ggKbase home page

gwe2_scaffold_2919

Alias: PER_GWE2_39_6_25

Search features with annotation key words

Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwe2_scaffold_2919_1
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(1..396)
-----------------
DNA (396bp)
protein (132aa)
seg Tax=PER_GWF2_39_17
seg (db=Seg db_id=seg from=2 to=21)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
coiled-coil (db=Coil db_id=coil from=82 to=103 evalue=NA)
gwe2_scaffold_2919_2
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(461..934)
-----------------
DNA (474bp)
protein (158aa)
Tax=PER_GWF2_39_17
gwe2_scaffold_2919_3
Peregrinibacteria bacterium GW2011_GWE2_39_6, Peregrinibacteria, Bacteria

Not on your lists


comp(921..1379)
-----------------
DNA (459bp)
protein (153aa)
30S ribosomal protein S7 n=1 Tax=Alkalilimnicola ehrlichei (strain MLHE-1) RepID=RS7_ALHEH
30S ribosomal protein S7, small subunit ribosomal protein S7 {ECO:0000313|EMBL:KKR25906.1}; TaxID=1619064 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWE2_39_6.;
30S ribosomal protein S7
RIBOSOMAL_S7 (db=PatternScan db_id=PS00052 from=15 to=41 evalue=0.0 interpro_id=IPR020606 interpro_description=Ribosomal protein S7, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412))
gwe2_scaffold_2919_4
Peregrinibacteria bacterium GW2011_GWE2_39_6, Peregrinibacteria, Bacteria

Not on your lists


comp(1423..1839)
-----------------
DNA (417bp)
protein (139aa)
30S ribosomal protein S12 n=1 Tax=Mesoplasma florum (strain ATCC 33453 / NBRC 100688 / NCTC 11704 / L1) RepID=RS12_MESFL
30S ribosomal protein S12, small subunit ribosomal protein S12 {ECO:0000313|EMBL:KKR25907.1}; TaxID=1619064 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWE2_39_6
rpsL; 30S ribosomal protein S12
RIBOSOMAL_S12 (db=PatternScan db_id=PS00055 from=56 to=63 evalue=0.0 interpro_id=IPR006032 interpro_description=Ribosomal protein S12/S23 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
gwe2_scaffold_2919_5
Peregrinibacteria bacterium GW2011_GWE2_39_6, Peregrinibacteria, Bacteria

Not on your lists

comp(1927..5751)
-----------------
DNA (3825bp)
protein (1275aa)
DNA-directed RNA polymerase subunit beta', DNA-directed RNA polymerase subunit beta {ECO:0000313|EMBL:KKR25908.1}; EC=2.7.7.6 {ECO:0000313|EMBL:KKR25908.1};; TaxID=1619064 species="Bacteria; Peregrini
rpoC; DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=8 Tax=Dehalococcoides mccartyi RepID=RPOC_DEHSC rbh
beta and beta-prime subunits of DNA dependent RNA-polymerase (db=superfamily db_id=SSF64484 from=5 to=1262 evalue=0.0)
gwe2_scaffold_2919_6
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(5797..6312)
-----------------
DNA (516bp)
protein (172aa)
Single-stranded DNA-binding protein n=2 Tax=Methylotenera RepID=D7DNA2_METS0
single-strand-binding protein; K03111 single-strand DNA-binding protein Tax=PER_GWF2_39_17
hypothetical protein
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=2 to=147 evalue=1.7e-41 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
gwe2_scaffold_2919_7
Peregrinibacteria bacterium GW2011_GWE2_39_6, Peregrinibacteria, Bacteria

Not on your lists

comp(6382..9945)
-----------------
DNA (3564bp)
protein (1188aa)
DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta {ECO:0000313|EMBL:KKR25910.1}; EC=2.7.7.6 {ECO:0000313|EMBL:KKR25910.1};; TaxID=1619064 species="Bacteria; Peregrinib
DNA-directed RNA polymerase subunit beta n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C2J8_SPHTD rbh
DNA-directed RNA polymerase subunit beta
beta and beta-prime subunits of DNA dependent RNA-polymerase (db=superfamily db_id=SSF64484 from=19 to=1128 evalue=0.0)
gwe2_scaffold_2919_8
Peregrinibacteria bacterium GW2011_GWE2_39_6, Peregrinibacteria, Bacteria

Not on your lists

comp(10351..10881)
-----------------
DNA (531bp)
protein (177aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR25911.1}; Flags: Fragment;; TaxID=1619064 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWE2_39_6.;"
Xylose isomerase-like (db=superfamily db_id=SSF51658 from=1 to=175 evalue=5.8e-10 interpro_id=IPR013022 interpro_description=Xylose isomerase-like, TIM barrel domain)
Displaying 8 items

View Taxonomy