ggKbase home page

gwc2_scaffold_1332

Alias: GWC2_PER_33_13_15

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
GWC2_PER_33_13_15_1
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists

335..952
-----------------
DNA (618bp)
protein (206aa)
LexA repressor n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XUB4_9BACT
LexA repressor {ECO:0000313|EMBL:KKP36503.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
repressor
LexA/Signal peptidase (db=superfamily db_id=SSF51306 from=80 to=204 evalue=1.2e-33 interpro_id=IPR015927 interpro_description=Peptidase S24/S26A/S26B/S26C)
GWC2_PER_33_13_15_2
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(1457..1795)
-----------------
DNA (339bp)
protein (113aa)
Uncharacterized protein n=1 Tax=Streptomyces tsukubaensis NRRL18488 RepID=I2N2L8_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:KKP36504.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
(db=HMMPfam db_id=PF03479 from=2 to=109 evalue=1.4e-10 interpro_id=IPR005175 interpro_description=Domain of unknown function DUF296)
AF0104/ALDC/Ptd012-like (db=superfamily db_id=SSF117856 from=1 to=110 evalue=3.3e-13)
GWC2_PER_33_13_15_3
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

Not on your lists

1845..2861
-----------------
DNA (1017bp)
protein (339aa)
Probable dual-specificity RNA methyltransferase RlmN n=1 Tax=Desulfurobacterium thermolithotrophum (strain DSM 11699 / BSA) RepID=F0S3B4_DESTD
50S rRNA methyltransferase {ECO:0000313|EMBL:KKP38770.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
ribosomal RNA large subunit methyltransferase N
seg (db=Seg db_id=seg from=261 to=276)
GWC2_PER_33_13_15_4
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists

2940..5432
-----------------
DNA (2493bp)
protein (831aa)
DNA mismatch repair protein MutS n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AWP3_9CLOT rbh
Mismatch repair protein MutS protein {ECO:0000313|EMBL:KKP36506.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
DNA mismatch repair protein MutS
coiled-coil (db=Coil db_id=coil from=505 to=526 evalue=NA)
GWC2_PER_33_13_15_5
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists

5458..7272
-----------------
DNA (1815bp)
protein (605aa)
DNA mismatch repair protein MutL n=1 Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0ALG1_IGNAJ rbh
Mismatch repair protein MutL protein {ECO:0000313|EMBL:KKP36507.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
mutL; DNA mismatch repair protein
seg (db=Seg db_id=seg from=464 to=474)
GWC2_PER_33_13_15_6
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(7395..9557)
-----------------
DNA (2163bp)
protein (721aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP36508.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
seg (db=Seg db_id=seg from=81 to=90)
GWC2_PER_33_13_15_7
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

Not on your lists

comp(9566..11404)
-----------------
DNA (1839bp)
protein (613aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP38774.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
coiled-coil (db=Coil db_id=coil from=14 to=35 evalue=NA)
seg (db=Seg db_id=seg from=3 to=39)
transmembrane_regions (db=TMHMM db_id=tmhmm from=40 to=62)
GWC2_PER_33_13_15_8
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists


11526..13316
-----------------
DNA (1791bp)
protein (597aa)
alanyl-tRNA synthetase (EC:6.1.1.7); K01872 alanyl-tRNA synthetase [EC:6.1.1.7] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
alanyl-tRNA synthetase (EC:6.1.1.7)
Alanine--tRNA ligase n=1 Tax=Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228) RepID=E1R5B6_SPISS rbh
coiled-coil (db=Coil db_id=coil from=330 to=383 evalue=NA)
GWC2_PER_33_13_15_9
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(13456..13608)
-----------------
DNA (153bp)
protein (51aa)
seg Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
seg (db=Seg db_id=seg from=1 to=19)
GWC2_PER_33_13_15_10
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

