ggKbase home page

gwf2_scaffold_2531

Alias: PER_GWF2_33_10_21

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwf2_scaffold_2531_1
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

1..1602
DNA (1602bp) protein (534aa)
thrS; threonyl-tRNA synthetase; K01868 threonyl-tRNA synthetase [EC:6.1.1.3] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
Threonine--tRNA ligase n=1 Tax=Niabella soli DSM 19437 RepID=H1NKU4_9SPHI rbh
threonyl-tRNA synthetase
coiled-coil (db=Coil db_id=coil from=115 to=136 evalue=NA)
gwf2_scaffold_2531_2
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(1629..7052)
DNA (5424bp) protein (1808aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP38121.1}; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_33_10.;"
coiled-coil (db=Coil db_id=coil from=333 to=354 evalue=NA)
seg (db=Seg db_id=seg from=63 to=76)
gwf2_scaffold_2531_3
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

7366..7989
DNA (624bp) protein (208aa)
Peptidase M50 n=1 Tax=Thermovibrio ammonificans (strain DSM 15698 / JCM 12110 / HB-1) RepID=E8T376_THEA1
Peptidase M50 {ECO:0000313|EMBL:KKP38122.1}; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_33_10.;"
peptidase
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
gwf2_scaffold_2531_4
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

7992..8495
DNA (504bp) protein (168aa)
PRC-barrel-like Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
seg (db=Seg db_id=seg from=120 to=129)
PRC-barrel domain (db=superfamily db_id=SSF50346 from=80 to=155 evalue=1.2e-12 interpro_id=IPR011033 interpro_description=PRC-barrel-like)
(db=HMMPfam db_id=PF05239 from=3 to=63 evalue=3.5e-07 interpro_id=IPR007903 interpro_description=PRC-barrel)
gwf2_scaffold_2531_5
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(8570..8974)
DNA (405bp) protein (135aa)
transmembrane_regions Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
gwf2_scaffold_2531_6
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

9135..9464
DNA (330bp) protein (110aa)
transmembrane_regions Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
seg (db=Seg db_id=seg from=63 to=79)
gwf2_scaffold_2531_7
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

9461..10096
DNA (636bp) protein (212aa)
tRNA (guanine-N(7)-)-methyltransferase n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KL71_SOLCM
tRNA (guanine-N(7)-)-methyltransferase Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
tRNA (guanine-N(7)-)-methyltransferase
(db=HMMPfam db_id=PF02390 from=30 to=209 evalue=1.3e-36 interpro_id=IPR003358 interpro_description=tRNA (guanine-N-7) methyltransferase GO=Biological Process: tRNA modification (GO:0006400), Molecular Function: tRNA (guanine-N7-)-methyltransferase activity (GO:0008176))
gwf2_scaffold_2531_8
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(10100..10351)
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1LPU7_9CLOT
hypothetical protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
gwf2_scaffold_2531_9
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

10508..11302
DNA (795bp) protein (265aa)
RNA polymerase sigma factor n=1 Tax=Desulfovibrio desulfuricans ND132 RepID=F0JH93_DESDE
putative RNA polymerase sigma 70 family subunit; K03089 RNA polymerase sigma-32 factor Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
RNA polymerase sigma 70 family subunit
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=185 to=251 evalue=3.8e-07 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
gwf2_scaffold_2531_10
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

11396..12919
DNA (1524bp) protein (508aa)
Mg chelatase, subunit ChlI n=1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9AWT2_HERA2 rbh
Mg chelatase subunit ChlI; K07391 magnesium chelatase family protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
Mg chelatase subunit ChlI
ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX (db=HMMPanther db_id=PTHR11262:SF4 from=216 to=238 evalue=0.00098 interpro_id=IPR004487 interpro_description=Clp protease, ATP-binding subunit ClpX GO=Molecular Function: ATP binding (GO:0005524), Biological Process: protein folding (GO:0006457), Molecular Function: unfolded protein binding (GO:0051082))
gwf2_scaffold_2531_11
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

