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gwf2_scaffold_2066

Alias: PER_GWF2_33_10_17

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwf2_scaffold_2066_1
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(181..957)
DNA (777bp) protein (259aa)
Elongation factor Ts n=1 Tax=Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378) RepID=C7LR50_DESBD
translation elongation factor Ts; K02357 elongation factor Ts Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
translation elongation factor Ts
seg (db=Seg db_id=seg from=60 to=71)
gwf2_scaffold_2066_2
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(1050..1739)
DNA (690bp) protein (230aa)
transmembrane_regions Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
transmembrane_regions (db=TMHMM db_id=tmhmm from=76 to=94)
seg (db=Seg db_id=seg from=12 to=25)
(db=HMMPfam db_id=PF09685 from=81 to=173 evalue=2.2e-06 interpro_id=IPR019109 interpro_description=Uncharacterised protein family Ycf60)
gwf2_scaffold_2066_3
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists


comp(1741..2463)
DNA (723bp) protein (241aa)
30S ribosomal protein S2 n=13 Tax=Thermoanaerobacteraceae RepID=RS2_THEPX
rpsB; 30S ribosomal protein S2; K02967 small subunit ribosomal protein S2 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
rpsB; 30S ribosomal protein S2
RIBOSOMAL_S2_2 (db=PatternScan db_id=PS00963 from=167 to=191 evalue=0.0 interpro_id=IPR018130 interpro_description=Ribosomal protein S2, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
gwf2_scaffold_2066_4
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

2683..2946
DNA (264bp) protein (88aa)
Chorismate mutase Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
Chorismate mutase II (db=superfamily db_id=SSF48600 from=2 to=81 evalue=1.1e-12 interpro_id=IPR020822 interpro_description=Chorismate mutase, type II GO=Biological Process: chorismate metabolic process (GO:0046417))
(db=HMMPfam db_id=PF01817 from=8 to=85 evalue=1.2e-12 interpro_id=IPR020822 interpro_description=Chorismate mutase, type II GO=Biological Process: chorismate metabolic process (GO:0046417))
no description (db=HMMSmart db_id=SM00830 from=8 to=87 evalue=5.9e-10 interpro_id=IPR002701 interpro_description=Chorismate mutase GO=Biological Process: chorismate metabolic process (GO:0046417))
gwf2_scaffold_2066_5
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

3002..3511
DNA (510bp) protein (170aa)
ATPase-like, ATP-binding domain Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
no description (db=Gene3D db_id=G3DSA:3.30.565.10 from=14 to=167 evalue=3.0e-09 interpro_id=IPR003594 interpro_description=ATPase-like, ATP-binding domain GO=Molecular Function: ATP binding (GO:0005524))
(db=HMMPfam db_id=PF02518 from=53 to=157 evalue=5.9e-06 interpro_id=IPR003594 interpro_description=ATPase-like, ATP-binding domain GO=Molecular Function: ATP binding (GO:0005524))
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase (db=superfamily db_id=SSF55874 from=48 to=168 evalue=7.1e-08 interpro_id=IPR003594 interpro_description=ATPase-like, ATP-binding domain GO=Molecular Function: ATP binding (GO:0005524))
gwf2_scaffold_2066_6
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

3529..3906
DNA (378bp) protein (126aa)
Anti-sigma F factor antagonist n=3 Tax=Clostridium acetobutylicum RepID=F0KAQ4_CLOAE
anti-sigma-factor antagonist; K06378 stage II sporulation protein AA (anti-sigma F factor antagonist) Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
anti-sigma-factor antagonist
Anti-sigma factor antagonist SpoIIaa (db=superfamily db_id=SSF52091 from=23 to=123 evalue=1.0e-13 interpro_id=IPR002645 interpro_description=Sulphate transporter/antisigma-factor antagonist STAS)
gwf2_scaffold_2066_7
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

