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gwc2_scaffold_570

Alias: GWC2_PER_33_13_12

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
GWC2_PER_33_13_12_1
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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199..765
-----------------
DNA (567bp)
protein (189aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP39128.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=31)
seg (db=Seg db_id=seg from=13 to=28)
GWC2_PER_33_13_12_2
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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938..1330
-----------------
DNA (393bp)
protein (131aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP39129.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
seg (db=Seg db_id=seg from=47 to=65)
GWC2_PER_33_13_12_3
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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1330..1743
-----------------
DNA (414bp)
protein (138aa)
Probable ribonuclease VapC n=1 Tax=Corynebacterium genitalium ATCC 33030 RepID=D7W9M1_9CORY
Twitching motility protein PilT {ECO:0000313|EMBL:KKP39130.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
PilT protein domain-containing protein
PIN domain-like (db=superfamily db_id=SSF88723 from=1 to=135 evalue=1.5e-24)
GWC2_PER_33_13_12_4
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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1893..2489
-----------------
DNA (597bp)
protein (199aa)
Putative uncharacterized protein n=1 Tax=Planctomyces brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448) RepID=F0SHX6_PLABD
General secretory pathway protein G, type II secretion system, general secretion pathway protein G {ECO:0000313|EMBL:KKP39131.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrin
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=32)
GWC2_PER_33_13_12_5
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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2622..3194
-----------------
DNA (573bp)
protein (191aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP39132.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
seg (db=Seg db_id=seg from=13 to=28)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
IV_pilin_GFxxxE: prepilin-type N-term (db=HMMTigr db_id=TIGR02532 from=9 to=32 evalue=0.0024 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
GWC2_PER_33_13_12_6
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

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3875..4555
-----------------
DNA (681bp)
protein (227aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP36782.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
seg (db=Seg db_id=seg from=196 to=207)
GWC2_PER_33_13_12_7
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

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4744..5658
-----------------
DNA (915bp)
protein (305aa)
Endopeptidase LytF n=1 Tax=Sporosarcina newyorkensis 2681 RepID=F9DXX6_9BACL
Endopeptidase LytF {ECO:0000313|EMBL:KKP36783.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
hypothetical protein
seg (db=Seg db_id=seg from=263 to=275)
GWC2_PER_33_13_12_8
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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5746..7473
-----------------
DNA (1728bp)
protein (576aa)
Family 3 adenylate cyclase n=2 Tax=Rhizobium RepID=I9N6W7_RHILT
Uncharacterized protein {ECO:0000313|EMBL:KKP39135.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
hypothetical protein
coiled-coil (db=Coil db_id=coil from=68 to=89 evalue=NA)
GWC2_PER_33_13_12_9
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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7486..7635
-----------------
DNA (150bp)
protein (50aa)
id=5091448 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
GWC2_PER_33_13_12_10
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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7719..8570
-----------------
DNA (852bp)
protein (284aa)
seg Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
seg (db=Seg db_id=seg from=8 to=21)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
GWC2_PER_33_13_12_11
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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comp(8615..8932)
-----------------
DNA (318bp)
protein (106aa)
Uncharacterized protein n=7 Tax=Acinetobacter RepID=N8RUQ0_9GAMM
yvaE; small multidrug resistance protein, SMR family; K03297 small multidrug resistance protein, SMR family Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
yvaE; small multidrug resistance protein, SMR family; K03297 small multidrug resistance protein, SMR family
seg (db=Seg db_id=seg from=4 to=20)
GWC2_PER_33_13_12_12
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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comp(8932..10707)
-----------------
DNA (1776bp)
protein (592aa)
glucosamine/fructose-6-phosphate aminotransferase; K00820 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [EC:2.6.1.16] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
glucosamine-fructose-6-phosphate aminotransferase isomerizing (EC:2.6.1.16)
Glucosamine/fructose-6-phosphate aminotransferase, isomerizing n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CER7_THET1 rbh
coiled-coil (db=Coil db_id=coil from=255 to=283 evalue=NA)
GWC2_PER_33_13_12_13
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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comp(10948..12024)
-----------------
DNA (1077bp)
protein (359aa)
peptidase M24; K01262 Xaa-Pro aminopeptidase [EC:3.4.11.9] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
Xaa-Pro aminopeptidase n=1 Tax=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) RepID=Q8RAE3_THETN
peptidase M24
seg (db=Seg db_id=seg from=129 to=140)
GWC2_PER_33_13_12_14
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

