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gwf2_scaffold_1473

Alias: PER_GWF2_33_10_9

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwf2_scaffold_1473_1
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

273..1070
DNA (798bp) protein (266aa)
seg Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
seg (db=Seg db_id=seg from=104 to=124)
gwf2_scaffold_1473_2
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

1164..1679
DNA (516bp) protein (172aa)
seg Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
seg (db=Seg db_id=seg from=118 to=129)
gwf2_scaffold_1473_3
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(1691..5074)
DNA (3384bp) protein (1128aa)
seg Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
seg (db=Seg db_id=seg from=283 to=303)
gwf2_scaffold_1473_4
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(5126..7486)
DNA (2361bp) protein (787aa)
coiled-coil Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
coiled-coil (db=Coil db_id=coil from=22 to=43 evalue=NA)
seg (db=Seg db_id=seg from=70 to=87)
gwf2_scaffold_1473_5
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(7555..8043)
DNA (489bp) protein (163aa)
seg Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
seg (db=Seg db_id=seg from=4 to=21)
gwf2_scaffold_1473_6
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

8288..8797
DNA (510bp) protein (170aa)
id=5094392 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
gwf2_scaffold_1473_7
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

8937..11009
DNA (2073bp) protein (691aa)
ligA; NAD(+)-dependent DNA ligase (EC:6.5.1.2); K01972 DNA ligase (NAD+) [EC:6.5.1.2] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
ligA; NAD(+)-dependent DNA ligase (EC:6.5.1.2)
DNA ligase n=1 Tax=Tetragenococcus halophilus (strain DSM 20338 / JCM 20259 / NCIMB 9735 / NBRC 12172) RepID=G4L8C0_TETHN rbh
DNA_LIGASE_N2 (db=PatternScan db_id=PS01056 from=306 to=321 evalue=0.0 interpro_id=IPR018239 interpro_description=NAD-dependent DNA ligase, active site GO=Molecular Function: DNA ligase (NAD+) activity (GO:0003911), Biological Process: DNA replication (GO:0006260), Biological Process: DNA repair (GO:0006281))
gwf2_scaffold_1473_8
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

11016..12422
DNA (1407bp) protein (469aa)
Cation diffusion facilitator family transporter n=1 Tax=Chlorobium phaeobacteroides (strain DSM 266) RepID=A1BEH1_CHLPD rbh
cation diffusion facilitator family transporter Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
cation diffusion facilitator family transporter
coiled-coil (db=Coil db_id=coil from=336 to=357 evalue=NA)
gwf2_scaffold_1473_9
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

12476..12868
DNA (393bp) protein (131aa)
id=5094395 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
gwf2_scaffold_1473_10
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

12906..13574
DNA (669bp) protein (223aa)
id=5094396 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
gwf2_scaffold_1473_11
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

13915..16035
DNA (2121bp) protein (707aa)
seg Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
seg (db=Seg db_id=seg from=78 to=89)
transmembrane_regions (db=TMHMM db_id=tmhmm from=23 to=45)
gwf2_scaffold_1473_12
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

16102..17034
DNA (933bp) protein (311aa)
hemK; protein methyltransferase HemK (EC:2.1.1.-) Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
hemK; protein methyltransferase HemK (EC:2.1.1.-)
Methylase of polypeptide chain release factor n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AYJ2_9CLOT
seg (db=Seg db_id=seg from=17 to=27)
gwf2_scaffold_1473_13
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

17148..18209
DNA (1062bp) protein (354aa)
Peptide chain release factor 1 n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CCP5_THET1 rbh
peptide chain release factor 1; K02835 peptide chain release factor 1 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
peptide chain release factor 1
RF_PROK_I (db=PatternScan db_id=PS00745 from=225 to=241 evalue=0.0 interpro_id=IPR000352 interpro_description=Peptide chain release factor class I/class II GO=Molecular Function: translation release factor activity (GO:0003747), Biological Process: translational termination (GO:0006415))
gwf2_scaffold_1473_14
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

18363..19298
DNA (936bp) protein (312aa)
Coproporphyrinogen III oxidase, oxygen-independent coproporphyrinogen III oxidase {ECO:0000313|EMBL:KKP39190.1}; EC=1.3.99.22 {ECO:0000313|EMBL:KKP39190.1};; TaxID=1619065 species="Bacteria; Peregrini
Radical SAM domain protein n=1 Tax=Turneriella parva (strain ATCC BAA-1111 / DSM 21527 / NCTC 11395 / H) RepID=I4B0U6_TURPD
coproporphyrinogen III oxidase and related Fe-S oxidoreductase
Radical SAM enzymes (db=superfamily db_id=SSF102114 from=24 to=299 evalue=1.6e-45)
gwf2_scaffold_1473_15
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

19303..19770
DNA (468bp) protein (156aa)
hemN2; oxygen-independent coproporphyrinogen-III oxidase HemN (EC:1.3.99.22) Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
hemN2; oxygen-independent coproporphyrinogen-III oxidase HemN (EC:1.3.99.22)
Fe-S oxidoreductase, coproporphyrinogen III oxidase n=2 Tax=Clostridium RepID=K6TVJ9_9CLOT
Radical SAM enzymes (db=superfamily db_id=SSF102114 from=20 to=141 evalue=2.2e-11)
gwf2_scaffold_1473_16
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