Not on your lists

comp(13605..14963)
-----------------
DNA (1359bp)
protein (453aa)
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=2 Tax=Thermoanaerobacterium RepID=F6BLM8_THEXL rbh
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB, bifunctional enzyme involved in thiolation and methylation of tRNA {ECO:0000313|EMBL:KKP38777.1}; TaxID=1619061 species="Bacteria; Peregriniba
(dimethylallyl)adenosine tRNA methylthiotransferase MiaB
coiled-coil (db=Coil db_id=coil from=50 to=71 evalue=NA)
GWC2_PER_33_13_15_11
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(15003..15536)
-----------------
DNA (534bp)
protein (178aa)
coiled-coil Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
coiled-coil (db=Coil db_id=coil from=120 to=141 evalue=NA)
seg (db=Seg db_id=seg from=3 to=22)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
GWC2_PER_33_13_15_12
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(15557..16114)
-----------------
DNA (558bp)
protein (186aa)
Uncharacterized protein n=1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9B5Y8_HERA2
Uncharacterized protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
hypothetical protein
seg (db=Seg db_id=seg from=44 to=49)
GWC2_PER_33_13_15_13
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(16180..17313)
-----------------
DNA (1134bp)
protein (378aa)
Glycosyl transferase group 1 n=1 Tax=Methanotorris igneus (strain DSM 5666 / JCM 11834 / Kol 5) RepID=F6BAX0_METIK
group 1 glycosyl transferase Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
group 1 glycosyl transferase
MANNOSYLTRANSFERASE (db=HMMPanther db_id=PTHR12526:SF29 from=4 to=374 evalue=1.9e-51)
GWC2_PER_33_13_15_14
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(17315..18175)
-----------------
DNA (861bp)
protein (287aa)
UPI00026C7635 related cluster n=1 Tax=unknown RepID=UPI00026C7635
UDP-diphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase {ECO:0000313|EMBL:KKP36517.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_
murG2; UDP-diphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase
seg (db=Seg db_id=seg from=41 to=59)
GWC2_PER_33_13_15_15
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(18300..19514)
-----------------
DNA (1215bp)
protein (405aa)
Cell division protein FtsW n=1 Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8G5Y0_CHLAD
cell division protein FtsW; K03588 cell division protein FtsW Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
cell division protein FtsW
seg (db=Seg db_id=seg from=93 to=108)
GWC2_PER_33_13_15_16
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

19743..20759
-----------------
DNA (1017bp)
protein (339aa)
phosphoribosylaminoimidazolecarboxamide formyltransferase; K06863 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase [EC:6.3.4.-] Tax=RIFOXYA2_FULL_Peregrinibacter
5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase n=1 Tax=Thermococcus barophilus (strain DSM 11836 / MP) RepID=F0LLH7_THEBM rbh
phosphoribosylaminoimidazolecarboxamide formyltransferase
(db=HMMPfam db_id=PF06973 from=166 to=337 evalue=2.4e-72 interpro_id=IPR009720 interpro_description=IMP biosynthesis enzyme PurP, C-terminal GO=Molecular Function: magnesium ion binding (GO:0000287), Molecular Function: ATP binding (GO:0005524), Biological Process: IMP biosynthetic process (GO:0006188), Molecular Function: ligase activity, forming carbon-nitrogen bonds (GO:0016879))
GWC2_PER_33_13_15_17
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists

20832..22016
-----------------
DNA (1185bp)
protein (395aa)
ATP-utilizing enzymes of ATP-grasp superfamily (Probably carboligase) n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-N05 RepID=M7T917_9EURY rbh
Uncharacterized protein {ECO:0000313|EMBL:KKP36519.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase
(db=HMMPfam db_id=PF06849 from=21 to=153 evalue=4.3e-37 interpro_id=IPR010672 interpro_description=IMP biosynthesis enzyme PurP, N-terminal GO=Molecular Function: magnesium ion binding (GO:0000287), Molecular Function: ATP binding (GO:0005524), Biological Process: IMP biosynthetic process (GO:0006188), Molecular Function: ligase activity, forming carbon-nitrogen bonds (GO:0016879))
GWC2_PER_33_13_15_18
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

