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gwf2_scaffold_2299

Alias: PER_GWF2_33_10_18

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwf2_scaffold_2299_1
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(2..1015)
DNA (1014bp) protein (338aa)
Type II secretion system F domain n=1 Tax=Halanaerobium sp. (strain sapolanicus) RepID=E4RLF9_HALSL
pilC; type 4 fimbrial assembly protein pilC Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
Type II secretion system F domain
transmembrane_regions (db=TMHMM db_id=tmhmm from=56 to=78)
gwf2_scaffold_2299_2
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(1081..1620)
DNA (540bp) protein (180aa)
coiled-coil Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
coiled-coil (db=Coil db_id=coil from=26 to=61 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
seg (db=Seg db_id=seg from=10 to=19)
gwf2_scaffold_2299_3
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(1671..2186)
DNA (516bp) protein (172aa)
transmembrane_regions Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
(db=HMMPfam db_id=PF05137 from=16 to=148 evalue=5.9e-09 interpro_id=IPR007813 interpro_description=Fimbrial assembly PilN)
gwf2_scaffold_2299_4
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

2259..3251
DNA (993bp) protein (331aa)
tRNA(ile)-lysidine synthetase; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
tRNA(Ile)-lysidine synthase n=1 Tax=Flavobacteriales bacterium ALC-1 RepID=A8UPK7_9FLAO
putative tRNA(Ile)-lysidine synthetase
coiled-coil (db=Coil db_id=coil from=231 to=252 evalue=NA)
gwf2_scaffold_2299_5
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

3279..5150
DNA (1872bp) protein (624aa)
ATP-dependent metalloprotease FtsH (EC:3.6.4.3); K03798 cell division protease FtsH [EC:3.4.24.-] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
ATP-dependent metalloprotease FtsH (EC:3.6.4.3)
ATP-dependent zinc metalloprotease FtsH n=2 Tax=uncultured candidate division JS1 bacterium RepID=G3BMI9_9BACT rbh
AAA (db=PatternScan db_id=PS00674 from=315 to=333 evalue=0.0 interpro_id=IPR003960 interpro_description=ATPase, AAA-type, conserved site GO=Molecular Function: ATP binding (GO:0005524))
gwf2_scaffold_2299_6
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

5281..5745
DNA (465bp) protein (155aa)
Heat shock protein Hsp20 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XRD8_9BACT
heat shock protein hsp20; K13993 HSP20 family protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
heat shock protein hsp20
seg (db=Seg db_id=seg from=24 to=34)
gwf2_scaffold_2299_7
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

5780..6706
DNA (927bp) protein (309aa)
galU; glucose-1-phosphate uridylyltransferase (EC:2.7.7.9) Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
galU; glucose-1-phosphate uridylyltransferase (EC:2.7.7.9)
UTP-glucose-1-phosphate uridylyltransferase n=2 Tax=Dictyoglomus RepID=B5YA64_DICT6 rbh
galU: UTP-glucose-1-phosphate uridylyltransf (db=HMMTigr db_id=TIGR01099 from=25 to=285 evalue=1.0e-129 interpro_id=IPR005771 interpro_description=UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO=Molecular Function: UTP:glucose-1-phosphate uridylyltransferase activity (GO:0003983), Biological Process: UDP-glucose metabolic process (GO:0006011))
gwf2_scaffold_2299_8
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(6703..6873)
DNA (171bp) protein (57aa)
id=5094715 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
gwf2_scaffold_2299_9
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

7020..9665
DNA (2646bp) protein (882aa)
ppdK; pyruvate phosphate dikinase (EC:2.7.9.1); K01006 pyruvate,orthophosphate dikinase [EC:2.7.9.1] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
ppdK; pyruvate phosphate dikinase (EC:2.7.9.1)
Pyruvate phosphate dikinase n=1 Tax=Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC 101012 / SSM1) RepID=D3PAX3_DEFDS rbh
PEP_ENZYMES_PHOS_SITE (db=PatternScan db_id=PS00370 from=449 to=460 evalue=0.0 interpro_id=IPR018274 interpro_description=PEP-utilising enzyme, active site GO=Biological Process: phosphorylation (GO:0016310), Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772))
gwf2_scaffold_2299_10
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(9653..10963)
DNA (1311bp) protein (437aa)
Conserved uncharacterized protein n=1 Tax=Desulfobacula toluolica (strain DSM 7467 / Tol2) RepID=K0NL71_DESTT
hypothetical protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
hypothetical protein
seg (db=Seg db_id=seg from=67 to=79)
gwf2_scaffold_2299_11
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(11025..11906)
DNA (882bp) protein (294aa)
ATP-NAD/AcoX kinase, NAD+ kinase {ECO:0000313|EMBL:KKP38318.1}; EC=2.7.1.23 {ECO:0000313|EMBL:KKP38318.1};; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW
Probable inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Nitrospina gracilis 3/211 RepID=M1Z318_9BACT
ATP-NAD/AcoX kinase
seg (db=Seg db_id=seg from=261 to=271)
gwf2_scaffold_2299_12
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

11973..13142
DNA (1170bp) protein (390aa)
Glycosyltransferase n=1 Tax=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) RepID=A5D3B7_PELTS
RfaG; glycosyltransferase Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
Glycosyl transferase, group 1
transmembrane_regions (db=TMHMM db_id=tmhmm from=75 to=97)
gwf2_scaffold_2299_13
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

