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gwc2_scaffold_181

Alias: GWC2_PER_33_13_5

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Displaying items 1-30 of 127 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
GWC2_PER_33_13_5_1
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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comp(2..655)
-----------------
DNA (654bp)
protein (218aa)
Uncharacterized protein n=3 Tax=Paenibacillus mucilaginosus RepID=I0BIY6_9BACL rbh
Uncharacterized protein {ECO:0000313|EMBL:KKP40220.1}; Flags: Fragment;; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
hypothetical protein
TRAP-like (db=superfamily db_id=SSF51219 from=8 to=218 evalue=1.0e-71 interpro_id=IPR016031 interpro_description=Tryptophan RNA-binding attenuator protein-like)
GWC2_PER_33_13_5_2
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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comp(685..1350)
-----------------
DNA (666bp)
protein (222aa)
Pif1, pif, PIF1 5'-to-3' DNA helicase-like protein, ATP-dependent DNA helicase PIF1 {ECO:0000313|EMBL:KKP40221.1}; EC=3.6.4.12 {ECO:0000313|EMBL:KKP40221.1};; TaxID=1619061 species="Bacteria; Peregrin
ATP-dependent DNA helicase PIF1 n=5 Tax=Xenopus RepID=PIF1_XENLA
conjugal transfer relaxase TraA
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=6 to=221 evalue=1.9e-21)
GWC2_PER_33_13_5_3
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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1357..1851
-----------------
DNA (495bp)
protein (165aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP40222.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=3 to=153 evalue=0.00082)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=3 to=138 evalue=1.0e-05)
GWC2_PER_33_13_5_4
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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1808..2242
-----------------
DNA (435bp)
protein (145aa)
Site specific recombinase n=1 Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=B5YIK4_THEYD
Site specific recombinase {ECO:0000313|EMBL:KKP40223.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
site specific recombinase
DNA breaking-rejoining enzymes (db=superfamily db_id=SSF56349 from=1 to=134 evalue=1.6e-34 interpro_id=IPR011010 interpro_description=DNA breaking-rejoining enzyme, catalytic core GO=Molecular Function: DNA binding (GO:0003677))
GWC2_PER_33_13_5_5
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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comp(2550..2792)
-----------------
DNA (243bp)
protein (81aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP40224.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
GWC2_PER_33_13_5_6
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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2966..3229
-----------------
DNA (264bp)
protein (88aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP40225.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
seg (db=Seg db_id=seg from=24 to=36)
GWC2_PER_33_13_5_7
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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3262..4053
-----------------
DNA (792bp)
protein (264aa)
Metallophosphoesterase n=1 Tax=Burkholderia cenocepacia (strain MC0-3) RepID=B1K1B3_BURCC
Metallophosphoesterase {ECO:0000313|EMBL:KKP40226.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
calcineurin-like phosphoesterase family protein
Metallo-dependent phosphatases (db=superfamily db_id=SSF56300 from=1 to=243 evalue=1.4e-16)
GWC2_PER_33_13_5_8
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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comp(4112..5425)
-----------------
DNA (1314bp)
protein (438aa)
Uncharacterized protein n=2 Tax=Pelosinus fermentans RepID=I9BTH6_9FIRM rbh
Uncharacterized protein {ECO:0000313|EMBL:KKP40227.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
protein of unknown function DUF4143
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=2 to=227 evalue=1.8e-19)
GWC2_PER_33_13_5_9
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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comp(5592..5990)
-----------------
DNA (399bp)
protein (133aa)
UPF0332 protein TM_1000 n=3 Tax=Thermotoga RepID=YA00_THEMA
Uncharacterized protein {ECO:0000313|EMBL:KKP40228.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=39 to=58)
GWC2_PER_33_13_5_10
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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comp(5977..6300)
-----------------
DNA (324bp)
protein (108aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP40229.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
no description (db=Gene3D db_id=G3DSA:3.30.460.10 from=1 to=66 evalue=0.00096)
(db=HMMPfam db_id=PF01909 from=22 to=83 evalue=1.0e-10 interpro_id=IPR002934 interpro_description=Nucleotidyl transferase domain GO=Molecular Function: nucleotidyltransferase activity (GO:0016779))
Nucleotidyltransferase (db=superfamily db_id=SSF81301 from=6 to=87 evalue=2.1e-12)
GWC2_PER_33_13_5_11
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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6507..6833
-----------------
DNA (327bp)
protein (109aa)
Uncharacterized protein n=1 Tax=Thermosipho melanesiensis (strain BI429 / DSM 12029) RepID=A6LM00_THEM4
Uncharacterized protein {ECO:0000313|EMBL:KKP40230.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
hypothetical protein
GWC2_PER_33_13_5_12
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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6959..7723
-----------------
DNA (765bp)
protein (255aa)
Uncharacterized protein n=1 Tax=Bacillus thuringiensis MC28 RepID=K0G1R0_BACTU
Uncharacterized protein {ECO:0000313|EMBL:KKP40231.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=55 to=72)
GWC2_PER_33_13_5_13
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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7810..8730
-----------------
DNA (921bp)
protein (307aa)
Uncharacterized protein n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8ENF8_RUNSL rbh
Uncharacterized protein {ECO:0000313|EMBL:KKP40232.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
hypothetical protein
seg (db=Seg db_id=seg from=158 to=169)
GWC2_PER_33_13_5_14
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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comp(8742..9146)
-----------------
DNA (405bp)
protein (135aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP40233.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
(db=HMMPfam db_id=PF01878 from=34 to=128 evalue=1.5e-06 interpro_id=IPR002740 interpro_description=EVE domain)
PUA domain-like (db=superfamily db_id=SSF88697 from=34 to=133 evalue=4.0e-12 interpro_id=IPR015947 interpro_description=PUA-like domain)
GWC2_PER_33_13_5_15
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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comp(9198..11948)
-----------------
DNA (2751bp)
protein (917aa)
Restriction endonuclease BseMII n=1 Tax=Geobacillus stearothermophilus RepID=Q9APD6_GEOSE rbh
Uncharacterized protein {ECO:0000313|EMBL:KKP40234.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
hypothetical protein
coiled-coil (db=Coil db_id=coil from=466 to=494 evalue=NA)
GWC2_PER_33_13_5_16
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

