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gwf2_scaffold_1978

Alias: PER_GWF2_33_10_14

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Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwf2_scaffold_1978_1
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

3..683
DNA (681bp) protein (227aa)
NAD+ synthetase (EC:6.3.1.5) Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
NAD+ synthetase (EC:6.3.1.5)
NH(3)-dependent NAD(+) synthetase n=2 Tax=Legionella longbeachae RepID=D3HS55_LEGLN
seg (db=Seg db_id=seg from=8 to=19)
gwf2_scaffold_1978_2
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

1199..1945
DNA (747bp) protein (249aa)
seg Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
seg (db=Seg db_id=seg from=2 to=13)
gwf2_scaffold_1978_3
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(1947..3458)
DNA (1512bp) protein (504aa)
coiled-coil Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
coiled-coil (db=Coil db_id=coil from=424 to=484 evalue=NA)
seg (db=Seg db_id=seg from=419 to=436)
gwf2_scaffold_1978_4
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(3455..5446)
DNA (1992bp) protein (664aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP38657.1}; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_33_10.;"
no description (db=HMMSmart db_id=SM00382 from=89 to=233 evalue=0.00064 interpro_id=IPR003593 interpro_description=ATPase, AAA+ type, core GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: nucleoside-triphosphatase activity (GO:0017111))
coiled-coil (db=Coil db_id=coil from=6 to=27 evalue=NA)
seg (db=Seg db_id=seg from=507 to=519)
gwf2_scaffold_1978_5
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(5427..6062)
DNA (636bp) protein (212aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP38658.1}; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_33_10.;"
seg (db=Seg db_id=seg from=78 to=92)
gwf2_scaffold_1978_6
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(6108..10568)
DNA (4461bp) protein (1487aa)
Ribosome-binding protein 1 n=1 Tax=Tupaia chinensis RepID=L9KUP1_TUPCH
Mature-parasite-infected erythrocyte surface antigen {ECO:0000313|EMBL:KKP38659.1}; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_33_10.;"
hypothetical protein
coiled-coil (db=Coil db_id=coil from=59 to=80 evalue=NA)
gwf2_scaffold_1978_7
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(10808..11704)
DNA (897bp) protein (299aa)
Prothrombin n=1 Tax=Pteropus alecto RepID=L5KXF6_PTEAL
Prothrombin Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
TRYPSIN_HIS (db=PatternScan db_id=PS00134 from=66 to=71 evalue=0.0 interpro_id=IPR018114 interpro_description=Peptidase S1/S6, chymotrypsin/Hap, active site GO=Molecular Function: serine-type endopeptidase activity (GO:0004252), Biological Process: proteolysis (GO:0006508))
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
gwf2_scaffold_1978_8
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(11818..12627)
DNA (810bp) protein (270aa)
Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PVF4_9BACT rbh
Zinc/iron permease {ECO:0000313|EMBL:KKP38661.1}; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_33_10.;"
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
gwf2_scaffold_1978_9
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(12572..13003)
DNA (432bp) protein (144aa)
Ferric uptake regulation protein n=5 Tax=Brevibacillus RepID=C0ZC47_BREBN
fur; ferric uptake regulation protein; K03711 Fur family transcriptional regulator, ferric uptake regulator Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
fur; ferric uptake regulation protein
(db=HMMPfam db_id=PF01475 from=13 to=107 evalue=1.5e-12 interpro_id=IPR002481 interpro_description=Ferric-uptake regulator GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
gwf2_scaffold_1978_10
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(13080..14438)
DNA (1359bp) protein (453aa)
UDP-N-acetylmuramyl tripeptide synthetase; K01928 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase n=1 Tax=Thermincola potens (strain JR) RepID=D5X9A6_THEPJ rbh
UDP-N-acetylmuramyl tripeptide synthetase
coiled-coil (db=Coil db_id=coil from=153 to=174 evalue=NA)
gwf2_scaffold_1978_11
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(14617..15006)
DNA (390bp) protein (130aa)
riboflavin biosynthesis protein RibF; K11753 riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
Riboflavin biosynthesis protein RibF n=4 Tax=Leptospira RepID=K5BQP4_LEPME
riboflavin biosynthesis protein RibF
RIBOFLAVIN KINASE/FMN ADENYLYLTRANSFERASE (db=HMMPanther db_id=PTHR22749 from=2 to=128 evalue=1.2e-23 interpro_id=IPR023468 interpro_description=Riboflavin kinase)
gwf2_scaffold_1978_12
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