4226..4774
DNA (549bp) protein (183aa)
methylglyoxal synthase; K00859 dephospho-CoA kinase [EC:2.7.1.24] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
Methylglyoxal synthase n=1 Tax=Halanaerobium sp. (strain sapolanicus) RepID=E4RIU8_HALSL
methylglyoxal synthase
TIGR00152: dephospho-CoA kinase (db=HMMTigr db_id=TIGR00152 from=3 to=173 evalue=1.8e-22 interpro_id=IPR001977 interpro_description=Dephospho-CoA kinase GO=Molecular Function: dephospho-CoA kinase activity (GO:0004140), Molecular Function: ATP binding (GO:0005524), Biological Process: coenzyme A biosynthetic process (GO:0015937))
gwf2_scaffold_2066_8
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(4745..5167)
DNA (423bp) protein (141aa)
Holliday junction resolvase YqgF; K07447 putative holliday junction resolvase [EC:3.1.-.-] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
Putative Holliday junction resolvase n=1 Tax=Cloacamonas acidaminovorans (strain Evry) RepID=B0VFM1_CLOAI
Holliday junction resolvase YqgF
no description (db=Gene3D db_id=G3DSA:3.30.420.140 from=2 to=137 evalue=2.8e-29 interpro_id=IPR006641 interpro_description=YqgF/RNase H-like domain GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139), Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788))
gwf2_scaffold_2066_9
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists


comp(5160..5609)
DNA (450bp) protein (150aa)
50S ribosomal protein L9 n=1 Tax=Cyclobacterium marinum (strain ATCC 25205 / DSM 745) RepID=G0IXU4_CYCMS
50S ribosomal protein L9; K02939 large subunit ribosomal protein L9 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
50S ribosomal protein L9
coiled-coil (db=Coil db_id=coil from=40 to=61 evalue=NA)
gwf2_scaffold_2066_10
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(5707..7377)
DNA (1671bp) protein (557aa)
Extracellular solute-binding protein family 5 n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EEG0_9CHLR
putative Extracellular solute-binding protein family 5 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
hypothetical protein
seg (db=Seg db_id=seg from=24 to=35)
gwf2_scaffold_2066_11
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(7458..7676)
DNA (219bp) protein (73aa)
Preprotein translocase SecG subunit Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=22)
seg (db=Seg db_id=seg from=26 to=37)
(db=HMMPfam db_id=PF03840 from=2 to=71 evalue=1.0e-12 interpro_id=IPR004692 interpro_description=Preprotein translocase SecG subunit GO=Biological Process: protein secretion (GO:0009306), Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity (GO:0015450), Cellular Component: integral to membrane (GO:0016021))
gwf2_scaffold_2066_12
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(7742..8116)
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QFY5_SPILD
hypothetical protein; K08972 putative membrane protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=23)
gwf2_scaffold_2066_13
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(8188..9315)
DNA (1128bp) protein (376aa)
recombination factor protein RarA n=1 Tax=Anaerophaga sp. HS1 RepID=UPI000255D6AC rbh
Uncharacterized protein {ECO:0000313|EMBL:KKP38365.1}; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_33_10.;"
AAA ATPase central domain-containing protein
seg (db=Seg db_id=seg from=194 to=207)
gwf2_scaffold_2066_14
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(9451..9921)
DNA (471bp) protein (157aa)
Bacterioferritin comigratory protein, peroxiredoxin Q/BCP {ECO:0000313|EMBL:KKP38366.1}; EC=1.11.1.15 {ECO:0000313|EMBL:KKP38366.1};; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Pere
Peroxiredoxin family protein n=1 Tax=Helicobacter pullorum MIT 98-5489 RepID=C5EYL2_9HELI
BCP; bacterioferritin comigratory protein
BACTERIOFERRITIN COMIGRATORY PROTEIN (db=HMMPanther db_id=PTHR10681:SF5 from=1 to=153 evalue=1.4e-64)
gwf2_scaffold_2066_15
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(9941..11503)
DNA (1563bp) protein (521aa)
seg Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
seg (db=Seg db_id=seg from=42 to=61)
gwf2_scaffold_2066_16
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(11653..12354)
DNA (702bp) protein (234aa)
seg Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
seg (db=Seg db_id=seg from=4 to=16)
gwf2_scaffold_2066_17
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

12799..13302
DNA (504bp) protein (168aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP38369.1}; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_33_10.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
seg (db=Seg db_id=seg from=20 to=38)
gwf2_scaffold_2066_18
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