13232..14320
DNA (1089bp) protein (363aa)
Peptidase M23 family protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0HZP0_CALAS
peptidase M23 family protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
peptidase M23 family protein
no description (db=HMMSmart db_id=SM00257 from=105 to=150 evalue=0.0058 interpro_id=IPR002482 interpro_description=Peptidoglycan-binding Lysin subgroup GO=Biological Process: cell wall macromolecule catabolic process (GO:0016998))
gwf2_scaffold_2299_14
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

14675..16234
DNA (1560bp) protein (520aa)
IMP cyclohydrolase;phosphoribosylaminoimidazolecarboxamide formyltransferase (EC:2.1.2.3 3.5.4.10); K00602 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.
IMP cyclohydrolase;phosphoribosylaminoimidazolecarboxamide formyltransferase (EC:2.1.2.3 3.5.4.10)
Bifunctional purine biosynthesis protein PurH n=1 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=B8D0L8_HALOH rbh
seg (db=Seg db_id=seg from=476 to=487)
gwf2_scaffold_2299_15
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(16316..16516)
DNA (201bp) protein (67aa)
PROKAR_LIPOPROTEIN Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
seg (db=Seg db_id=seg from=34 to=64)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=22 evalue=6.0)
gwf2_scaffold_2299_16
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(16582..17160)
DNA (579bp) protein (193aa)
Superoxide dismutase, superoxide dismutase, Fe-Mn family {ECO:0000313|EMBL:KKP38323.1}; EC=1.15.1.1 {ECO:0000313|EMBL:KKP38323.1};; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregr
Superoxide dismutase (EC:1.15.1.1)
Superoxide dismutase, Fe-Mn family n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SQ27_9BACT
Fe,Mn superoxide dismutase (SOD), C-terminal domain (db=superfamily db_id=SSF54719 from=82 to=192 evalue=2.0e-27 interpro_id=IPR019832 interpro_description=Manganese/iron superoxide dismutase, C-terminal GO=Molecular Function: superoxide dismutase activity (GO:0004784), Biological Process: superoxide metabolic process (GO:0006801), Molecular Function: metal ion binding (GO:0046872), Biological Process: oxidation-reduction process (GO:0055114))
gwf2_scaffold_2299_17
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(17312..17875)
DNA (564bp) protein (188aa)
Peroxiredoxin, peroxiredoxin (Alkyl hydroperoxide reductase subunit C) {ECO:0000313|EMBL:KKP38324.1}; EC=1.11.1.15 {ECO:0000313|EMBL:KKP38324.1};; TaxID=1619065 species="Bacteria; Peregrinibacteria.;"
prx-1; peroxiredoxin (EC:1.11.1.15)
Peroxiredoxin n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I917_METCZ
ALKYL HYDROPEROXIDE REDUCTASE, SUBUNIT C (db=HMMPanther db_id=PTHR10681:SF7 from=1 to=180 evalue=1.6e-103 interpro_id=IPR017559 interpro_description=Alkyl hydroperoxide reductase subunit C GO=Molecular Function: peroxiredoxin activity (GO:0051920), Biological Process: oxidation-reduction process (GO:0055114))
gwf2_scaffold_2299_18
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(17969..19603)
DNA (1635bp) protein (545aa)
Cellulosome-anchoring protein n=1 Tax=Peptoniphilus indolicus ATCC 29427 RepID=G4D164_9FIRM
hypothetical protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
gwf2_scaffold_2299_19
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(19863..20687)
DNA (825bp) protein (275aa)
pyrroline-5-carboxylate reductase (EC:1.5.1.2); K00286 pyrroline-5-carboxylate reductase [EC:1.5.1.2] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
pyrroline-5-carboxylate reductase (EC:1.5.1.2)
Pyrroline-5-carboxylate reductase n=1 Tax=Marivirga tractuosa (strain ATCC 23168 / DSM 4126 / NBRC 15989 / NCIMB 1408 / VKM B-1430 / H-43) RepID=E4TNC3_MARTH
no description (db=Gene3D db_id=G3DSA:3.40.50.720 from=2 to=70 evalue=0.00071 interpro_id=IPR016040 interpro_description=NAD(P)-binding domain GO=Molecular Function: nucleotide binding (GO:0000166))
gwf2_scaffold_2299_20
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(20742..21821)
DNA (1080bp) protein (360aa)
gamma-glutamyl kinase; K00931 glutamate 5-kinase [EC:2.7.2.11] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
Glutamate 5-kinase n=1 Tax=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) RepID=B3QRV3_CHLT3 rbh
gamma-glutamyl kinase
no description (db=HMMSmart db_id=SM00359 from=276 to=350 evalue=1.4e-05 interpro_id=IPR002478 interpro_description=Pseudouridine synthase/archaeosine transglycosylase GO=Molecular Function: RNA binding (GO:0003723))
gwf2_scaffold_2299_21
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

21963..22820
DNA (858bp) protein (286aa)
seg Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
seg (db=Seg db_id=seg from=156 to=167)
gwf2_scaffold_2299_22
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

22869..23813
DNA (945bp) protein (315aa)
glutamate formiminotransferase; K00603 glutamate formiminotransferase [EC:2.1.2.5] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
glutamate formiminotransferase (EC:4.3.1.4)
Glutamate formiminotransferase n=7 Tax=Thermoanaerobacter RepID=B0KCB8_THEP3
seg (db=Seg db_id=seg from=189 to=201)
gwf2_scaffold_2299_23
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

23977..25290
DNA (1314bp) protein (438aa)
Putative membrane protein n=1 Tax=Methanobacterium sp. Maddingley MBC34 RepID=K6T1U8_9EURY
hypothetical protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
MgtC family protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
Displaying 23 items

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