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gwf2_scaffold_2832

Alias: PER_GWF2_33_10_25

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwf2_scaffold_2832_1
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(2..178)
DNA (177bp) protein (59aa)
hypothetical protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
gwf2_scaffold_2832_2
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

322..1344
DNA (1023bp) protein (341aa)
yloN; ribosomal RNA large subunit methyltransferase N; K06941 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
Probable dual-specificity RNA methyltransferase RlmN n=3 Tax=Bacillaceae RepID=RLMN_LYSSC
23S rRNA methyltransferase
Radical SAM enzymes (db=superfamily db_id=SSF102114 from=97 to=262 evalue=1.4e-10)
gwf2_scaffold_2832_3
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(1331..2362)
DNA (1032bp) protein (344aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP37925.1}; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_33_10.;"
Radical SAM enzymes (db=superfamily db_id=SSF102114 from=42 to=157 evalue=4.1e-06)
gwf2_scaffold_2832_4
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(2497..2871)
DNA (375bp) protein (125aa)
RutC family protein PH0854 n=2 Tax=Rhizoctonia solani AG-1 IB RepID=M5CF75_9HOMO
hypothetical protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
slr0709; hypothetical protein
UPF0076 (db=PatternScan db_id=PS01094 from=100 to=118 evalue=0.0 interpro_id=IPR019897 interpro_description=YjgF-like protein, conserved site)
gwf2_scaffold_2832_5
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

3075..3617
DNA (543bp) protein (181aa)
id=5094900 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
gwf2_scaffold_2832_6
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(3668..4744)
DNA (1077bp) protein (359aa)
3-isopropylmalate dehydrogenase (EC:1.1.1.85); K00052 3-isopropylmalate dehydrogenase [EC:1.1.1.85] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
leuB; 3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase n=12 Tax=Francisella RepID=A0Q405_FRATN rbh
IDH_IMDH (db=PatternScan db_id=PS00470 from=245 to=264 evalue=0.0 interpro_id=IPR019818 interpro_description=Isocitrate/isopropylmalate dehydrogenase, conserved site GO=Molecular Function: magnesium ion binding (GO:0000287), Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616), Molecular Function: NAD binding (GO:0051287), Biological Process: oxidation-reduction process (GO:0055114))
gwf2_scaffold_2832_7
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

5150..7243
DNA (2094bp) protein (698aa)
Uncharacterized protein n=1 Tax=Bacillus azotoformans LMG 9581 RepID=K6D7W5_BACAZ
slpA; S-layer protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
slpA; S-layer protein
coiled-coil (db=Coil db_id=coil from=341 to=362 evalue=NA)
gwf2_scaffold_2832_8
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

7333..10800
DNA (3468bp) protein (1156aa)
ColH protein n=1 Tax=Clostridium histolyticum RepID=Q46085_CLOHI
hypothetical protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
gwf2_scaffold_2832_9
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(10920..12119)
DNA (1200bp) protein (400aa)
Putative LytR family transcriptional protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I6S1_CALAS
putative LytR family transcriptional protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
putative LytR family transcriptional protein
coiled-coil (db=Coil db_id=coil from=86 to=128 evalue=NA)
gwf2_scaffold_2832_10
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(12146..14731)
DNA (2586bp) protein (862aa)
hypothetical protein cdiviTM7_01505 n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B22CB rbh
Uncharacterized protein {ECO:0000313|EMBL:KKP37932.1}; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_33_10.;"
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
gwf2_scaffold_2832_11
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

14961..15806
DNA (846bp) protein (282aa)
transmembrane_regions Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
transmembrane_regions (db=TMHMM db_id=tmhmm from=40 to=62)
seg (db=Seg db_id=seg from=40 to=52)
(db=HMMPfam db_id=PF08478 from=66 to=136 evalue=2.6e-09 interpro_id=IPR013685 interpro_description=Polypeptide-transport-associated, FtsQ-type)
gwf2_scaffold_2832_12
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists


15872..16468
DNA (597bp) protein (199aa)
50S ribosomal protein L7/L12 n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B21A2
hypothetical protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
50S ribosomal protein L7/L12
coiled-coil (db=Coil db_id=coil from=7 to=28 evalue=NA)
gwf2_scaffold_2832_13
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

16478..17173
DNA (696bp) protein (232aa)
transmembrane_regions Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
transmembrane_regions (db=TMHMM db_id=tmhmm from=61 to=83)
seg (db=Seg db_id=seg from=66 to=82)
(db=HMMPfam db_id=PF08334 from=106 to=179 evalue=3.6e-05 interpro_id=IPR013545 interpro_description=Type II secretion system protein G)
gwf2_scaffold_2832_14
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

17176..18138
DNA (963bp) protein (321aa)
dusB; tRNA-dihydrouridine synthase B (EC:1.-.-.-) Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
dusB; tRNA-dihydrouridine synthase B (EC:1.-.-.-)
dihydrouridine synthase TIM-barrel protein nifR3 n=1 Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI0002627AF0
UPF0034 (db=PatternScan db_id=PS01136 from=97 to=115 evalue=0.0 interpro_id=IPR018517 interpro_description=tRNA-dihydrouridine synthase, conserved site GO=Biological Process: tRNA processing (GO:0008033), Molecular Function: tRNA dihydrouridine synthase activity (GO:0017150), Molecular Function: flavin adenine dinucleotide binding (GO:0050660), Biological Process: oxidation-reduction process (GO:0055114))
gwf2_scaffold_2832_15
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(18734..18838)
DNA (105bp) protein (35aa)
id=5094910 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
gwf2_scaffold_2832_16
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

19101..20027
DNA (927bp) protein (309aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JEL1_9FIRM
hypothetical protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
serine/threonine protein kinase
PROTEIN_KINASE_ST (db=PatternScan db_id=PS00108 from=149 to=161 evalue=0.0 interpro_id=IPR008271 interpro_description=Serine/threonine-protein kinase, active site GO=Molecular Function: protein serine/threonine kinase activity (GO:0004674), Biological Process: protein phosphorylation (GO:0006468))
gwf2_scaffold_2832_17
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(20420..21034)
DNA (615bp) protein (205aa)
coiled-coil Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
coiled-coil (db=Coil db_id=coil from=55 to=76 evalue=NA)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=21 to=193 evalue=6.6e-07)
gwf2_scaffold_2832_18
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(21081..22358)
DNA (1278bp) protein (426aa)
ATP-dependent Clp protease ATP-binding subunit ClpX (EC:3.4.21.92)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Clostridium hathewayi WAL-18680 RepID=G5IDC3_9CLOT
ATP-dependent Clp protease ATP-binding subunit ClpX; K03544 ATP-dependent Clp protease ATP-binding subunit ClpX Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
coiled-coil (db=Coil db_id=coil from=290 to=311 evalue=NA)
Displaying 18 items

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