15132..15449
DNA (318bp) protein (106aa)
PROKAR_LIPOPROTEIN Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
seg (db=Seg db_id=seg from=82 to=102)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=25 evalue=6.0)
gwf2_scaffold_1978_13
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(15672..16604)
DNA (933bp) protein (311aa)
Orotidine 5'-phosphate decarboxylase n=1 Tax=Halobacteroides halobius (strain ATCC 35273 / DSM 5150 / MD-1) RepID=L0K798_HALHC rbh
orotidine 5''-phosphate decarboxylase, subfamily 2 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
orotidine 5''-phosphate decarboxylase, subfamily 2
OMPDECASE (db=PatternScan db_id=PS00156 from=103 to=116 evalue=0.0 interpro_id=IPR018089 interpro_description=Orotidine 5'-phosphate decarboxylase, active site GO=Molecular Function: orotidine-5'-phosphate decarboxylase activity (GO:0004590), Biological Process: 'de novo' pyrimidine base biosynthetic process (GO:0006207))
gwf2_scaffold_1978_14
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(16622..17263)
DNA (642bp) protein (214aa)
Orotate phosphoribosyltransferase, orotate phosphoribosyltransferase {ECO:0000313|EMBL:KKP38667.1}; EC=2.4.2.10 {ECO:0000313|EMBL:KKP38667.1};; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" so
orotate phosphoribosyltransferase (EC:2.4.2.10)
Orotate phosphoribosyltransferase n=6 Tax=Fusobacterium RepID=E5BGS5_9FUSO
seg (db=Seg db_id=seg from=70 to=84)
gwf2_scaffold_1978_15
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

17384..17674
DNA (291bp) protein (97aa)
id=5094589 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
gwf2_scaffold_1978_16
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(17741..18496)
DNA (756bp) protein (252aa)
Transcriptional regulator, TrmB n=1 Tax=sediment metagenome RepID=D9PL89_9ZZZZ
transcriptional regulator TrmB Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
iclR helix-turn-helix domain protein
seg (db=Seg db_id=seg from=90 to=102)
gwf2_scaffold_1978_17
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(18514..19491)
DNA (978bp) protein (326aa)
Uncharacterized protein n=1 Tax=Bacteroides oleiciplenus YIT 12058 RepID=K9DX87_9BACE rbh
Filamentation induced by cAMP protein fic {ECO:0000313|EMBL:KKP38670.1}; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_33_10.;"
filamentation induced by cAMP protein fic
DOC_P1: death-on-curing family protein (db=HMMTigr db_id=TIGR01550 from=191 to=315 evalue=2.8e-06 interpro_id=IPR006440 interpro_description=Addiction module killer protein Doc)
gwf2_scaffold_1978_18
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

19819..21573
DNA (1755bp) protein (585aa)
Caib/baif family protein n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q08VI8_STIAD
Caib/baif family protein {ECO:0000313|EMBL:KKP38671.1}; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_33_10.;"
seg (db=Seg db_id=seg from=181 to=192)
gwf2_scaffold_1978_19
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

21617..22297
DNA (681bp) protein (227aa)
Alanine racemase domain protein n=1 Tax=Geitlerinema sp. PCC 7407 RepID=K9S487_9CYAN
Uncharacterized protein {ECO:0000313|EMBL:KKP38672.1}; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_33_10.;"
alanine racemase
coiled-coil (db=Coil db_id=coil from=43 to=71 evalue=NA)
gwf2_scaffold_1978_20
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(22312..23259)
DNA (948bp) protein (316aa)
Uncharacterized protein n=1 Tax=Methanofollis liminatans DSM 4140 RepID=J1L4A9_9EURY rbh
Uncharacterized protein {ECO:0000313|EMBL:KKP38673.1}; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_33_10.;"
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=22)
gwf2_scaffold_1978_21
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(23506..24141)
DNA (636bp) protein (212aa)
SNARE associated golgi family protein n=2 Tax=Desulfovibrio RepID=G7Q755_9DELT
dedA; DedA transmembrane protein; K03975 membrane-associated protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=24 to=46)
gwf2_scaffold_1978_22
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(24231..25670)
DNA (1440bp) protein (480aa)
Glutamyl-tRNA(Gln) amidotransferase subunit A, aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A {ECO:0000313|EMBL:KKP38675.1}; EC=6.3.5.6 {ECO:0000313|EMBL:KKP38675.1};; TaxID=1619065
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) RepID=F8AB35_THEID rbh
glutamyl-tRNA(Gln) amidotransferase subunit A
AMIDASES (db=PatternScan db_id=PS00571 from=152 to=183 evalue=0.0 interpro_id=IPR020556 interpro_description=Amidase, conserved site)
gwf2_scaffold_1978_23
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(25748..26044)
DNA (297bp) protein (99aa)
gatC; asparaginyl/glutamyl-tRNA amidotransferase subunit C (EC:6.3.5.7) Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
gatC1; aspartyl/glutamyl-tRNA amidotransferase subunit C (EC:6.3.5.-)
Asparaginyl/glutamyl-tRNA amidotransferase subunit C n=1 Tax=Bacillus sp. 1NLA3E RepID=N0AUM5_9BACI
gatC: glutamyl-tRNA(Gln) and/or aspartyl-tRN (db=HMMTigr db_id=TIGR00135 from=2 to=98 evalue=1.0e-18 interpro_id=IPR003837 interpro_description=Glu-tRNAGln amidotransferase, C subunit GO=Biological Process: regulation of translational fidelity (GO:0006450))
gwf2_scaffold_1978_24
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