12983..13369
DNA (387bp) protein (129aa)
transmembrane_regions Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
gwf2_scaffold_2531_12
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

13487..14974
DNA (1488bp) protein (496aa)
6-phosphogluconate dehydrogenase, 6-phosphogluconate dehydrogenase {ECO:0000313|EMBL:KKP38131.1}; EC=1.1.1.44 {ECO:0000313|EMBL:KKP38131.1};; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" sour
6-phosphogluconate dehydrogenase (EC:1.1.1.44)
6-phosphogluconate dehydrogenase, decarboxylating n=19 Tax=Bacillaceae RepID=C5D431_GEOSW rbh
6PGD (db=PatternScan db_id=PS00461 from=262 to=274 evalue=0.0 interpro_id=IPR006184 interpro_description=6-phosphogluconate-binding site GO=Molecular Function: phosphogluconate dehydrogenase (decarboxylating) activity (GO:0004616), Biological Process: pentose-phosphate shunt (GO:0006098), Biological Process: oxidation-reduction process (GO:0055114))
gwf2_scaffold_2531_13
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(15048..15587)
DNA (540bp) protein (180aa)
seg Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
gwf2_scaffold_2531_14
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(15616..16755)
DNA (1140bp) protein (380aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP38133.1}; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_33_10.;"
seg (db=Seg db_id=seg from=116 to=129)
gwf2_scaffold_2531_15
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(16782..17387)
DNA (606bp) protein (202aa)
Universal bacterial protein YeaZ n=1 Tax=Aerococcus urinae (strain ACS-120-V-Col10a) RepID=F2I7W0_AERUA
yeaZ; hypothetical protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
yeaZ; hypothetical protein
(db=HMMPfam db_id=PF00814 from=43 to=132 evalue=2.2e-10 interpro_id=IPR000905 interpro_description=Peptidase M22, glycoprotease GO=Molecular Function: metalloendopeptidase activity (GO:0004222), Biological Process: proteolysis (GO:0006508))
gwf2_scaffold_2531_16
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(17396..17704)
DNA (309bp) protein (103aa)
coiled-coil Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
coiled-coil (db=Coil db_id=coil from=23 to=65 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=20 evalue=6.0)
gwf2_scaffold_2531_17
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(17709..18029)
DNA (321bp) protein (107aa)
id=5094818 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
gwf2_scaffold_2531_18
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

18250..19125
DNA (876bp) protein (292aa)
pyridoxine biosynthesis protein (EC:4.-.-.-)
Pyridoxal biosynthesis lyase PdxS n=1 Tax=Marinitoga piezophila (strain DSM 14283 / JCM 11233 / KA3) RepID=H2J822_MARPK rbh
pyridoxine biosynthesis glutamine amidotransferase, synthase subunit Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
PDXS_SNZ_1 (db=PatternScan db_id=PS01235 from=204 to=222 evalue=0.0 interpro_id=IPR001852 interpro_description=Vitamin B6 biosynthesis protein GO=Biological Process: pyridoxal phosphate biosynthetic process (GO:0042823))
gwf2_scaffold_2531_19
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

