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gwc2_scaffold_2055

Alias: PER_GWC2_39_17_13

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwc2_scaffold_2055_1
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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comp(449..1720)
-----------------
DNA (1272bp)
protein (424aa)
Trigger factor n=7 Tax=Caldicellulosiruptor RepID=TIG_CALBD
Trigger factor, trigger factor {ECO:0000313|EMBL:KKR04730.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
trigger factor
coiled-coil (db=Coil db_id=coil from=125 to=146 evalue=NA)
gwc2_scaffold_2055_2
zPERA2_38_36, Peregrinibacteria, Bacteria

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1809..4439
-----------------
DNA (2631bp)
protein (877aa)
seg Tax=zPERA2_38_36
coiled-coil (db=Coil db_id=coil from=443 to=471 evalue=NA)
seg (db=Seg db_id=seg from=101 to=113)
gwc2_scaffold_2055_3
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

4451..4822
-----------------
DNA (372bp)
protein (124aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR04732.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
coiled-coil (db=Coil db_id=coil from=99 to=120 evalue=NA)
gwc2_scaffold_2055_4
zPERA2_38_36, Peregrinibacteria, Bacteria

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4898..7393
-----------------
DNA (2496bp)
protein (832aa)
seg Tax=zPERA2_38_36
coiled-coil (db=Coil db_id=coil from=594 to=615 evalue=NA)
seg (db=Seg db_id=seg from=759 to=769)
gwc2_scaffold_2055_5
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

7518..8186
-----------------
DNA (669bp)
protein (223aa)
Putative uncharacterized protein n=1 Tax=sediment metagenome RepID=D9PKD2_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:KKR04734.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
hypothetical protein
Metalloproteases ("zincins"), catalytic domain (db=superfamily db_id=SSF55486 from=110 to=193 evalue=2.5e-06)
gwc2_scaffold_2055_6
zPERA2_38_36, Peregrinibacteria, Bacteria

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comp(8563..8739)
-----------------
DNA (177bp)
protein (59aa)
Tax=zPERA2_38_36
gwc2_scaffold_2055_7
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

comp(8982..9569)
-----------------
DNA (588bp)
protein (196aa)
Peptidase C60 family protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0HZU7_CALAS
Peptidase C60 family protein Tax=zPERA2_38_36
Sortase Surface protein transpeptidase
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=31)
gwc2_scaffold_2055_8
zPERA2_38_36, Peregrinibacteria, Bacteria

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comp(9586..11097)
-----------------
DNA (1512bp)
protein (504aa)
Uncharacterized protein n=1 Tax=Janthinobacterium sp. HH01 RepID=L9PM01_9BURK
Predicted protein Tax=zPERA2_38_36
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
gwc2_scaffold_2055_9
zPERA2_38_36, Peregrinibacteria, Bacteria

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comp(11129..11452)
-----------------
DNA (324bp)
protein (108aa)
seg Tax=zPERA2_38_36
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
seg (db=Seg db_id=seg from=8 to=22)
gwc2_scaffold_2055_10
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

comp(11488..11820)
-----------------
DNA (333bp)
protein (111aa)
Putative transcriptional regulator n=1 Tax=Brevibacillus sp. CF112 RepID=J2H9K0_9BACL
Putative transcriptional regulator Tax=zPERA2_38_36
hypothetical protein
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=1 to=91 evalue=1.8e-17)
gwc2_scaffold_2055_11
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

comp(11936..12922)
-----------------
DNA (987bp)
protein (329aa)
seg Tax=zPERA2_38_36
seg (db=Seg db_id=seg from=6 to=18)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=22 evalue=6.0)
gwc2_scaffold_2055_12
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

comp(12964..13113)
-----------------
DNA (150bp)
protein (50aa)
Putative uncharacterized protein n=1 Tax=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) RepID=A8ZV31_DESOH
Putative uncharacterized protein Tax=zPERA2_38_36
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=22)
gwc2_scaffold_2055_13
zPERA2_38_36, Peregrinibacteria, Bacteria

