria, Bacteria

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22357..22737
-----------------
DNA (381bp)
protein (127aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR98268.1}; TaxID=1618997 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Uhrbacteria) bacterium GW2011_GWF2_41_16.;"
coiled-coil (db=Coil db_id=coil from=100 to=126 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=27 to=49)
seg (db=Seg db_id=seg from=74 to=93)
gwc2_scaffold_1280_27
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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comp(22789..23406)
-----------------
DNA (618bp)
protein (206aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR04802.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
vWA-like (db=superfamily db_id=SSF53300 from=21 to=162 evalue=1.2e-09)
gwc2_scaffold_1280_28
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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23559..24017
-----------------
DNA (459bp)
protein (153aa)
Histidine triad n=273 Tax=Enterobacteriaceae RepID=B4T634_SALNS
Uncharacterized protein {ECO:0000313|EMBL:KKR04803.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
hypothetical protein
HISTIDINE TRIAD (HIT) PROTEIN (db=HMMPanther db_id=PTHR23089 from=18 to=100 evalue=0.00031 interpro_id=IPR001310 interpro_description=Histidine triad (HIT) protein)
gwc2_scaffold_1280_29
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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24014..25045
-----------------
DNA (1032bp)
protein (344aa)
Putative uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) RepID=G5A9M2_PHYSP
Peptidase U61 LD-carboxypeptidase A {ECO:0000313|EMBL:KKR04804.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
peptidase U61 LD-carboxypeptidase A
Class I glutamine amidotransferase-like (db=superfamily db_id=SSF52317 from=1 to=171 evalue=1.1e-48)
gwc2_scaffold_1280_30
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists


comp(25085..26425)
-----------------
DNA (1341bp)
protein (447aa)
Aspartyl-tRNA synthetase, aspartyl-tRNA synthetase {ECO:0000313|EMBL:KKR04805.1}; EC=6.1.1.12 {ECO:0000313|EMBL:KKR04805.1};; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibac
aspartyl-tRNA synthetase, archaeal type (EC:6.1.1.12)
Aspartyl-tRNA synthetase n=1 Tax=Candidatus Aquiluna sp. IMCC13023 RepID=I0QZS2_9MICO rbh
seg (db=Seg db_id=seg from=403 to=417)
Displaying items 1-30 of 36 in total

View Taxonomy