19773..20540
DNA (768bp) protein (256aa)
Radical SAM domain protein n=1 Tax=Turneriella parva (strain ATCC BAA-1111 / DSM 21527 / NCTC 11395 / H) RepID=I4BA70_TURPD
Radical SAM domain protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
Radical SAM domain protein
Radical SAM enzymes (db=superfamily db_id=SSF102114 from=10 to=250 evalue=2.1e-10)
gwf2_scaffold_1473_17
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

20558..21142
DNA (585bp) protein (195aa)
PHOSPHOGLYCERATE MUTASE Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
no description (db=Gene3D db_id=G3DSA:3.40.50.1240 from=14 to=189 evalue=2.3e-22)
(db=HMMPfam db_id=PF00300 from=15 to=163 evalue=2.0e-18 interpro_id=IPR013078 interpro_description=Histidine phosphatase superfamily, clade-1)
PHOSPHOGLYCERATE MUTASE (db=HMMPanther db_id=PTHR23029 from=41 to=181 evalue=3.0e-15)
gwf2_scaffold_1473_18
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(21179..22675)
DNA (1497bp) protein (499aa)
nadB; L-aspartate oxidase; K00278 L-aspartate oxidase [EC:1.4.3.16] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
L-aspartate oxidase n=1 Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A4Y6_PELCD rbh
nadB; L-aspartate oxidase
coiled-coil (db=Coil db_id=coil from=396 to=431 evalue=NA)
gwf2_scaffold_1473_19
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(22696..23247)
DNA (552bp) protein (184aa)
HD domain protein n=1 Tax=delta proteobacterium NaphS2 RepID=D8FDE7_9DELT
hypothetical protein; K07023 putative hydrolases of HD superfamily Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
hypothetical protein
no description (db=HMMSmart db_id=SM00471 from=26 to=141 evalue=0.0096 interpro_id=IPR003607 interpro_description=Metal-dependent phosphohydrolase, HD domain GO=Molecular Function: catalytic activity (GO:0003824))
gwf2_scaffold_1473_20
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(23390..26533)
DNA (3144bp) protein (1048aa)
Putative uncharacterized protein n=1 Tax=Eubacterium infirmum F0142 RepID=H1PLP6_9FIRM
protein-export membrane protein SecD; K12257 SecD/SecF fusion protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
protein-export membrane protein SecD
coiled-coil (db=Coil db_id=coil from=266 to=287 evalue=NA)
gwf2_scaffold_1473_21
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(26608..26982)
DNA (375bp) protein (125aa)
Cupin 2 domain-containing protein n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F661_CONWI
cupin Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
cupin
seg (db=Seg db_id=seg from=34 to=41)
gwf2_scaffold_1473_22
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

27392..28528
DNA (1137bp) protein (379aa)
Lipoprotein, putative n=152 Tax=Vibrio RepID=A3GPU5_VIBCL
hypothetical protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
hypothetical protein
seg (db=Seg db_id=seg from=80 to=98)
gwf2_scaffold_1473_23
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(28534..29502)
DNA (969bp) protein (323aa)
tryptophanyl-tRNA synthetase (EC:6.1.1.2); K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
tryptophanyl-tRNA synthetase (EC:6.1.1.2)
Tryptophan--tRNA ligase n=1 Tax=Ilyobacter polytropus (strain DSM 2926 / CuHBu1) RepID=E3H8R2_ILYPC rbh
coiled-coil (db=Coil db_id=coil from=270 to=298 evalue=NA)
gwf2_scaffold_1473_24
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

29763..30158
DNA (396bp) protein (132aa)
PROKAR_LIPOPROTEIN Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
coiled-coil (db=Coil db_id=coil from=63 to=95 evalue=NA)
seg (db=Seg db_id=seg from=4 to=19)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=20 evalue=6.0)
gwf2_scaffold_1473_25
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(30212..32425)
DNA (2214bp) protein (738aa)
priA; primosomal protein N'; K04066 primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
Uncharacterized protein n=2 Tax=Clostridium kluyveri RepID=A5N7X9_CLOK5 rbh
priA; primosome assembly protein PriA
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=190 to=386 evalue=0.00028)
gwf2_scaffold_1473_26
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

32619..33554
DNA (936bp) protein (312aa)
id=5094412 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
gwf2_scaffold_1473_27
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(33698..34909)
DNA (1212bp) protein (404aa)
ADP-ribosylglycohydrolase superfamily n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZX79_9BACT
ADPribosylglycohydrolase superfamily protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
ADP-RIBOSYLGLYCOHYDROLASE (db=HMMPanther db_id=PTHR16222 from=47 to=399 evalue=1.2e-13)
(db=HMMPfam db_id=PF03747 from=64 to=378 evalue=1.7e-36 interpro_id=IPR005502 interpro_description=ADP-ribosylation/Crystallin J1)
gwf2_scaffold_1473_28
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(34934..35974)
DNA (1041bp) protein (347aa)
id=5094414 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
Displaying 28 items

View Taxonomy