Not on your lists

comp(11939..12790)
-----------------
DNA (852bp)
protein (284aa)
Phage DNA methylase, modification methylase {ECO:0000313|EMBL:KKP40235.1}; EC=2.1.1.72 {ECO:0000313|EMBL:KKP40235.1};; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria b
M.BspCNI n=1 Tax=Bacillus sp. 1310(2010) RepID=E5Q8U7_9BACI rbh
phage DNA methylase
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=3 to=255 evalue=1.3e-40)
GWC2_PER_33_13_5_17
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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comp(12998..13573)
-----------------
DNA (576bp)
protein (192aa)
Resolvase domain containing protein n=1 Tax=Clostridium sp. DL-VIII RepID=G7LXB3_9CLOT
Transposon Tn21 resolvase {ECO:0000313|EMBL:KKP40236.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
transposon Tn21 resolvase
no description (db=Gene3D db_id=G3DSA:3.40.50.1390 from=7 to=123 evalue=2.0e-33 interpro_id=IPR006119 interpro_description=Resolvase, N-terminal GO=Molecular Function: recombinase activity (GO:0000150), Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310))
GWC2_PER_33_13_5_18
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

Not on your lists

comp(13766..13909)
-----------------
DNA (144bp)
protein (48aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP40237.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
GWC2_PER_33_13_5_19
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

Not on your lists

14164..15381
-----------------
DNA (1218bp)
protein (406aa)
KWG repeat protein n=1 Tax=Cylindrospermum stagnale PCC 7417 RepID=K9X2H0_9NOST
Uncharacterized protein {ECO:0000313|EMBL:KKP40238.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=43 to=61)
GWC2_PER_33_13_5_20
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