26133..26489
DNA (357bp) protein (119aa)
transmembrane_regions Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
transmembrane_regions (db=TMHMM db_id=tmhmm from=26 to=45)
gwf2_scaffold_1978_25
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

26492..26908
DNA (417bp) protein (139aa)
Cytidyltransferase-related enzyme n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-N05 RepID=M7TW70_9EURY
cytidyltransferase; K14656 FAD synthetase Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
cytidyltransferase
cyt_tran_rel: cytidyltransferase-related (db=HMMTigr db_id=TIGR00125 from=3 to=69 evalue=1.1e-13 interpro_id=IPR004821 interpro_description=Cytidyltransferase-related GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: biosynthetic process (GO:0009058))
gwf2_scaffold_1978_26
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

26901..27797
DNA (897bp) protein (299aa)
UPI0002889E1A related cluster n=1 Tax=unknown RepID=UPI0002889E1A
ftsX; cell-division protein FtsX; K09811 cell division transport system permease protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
ftsX; cell-division protein FtsX
transmembrane_regions (db=TMHMM db_id=tmhmm from=25 to=47)
gwf2_scaffold_1978_27
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

27843..28610
DNA (768bp) protein (256aa)
Recombination protein O, RecO Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
(db=HMMPfam db_id=PF02565 from=85 to=239 evalue=0.00023 interpro_id=IPR003717 interpro_description=Recombination protein O, RecO GO=Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310))
reco: DNA repair protein RecO (db=HMMTigr db_id=TIGR00613 from=5 to=247 evalue=1.4e-07 interpro_id=IPR003717 interpro_description=Recombination protein O, RecO GO=Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310))
(db=HMMPfam db_id=PF11967 from=2 to=66 evalue=1.5e-13 interpro_id=IPR022572 interpro_description=DNA replication/recombination mediator RecO, N-terminal)
gwf2_scaffold_1978_28
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(28564..30723)
DNA (2160bp) protein (720aa)
(p)ppGpp synthetase I SpoT/RelA; K00951 GTP pyrophosphokinase [EC:2.7.6.5] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
(p)ppGpp synthetase I SpoT/RelA (EC:2.7.6.5)
(P)ppGpp synthetase I, SpoT/RelA n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9RXP5_THEOJ
coiled-coil (db=Coil db_id=coil from=104 to=125 evalue=NA)
gwf2_scaffold_1978_29
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(30811..32988)
DNA (2178bp) protein (726aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP38682.1}; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_33_10.;"
hypothetical protein LOC100360267
coiled-coil (db=Coil db_id=coil from=311 to=332 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=441 to=463)
gwf2_scaffold_1978_30
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(33065..33346)
DNA (282bp) protein (94aa)
Methylated-DNA-protein-cysteine methyltransferase, methylated-DNA-[protein]-cysteine S-methyltransferase {ECO:0000313|EMBL:KKP38683.1}; EC=2.1.1.63 {ECO:0000313|EMBL:KKP38683.1};; TaxID=1619065 specie
Methylated-DNA--protein-cysteine methyltransferase n=1 Tax=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) RepID=A6UR60_METVS
methylated-DNA--protein-cysteine methyltransferase
MGMT (db=PatternScan db_id=PS00374 from=51 to=57 evalue=0.0 interpro_id=IPR001497 interpro_description=Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO=Molecular Function: methylated-DNA-[protein]-cysteine S-methyltransferase activity (GO:0003908), Biological Process: DNA repair (GO:0006281))
Displaying items 1-30 of 33 in total

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