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comp(12118..12687)
-----------------
DNA (570bp)
protein (190aa)
Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AGC0_IGNAJ
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000313|EMBL:KKP36789.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
ruvA; Holliday junction resolvasome DNA-binding subunit
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=1 to=62 evalue=1.0e-20 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
GWC2_PER_33_13_12_15
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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comp(12745..13860)
-----------------
DNA (1116bp)
protein (372aa)
queuine tRNA-ribosyltransferase (EC:2.4.2.29); K00773 queuine tRNA-ribosyltransferase [EC:2.4.2.29] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
queuine tRNA-ribosyltransferase (EC:2.4.2.29)
tRNA-guanine transglycosylase n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CEE8_9CLOT rbh
tRNA-guanine transglycosylase (db=superfamily db_id=SSF51713 from=1 to=367 evalue=1.5e-145 interpro_id=IPR002616 interpro_description=Queuine/other tRNA-ribosyltransferase GO=Biological Process: tRNA modification (GO:0006400), Molecular Function: queuine tRNA-ribosyltransferase activity (GO:0008479), Biological Process: queuosine biosynthetic process (GO:0008616))
GWC2_PER_33_13_12_16
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(13933..14028)
-----------------
DNA (96bp)
protein (32aa)
id=5091455 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
GWC2_PER_33_13_12_17
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists


comp(14057..14380)
-----------------
DNA (324bp)
protein (108aa)
50S ribosomal protein L31 n=1 Tax=uncultured marine bacterium 311 RepID=Q6SHU3_9BACT
50S ribosomal protein L31 {ECO:0000313|EMBL:KKP36791.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
50S ribosomal protein L31
seg (db=Seg db_id=seg from=86 to=107)
GWC2_PER_33_13_12_18
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

Not on your lists


comp(14432..17029)
-----------------
DNA (2598bp)
protein (866aa)
Gyrase subunit alpha, DNA gyrase subunit A protein {ECO:0000313|EMBL:KKP39145.1}; EC=5.99.1.3 {ECO:0000313|EMBL:KKP39145.1};; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibac
gyrA; DNA gyrase (subunit A) (EC:5.99.1.3)
DNA gyrase subunit A n=2 Tax=Saccharobacteria RepID=UPI00017435BD rbh
coiled-coil (db=Coil db_id=coil from=466 to=487 evalue=NA)
GWC2_PER_33_13_12_19
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists

17156..17605
-----------------
DNA (450bp)
protein (150aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP36794.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
GWC2_PER_33_13_12_20
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(17602..18108)
-----------------
DNA (507bp)
protein (169aa)
shikimate kinase (EC:2.7.1.71)
Shikimate kinase 1 n=1 Tax=Providencia rustigianii DSM 4541 RepID=D1P5V0_9ENTR
Shikimate kinase 1 {ECO:0000313|EMBL:KKP36795.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
seg (db=Seg db_id=seg from=77 to=96)
GWC2_PER_33_13_12_21
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(18112..19407)
-----------------
DNA (1296bp)
protein (432aa)
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=planctomycete KSU-1 RepID=I3IMG3_9PLAN rbh
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000313|EMBL:KKP36796.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
3-phosphoshikimate 1-carboxyvinyltransferase
seg (db=Seg db_id=seg from=59 to=72)
GWC2_PER_33_13_12_22
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(19407..20477)
-----------------
DNA (1071bp)
protein (357aa)
3-dehydroquinate synthase (EC:4.2.3.4)
3-dehydroquinate synthase n=1 Tax=Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) RepID=F8AD96_THEID
3-dehydroquinate synthase {ECO:0000313|EMBL:KKP36797.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
seg (db=Seg db_id=seg from=55 to=65)
GWC2_PER_33_13_12_23
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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comp(20555..21628)
-----------------
DNA (1074bp)
protein (358aa)
Phospho-2-dehydro-3-deoxyheptonate aldolase, 3-deoxy-7-phosphoheptulonate synthase {ECO:0000313|EMBL:KKP39150.1}; EC=2.5.1.54 {ECO:0000313|EMBL:KKP39150.1};; TaxID=1619061 species="Bacteria; Peregrini
phospho-2-dehydro-3-deoxyheptonate aldolase (EC:2.5.1.54)
Phospho-2-dehydro-3-deoxyheptonate aldolase n=8 Tax=Caldicellulosiruptor RepID=A4XMY2_CALS8 rbh
seg (db=Seg db_id=seg from=2 to=23)
GWC2_PER_33_13_12_24
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