13390..14592
DNA (1203bp) protein (401aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP38370.1}; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_33_10.;"
seg (db=Seg db_id=seg from=49 to=62)
gwf2_scaffold_2066_19
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(14598..14897)
DNA (300bp) protein (100aa)
id=5094693 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
gwf2_scaffold_2066_20
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

15251..15373
DNA (123bp) protein (41aa)
id=5094694 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
gwf2_scaffold_2066_21
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

15440..15718
DNA (279bp) protein (93aa)
seg Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
seg (db=Seg db_id=seg from=52 to=65)
gwf2_scaffold_2066_22
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(15731..17128)
DNA (1398bp) protein (466aa)
Type1 restriction modification enzyme, type I restriction enzyme, S subunit {ECO:0000313|EMBL:KKP38374.1}; EC=3.1.21.3 {ECO:0000313|EMBL:KKP38374.1};; TaxID=1619065 species="Bacteria; Peregrinibacteri
Type1 restriction modification enzyme n=1 Tax=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) RepID=C0QY30_BRAHW rbh
type1 restriction modification enzyme
coiled-coil (db=Coil db_id=coil from=425 to=463 evalue=NA)
gwf2_scaffold_2066_23
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(17248..18339)
DNA (1092bp) protein (364aa)
MloA n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZR76_9BACT rbh
hypothetical protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
hypothetical protein
(db=HMMPfam db_id=PF02661 from=116 to=208 evalue=1.1e-19 interpro_id=IPR003812 interpro_description=Filamentation induced by cAMP/death on curing-related)
gwf2_scaffold_2066_24
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(18364..20751)
DNA (2388bp) protein (796aa)
Type II restriction-modification enzyme n=1 Tax=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) RepID=C0QY29_BRAHW rbh
type II restriction-modification enzyme Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
type II restriction-modification enzyme
N6_MTASE (db=PatternScan db_id=PS00092 from=521 to=527 evalue=0.0 interpro_id=IPR002052 interpro_description=DNA methylase, N-6 adenine-specific, conserved site GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: methyltransferase activity (GO:0008168), Biological Process: methylation (GO:0032259))
gwf2_scaffold_2066_25
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(20986..22683)
DNA (1698bp) protein (566aa)
transmembrane_regions Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
seg (db=Seg db_id=seg from=16 to=28)
(db=HMMPfam db_id=PF11832 from=61 to=376 evalue=8.2e-18 interpro_id=IPR021787 interpro_description=Protein of unknown function DUF3352)
gwf2_scaffold_2066_26
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists


comp(22706..22879)
DNA (174bp) protein (58aa)
Ribosomal protein L33 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
rpmG_bact: ribosomal protein L33 (db=HMMTigr db_id=TIGR01023 from=1 to=54 evalue=0.00011 interpro_id=IPR001705 interpro_description=Ribosomal protein L33 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
seg (db=Seg db_id=seg from=36 to=55)
Zn-binding ribosomal proteins (db=superfamily db_id=SSF57829 from=2 to=52 evalue=5.7e-08 interpro_id=IPR011332 interpro_description=Ribosomal protein, zinc-binding domain GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
gwf2_scaffold_2066_27
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(22976..23251)
DNA (276bp) protein (92aa)
id=5094701 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
gwf2_scaffold_2066_28
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(23283..24272)
DNA (990bp) protein (330aa)
Caib/baif family protein n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q08VI8_STIAD
hypothetical protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
hypothetical protein
seg (db=Seg db_id=seg from=53 to=66)
gwf2_scaffold_2066_29
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

24395..25213
DNA (819bp) protein (273aa)
Transcriptional regulator, TrmB n=2 Tax=Marinomonas RepID=A6W3S6_MARMS
transcriptional regulator TrmB Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
Transcriptional regulator, TrmB
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=27 to=124 evalue=3.2e-08)
gwf2_scaffold_2066_30
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

25737..28115
DNA (2379bp) protein (793aa)
transmembrane_regions Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
transmembrane_regions (db=TMHMM db_id=tmhmm from=48 to=70)
seg (db=Seg db_id=seg from=295 to=304)
beta-lactamase/transpeptidase-like (db=superfamily db_id=SSF56601 from=589 to=712 evalue=4.2e-06 interpro_id=IPR012338 interpro_description=Beta-lactamase/transpeptidase-like)
Displaying items 1-30 of 33 in total

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