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comp(13141..13407)
-----------------
DNA (267bp)
protein (89aa)
seg Tax=zPERA2_38_36
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=29)
seg (db=Seg db_id=seg from=3 to=15)
gwc2_scaffold_2055_14
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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13558..14703
-----------------
DNA (1146bp)
protein (382aa)
Putative uncharacterized protein n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RM64_MOOTA rbh
Uncharacterized protein {ECO:0000313|EMBL:KKR04743.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
hypothetical protein
(db=HMMPfam db_id=PF05559 from=4 to=346 evalue=4.6e-113 interpro_id=IPR008482 interpro_description=Protein of unknown function DUF763)
gwc2_scaffold_2055_15
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

14764..15003
-----------------
DNA (240bp)
protein (80aa)
seg Tax=zPERA2_38_36
seg (db=Seg db_id=seg from=4 to=20)
gwc2_scaffold_2055_16
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

comp(15027..15650)
-----------------
DNA (624bp)
protein (208aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR04745.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
coiled-coil (db=Coil db_id=coil from=22 to=43 evalue=NA)
seg (db=Seg db_id=seg from=31 to=34)
gwc2_scaffold_2055_17
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists


comp(15672..15950)
-----------------
DNA (279bp)
protein (93aa)
50S ribosomal protein L27 n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U1Y1_9PROT
50S ribosomal protein L27 Tax=zPERA2_38_36
rpmA; Ribosomal protein L27
RIBOSOMAL_L27 (db=PatternScan db_id=PS00831 from=34 to=48 evalue=0.0 interpro_id=IPR018261 interpro_description=Ribosomal protein L27, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
gwc2_scaffold_2055_18
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

16092..17891
-----------------
DNA (1800bp)
protein (600aa)
LYTIC TRANSGLYCOSYLASE Tax=zPERA2_38_36
seg (db=Seg db_id=seg from=551 to=592)
LYTIC TRANSGLYCOSYLASE (db=HMMPanther db_id=PTHR21666:SF10 from=288 to=346 evalue=0.00084)
PEPTIDASE-RELATED (db=HMMPanther db_id=PTHR21666 from=288 to=346 evalue=0.00084)
gwc2_scaffold_2055_19
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

17967..19634
-----------------
DNA (1668bp)
protein (556aa)
Peptidase, M23 family n=1 Tax=Ruminococcus albus 8 RepID=E9SGZ9_RUMAL
Peptidase M23B {ECO:0000313|EMBL:KKR04748.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
lipoprotein
coiled-coil (db=Coil db_id=coil from=99 to=120 evalue=NA)
gwc2_scaffold_2055_20
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

19695..21389
-----------------
DNA (1695bp)
protein (565aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR04749.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
Glucocorticoid receptor-like (DNA-binding domain) (db=superfamily db_id=SSF57716 from=531 to=561 evalue=0.00053)
gwc2_scaffold_2055_21
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

21393..22013
-----------------
DNA (621bp)
protein (207aa)
Endonuclease III, endonuclease III {ECO:0000313|EMBL:KKR04750.1}; EC=4.2.99.18 {ECO:0000313|EMBL:KKR04750.1};; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium
endonuclease III (EC:4.2.99.18)
Endonuclease III n=1 Tax=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) RepID=B5YCZ3_DICT6
coiled-coil (db=Coil db_id=coil from=56 to=77 evalue=NA)
gwc2_scaffold_2055_22
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

comp(22031..22549)
-----------------
DNA (519bp)
protein (173aa)
Putative uncharacterized protein n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XR08_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKR04751.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
hypothetical protein
(db=HMMPfam db_id=PF02577 from=10 to=136 evalue=1.9e-36 interpro_id=IPR003729 interpro_description=Domain of unknown function DUF151)
gwc2_scaffold_2055_23
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

comp(22568..23668)
-----------------
DNA (1101bp)
protein (367aa)
Protein PyrD, dihydroorotate dehydrogenase (Fumarate) {ECO:0000313|EMBL:KKR04752.1}; EC=1.3.98.1 {ECO:0000313|EMBL:KKR04752.1};; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrini
Dihydroorotate dehydrogenase 2 (Fragment) n=1 Tax=Vibrio caribbenthicus ATCC BAA-2122 RepID=E3BPU2_9VIBR
Dihydroorotate dehydrogenase 2
seg (db=Seg db_id=seg from=200 to=215)
gwc2_scaffold_2055_24
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

comp(23719..24129)
-----------------
DNA (411bp)
protein (137aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR04753.1}; Flags: Fragment;; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
Displaying 24 items

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