22113..22943
-----------------
DNA (831bp)
protein (277aa)
tatD; Mg-dependent DNase; K03424 TatD DNase family protein [EC:3.1.21.-] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
Mg-dependent DNase n=1 Tax=Methylacidiphilum infernorum (isolate V4) RepID=B3E084_METI4
tatD; Mg-dependent DNase
seg (db=Seg db_id=seg from=159 to=172)
GWC2_PER_33_13_12_25
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(22938..25226)
-----------------
DNA (2289bp)
protein (763aa)
coiled-coil Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
coiled-coil (db=Coil db_id=coil from=162 to=190 evalue=NA)
seg (db=Seg db_id=seg from=98 to=118)
GWC2_PER_33_13_12_26
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

25564..27684
-----------------
DNA (2121bp)
protein (707aa)
seg Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
seg (db=Seg db_id=seg from=504 to=518)
GWC2_PER_33_13_12_27
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

Not on your lists


27754..29532
-----------------
DNA (1779bp)
protein (593aa)
Arginyl-tRNA synthetase, arginyl-tRNA synthetase {ECO:0000313|EMBL:KKP39154.1}; EC=6.1.1.19 {ECO:0000313|EMBL:KKP39154.1};; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacte
argS; arginyl-tRNA synthetase (EC:6.1.1.19)
arginyl-tRNA ligase n=1 Tax=Marinilabilia salmonicolor JCM 21150 RepID=UPI000299D27C rbh
coiled-coil (db=Coil db_id=coil from=189 to=222 evalue=NA)
GWC2_PER_33_13_12_28
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

Not on your lists

comp(29630..30967)
-----------------
DNA (1338bp)
protein (446aa)
DNA repair protein radA n=2 Tax=Lachnospiraceae RepID=F3ABY8_9FIRM rbh
Repair protein RadA, DNA repair protein RadA/Sms protein {ECO:0000313|EMBL:KKP39155.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
DNA repair protein RadA
AAA-FAMILY ATPASE (db=HMMPanther db_id=PTHR23077 from=89 to=210 evalue=0.00069)
GWC2_PER_33_13_12_29
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

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comp(31059..31886)
-----------------
DNA (828bp)
protein (276aa)
inositol-1-monophosphatase (EC:3.1.3.25)
Inositol-1-monophosphatase n=1 Tax=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) RepID=B5YDK6_DICT6
Inositol-1-monophosphatase {ECO:0000313|EMBL:KKP36805.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
IMP_1 (db=PatternScan db_id=PS00629 from=81 to=94 evalue=0.0 interpro_id=IPR020583 interpro_description=Inositol monophosphatase, metal-binding site)
GWC2_PER_33_13_12_30
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(31890..32486)
-----------------
DNA (597bp)
protein (199aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP36806.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
seg (db=Seg db_id=seg from=13 to=41)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
(db=HMMPfam db_id=PF08334 from=38 to=115 evalue=2.3e-07 interpro_id=IPR013545 interpro_description=Type II secretion system protein G)
Displaying items 1-30 of 49 in total

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