Not on your lists

15524..16228
-----------------
DNA (705bp)
protein (235aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP40239.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
(db=HMMPfam db_id=PF01402 from=48 to=81 evalue=4.2e-05 interpro_id=IPR002145 interpro_description=CopG-like DNA-binding GO=Molecular Function: DNA binding (GO:0003677), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
GWC2_PER_33_13_5_21
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

Not on your lists

16529..16987
-----------------
DNA (459bp)
protein (153aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP40240.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
GWC2_PER_33_13_5_22
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

Not on your lists

17105..17368
-----------------
DNA (264bp)
protein (88aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP40241.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
GWC2_PER_33_13_5_23
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

Not on your lists

17881..19293
-----------------
DNA (1413bp)
protein (471aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP40242.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
coiled-coil (db=Coil db_id=coil from=168 to=189 evalue=NA)
seg (db=Seg db_id=seg from=241 to=257)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=232 to=364 evalue=4.9e-06)
GWC2_PER_33_13_5_24
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

Not on your lists

19531..19701
-----------------
DNA (171bp)
protein (57aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP40243.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
(db=HMMPfam db_id=PF05930 from=4 to=49 evalue=0.00025 interpro_id=IPR010260 interpro_description=Bacteriophage P4, Orf88)
excise: DNA binding domain, excisionase fami (db=HMMTigr db_id=TIGR01764 from=4 to=52 evalue=2.4e-07 interpro_id=IPR010093 interpro_description=Excisionase/Xis, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
GWC2_PER_33_13_5_25
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

Not on your lists

19827..21002
-----------------
DNA (1176bp)
protein (392aa)
Phage integrase n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UWI5_9AQUI
Integrase family protein {ECO:0000313|EMBL:KKP40244.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
phage integrase family protein
(db=HMMPfam db_id=PF00589 from=184 to=360 evalue=1.1e-28 interpro_id=IPR002104 interpro_description=Integrase, catalytic GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310), Biological Process: DNA integration (GO:0015074))
GWC2_PER_33_13_5_26
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

Not on your lists

comp(21041..22777)
-----------------
DNA (1737bp)
protein (579aa)
RNA-directed DNA polymerase, RNA-directed DNA polymerase {ECO:0000313|EMBL:KKP40245.1}; EC=2.7.7.49 {ECO:0000313|EMBL:KKP40245.1};; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregr
RNA-directed DNA polymerase n=2 Tax=Cyanothece RepID=G6GYI3_9CHRO
putative Trypsin-like serine proteases
coiled-coil (db=Coil db_id=coil from=363 to=384 evalue=NA)
GWC2_PER_33_13_5_27
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

Not on your lists

23171..23923
-----------------
DNA (753bp)
protein (251aa)
Putative uncharacterized protein n=1 Tax=Coprobacillus sp. 3_3_56FAA RepID=G9R6H5_9FIRM
NERD domain-containing protein {ECO:0000313|EMBL:KKP40246.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
NERD domain-containing protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=19 to=41)
GWC2_PER_33_13_5_28
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

Not on your lists

comp(24624..24794)
-----------------
DNA (171bp)
protein (57aa)
Uncharacterized protein n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KP96_HALH1
Uncharacterized protein {ECO:0000313|EMBL:KKP40247.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
GWC2_PER_33_13_5_29
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

Not on your lists

25064..25399
-----------------
DNA (336bp)
protein (112aa)
Transposase IS3/IS911 family protein n=1 Tax=Prosthecochloris vibrioformis (strain DSM 265) RepID=A4SFR0_PROVI
Transposase IS3/IS911 family protein, transposase {ECO:0000313|EMBL:KKP40248.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
transposase IS3/IS911 family protein
(db=HMMPfam db_id=PF01527 from=4 to=82 evalue=5.9e-09 interpro_id=IPR002514 interpro_description=Transposase IS3/IS911family GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transposase activity (GO:0004803), Biological Process: transposition, DNA-mediated (GO:0006313))
GWC2_PER_33_13_5_30
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

Not on your lists

25389..25685
-----------------
DNA (297bp)
protein (99aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP40249.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
seg (db=Seg db_id=seg from=67 to=78)
Displaying items 1-30 of 127 in total

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