Not on your lists

22030..23352
-----------------
DNA (1323bp)
protein (441aa)
Nucleotidyl transferase, bifunctional UDP-N-acetylglucosamine pyrophosphorylase / Glucosamine-1-phosphate N-acetyltransferase {ECO:0000313|EMBL:KKP38785.1}; EC=2.7.7.23 {ECO:0000313|EMBL:KKP38785.1};;
Nucleotidyl transferase n=1 Tax=Acidianus hospitalis (strain W1) RepID=F4B8A9_ACIHW
nucleotidyltransferase
seg (db=Seg db_id=seg from=347 to=363)
GWC2_PER_33_13_15_19
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

23374..24309
-----------------
DNA (936bp)
protein (312aa)
methyltransferase (EC:2.1.1.-)
Predicted methyltransferase n=1 Tax=Methanothermobacter marburgensis (strain DSM 2133 / 14651 / NBRC 100331 / OCM 82 / Marburg) RepID=D9PVW2_METTM
type 11 methyltransferase Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
seg (db=Seg db_id=seg from=198 to=210)
GWC2_PER_33_13_15_20
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

24380..24613
-----------------
DNA (234bp)
protein (78aa)
Uncharacterized protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I0U8_CALAS
hypothetical protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
putative regulatory protein, FmdB family
seg (db=Seg db_id=seg from=57 to=77)
GWC2_PER_33_13_15_21
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(24621..25442)
-----------------
DNA (822bp)
protein (274aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP36523.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
coiled-coil (db=Coil db_id=coil from=240 to=261 evalue=NA)
seg (db=Seg db_id=seg from=64 to=75)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
GWC2_PER_33_13_15_22
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(25435..25896)
-----------------
DNA (462bp)
protein (154aa)
Lipoprotein signal peptidase n=1 Tax=Desulfotomaculum gibsoniae DSM 7213 RepID=G6IA30_9FIRM
lipoprotein signal peptidase Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
lipoprotein signal peptidase
seg (db=Seg db_id=seg from=62 to=79)
GWC2_PER_33_13_15_23
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(25898..26713)
-----------------
DNA (816bp)
protein (272aa)
undecaprenol kinase; K06153 undecaprenyl-diphosphatase [EC:3.6.1.27] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
Undecaprenyl-diphosphatase n=1 Tax=Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) RepID=F8ABS6_THEID
undecaprenol kinase
seg (db=Seg db_id=seg from=221 to=238)
GWC2_PER_33_13_15_24
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(26718..28268)
-----------------
DNA (1551bp)
protein (517aa)
phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (EC:2.1.2.3); K00602 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] T
phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (EC:2.1.2.3)
Bifunctional purine biosynthesis protein PurH n=12 Tax=Thermoanaerobacter RepID=PUR9_THEP3 rbh
coiled-coil (db=Coil db_id=coil from=154 to=175 evalue=NA)
GWC2_PER_33_13_15_25
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(28289..28573)
-----------------
DNA (285bp)
protein (95aa)
Putative membrane protein insertion efficiency factor n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UZM3_9AQUI
hypothetical protein; K08998 hypothetical protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
membrane protein
(db=HMMPfam db_id=PF01809 from=20 to=93 evalue=3.7e-22 interpro_id=IPR002696 interpro_description=Protein of unknown function DUF37)
GWC2_PER_33_13_15_26
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

28762..29418
-----------------
DNA (657bp)
protein (219aa)
id=5091590 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
GWC2_PER_33_13_15_27
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(29546..29965)
-----------------
DNA (420bp)
protein (140aa)
id=5091591 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
GWC2_PER_33_13_15_28
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(29974..30306)
-----------------
DNA (333bp)
protein (111aa)
CsaA protein n=1 Tax=Roseibium sp. TrichSKD4 RepID=E2CIF5_9RHOB
Non-chaperonin molecular chaperone ATPase; K06878 tRNA-binding protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
csaA; methionine--tRNA ligase protein
no description (db=Gene3D db_id=G3DSA:2.40.50.140 from=1 to=110 evalue=4.3e-32 interpro_id=IPR012340 interpro_description=Nucleic acid-binding, OB-fold)
Displaying 28 items

View Taxonomy