19148..19489
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Streptomyces ipomoeae 91-03 RepID=L1KSZ3_9ACTO
Uncharacterized protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
AF0104/ALDC/Ptd012-like (db=superfamily db_id=SSF117856 from=1 to=111 evalue=1.4e-14)
(db=HMMPfam db_id=PF03479 from=5 to=112 evalue=3.1e-13 interpro_id=IPR005175 interpro_description=Domain of unknown function DUF296)
gwf2_scaffold_2531_20
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(19517..20575)
DNA (1059bp) protein (353aa)
no description Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
seg (db=Seg db_id=seg from=44 to=61)
Protein kinase-like (PK-like) (db=superfamily db_id=SSF56112 from=155 to=336 evalue=1.2e-12 interpro_id=IPR011009 interpro_description=Protein kinase-like domain GO=Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772))
(db=HMMPfam db_id=PF00069 from=152 to=335 evalue=1.6e-08 interpro_id=IPR000719 interpro_description=Protein kinase, catalytic domain GO=Molecular Function: protein kinase activity (GO:0004672), Molecular Function: ATP binding (GO:0005524), Biological Process: protein phosphorylation (GO:0006468))
gwf2_scaffold_2531_21
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(20615..23539)
DNA (2925bp) protein (975aa)
coiled-coil Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
coiled-coil (db=Coil db_id=coil from=8 to=29 evalue=NA)
seg (db=Seg db_id=seg from=164 to=178)
gwf2_scaffold_2531_22
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

23878..24432
DNA (555bp) protein (185aa)
Prepilin-type cleavage/methylation, N-terminal Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
seg (db=Seg db_id=seg from=14 to=25)
no description (db=Gene3D db_id=G3DSA:3.30.700.10 from=10 to=74 evalue=1.0e-05)
gwf2_scaffold_2531_23
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

24450..25088
DNA (639bp) protein (213aa)
Prepilin-type cleavage/methylation, N-terminal Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
IV_pilin_GFxxxE: prepilin-type N-term (db=HMMTigr db_id=TIGR02532 from=7 to=30 evalue=0.009 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
seg (db=Seg db_id=seg from=15 to=36)
gwf2_scaffold_2531_24
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

25277..26389
DNA (1113bp) protein (371aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP38143.1}; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_33_10.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
seg (db=Seg db_id=seg from=7 to=27)
gwf2_scaffold_2531_25
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

26456..28606
DNA (2151bp) protein (717aa)
Hemolysin-type calcium-binding region n=1 Tax=Oscillatoria nigro-viridis PCC 7112 RepID=K9VI75_9CYAN
Hemolysin-type calcium-binding region Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
Hemolysin-type calcium-binding region
seg (db=Seg db_id=seg from=338 to=354)
gwf2_scaffold_2531_26
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(28640..29929)
DNA (1290bp) protein (430aa)
seg Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
seg (db=Seg db_id=seg from=8 to=22)
gwf2_scaffold_2531_27
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(29934..31838)
DNA (1905bp) protein (635aa)
M23B subfamily peptidase n=1 Tax=Bibersteinia trehalosi USDA-ARS-USMARC-192 RepID=M4R913_PASTR
NlpD protein {ECO:0000313|EMBL:KKP38146.1}; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_33_10.;"
M23B subfamily peptidase
coiled-coil (db=Coil db_id=coil from=178 to=213 evalue=NA)
gwf2_scaffold_2531_28
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(31876..32247)
DNA (372bp) protein (124aa)
S23 ribosomal protein n=1 Tax=Flavobacterium sp. CF136 RepID=J2K186_9FLAO
s23 ribosomal protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
s23 ribosomal protein
(db=HMMPfam db_id=PF05635 from=6 to=112 evalue=2.7e-41 interpro_id=IPR008815 interpro_description=23S rRNA-intervening sequence protein)
gwf2_scaffold_2531_29
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

32390..34504
DNA (2115bp) protein (705aa)
Adenylate cyclase, adenylate cyclase {ECO:0000313|EMBL:KKP38148.1}; EC=4.6.1.1 {ECO:0000313|EMBL:KKP38148.1};; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium
Adenylate/guanylate cyclase with Chase sensor n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XUF7_9BACT rbh
adenylate cyclase
transmembrane_regions (db=TMHMM db_id=tmhmm from=34 to=56)
gwf2_scaffold_2531_30
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

34542..35468
DNA (927bp) protein (309aa)
Auxin efflux carrier family protein n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q488J8_COLP3
auxin efflux carrier family protein; K07088 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
auxin efflux carrier family protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=25)
Displaying items 1-30 of 47 in total

View Taxonomy