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gwf2_scaffold_6142

Alias: PER_GWF2_33_10_36

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwf2_scaffold_6142_1
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

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comp(265..1254)
-----------------
DNA (990bp)
protein (330aa)
Peptidase M23 family protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I6Y5_CALAS
peptidase M23 family protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
peptidase M23 family protein
Duplicated hybrid motif (db=superfamily db_id=SSF51261 from=2 to=148 evalue=3.6e-30 interpro_id=IPR011055 interpro_description=Duplicated hybrid motif)
gwf2_scaffold_6142_2
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

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comp(1629..2180)
-----------------
DNA (552bp)
protein (184aa)
id=5095142 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
gwf2_scaffold_6142_3
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

2347..3624
-----------------
DNA (1278bp)
protein (426aa)
eno; Enolase (EC:4.2.1.11); K01689 enolase [EC:4.2.1.11] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
eno; enolase (EC:4.2.1.11)
Enolase n=1 Tax=Corynebacterium resistens (strain DSM 45100 / JCM 12819 / GTC 2026) RepID=F8E0I0_CORRG rbh
ENOLASE (db=PatternScan db_id=PS00164 from=335 to=348 evalue=0.0 interpro_id=IPR020809 interpro_description=Enolase, conserved site GO=Cellular Component: phosphopyruvate hydratase complex (GO:0000015), Molecular Function: magnesium ion binding (GO:0000287), Molecular Function: phosphopyruvate hydratase activity (GO:0004634), Biological Process: glycolysis (GO:0006096))
gwf2_scaffold_6142_4
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

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comp(3625..4992)
-----------------
DNA (1368bp)
protein (456aa)
id=5095144 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
gwf2_scaffold_6142_5
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

5254..5496
-----------------
DNA (243bp)
protein (81aa)
seg Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
seg (db=Seg db_id=seg from=60 to=74)
gwf2_scaffold_6142_6
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(5493..6086)
-----------------
DNA (594bp)
protein (198aa)
dcd; deoxycytidine triphosphate deaminase (EC:3.5.4.13); K01494 dCTP deaminase [EC:3.5.4.13] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
dcd; deoxycytidine triphosphate deaminase (EC:3.5.4.13)
Deoxycytidine triphosphate deaminase n=2 Tax=Dictyoglomus RepID=DCD_DICT6
(db=HMMPfam db_id=PF00692 from=78 to=162 evalue=1.0e-10 interpro_id=IPR008180 interpro_description=DeoxyUTP pyrophosphatase GO=Molecular Function: hydrolase activity (GO:0016787), Biological Process: dUTP metabolic process (GO:0046080))
gwf2_scaffold_6142_7
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

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6308..6577
-----------------
DNA (270bp)
protein (90aa)
S-layer domain-containing protein n=3 Tax=Caldicellulosiruptor RepID=E4S4C0_CALKI
S-layer protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
S-layer protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
gwf2_scaffold_6142_8
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

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6564..6737
-----------------
DNA (174bp)
protein (58aa)
id=5095148 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
gwf2_scaffold_6142_9
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(6813..7658)
-----------------
DNA (846bp)
protein (282aa)
alpha/beta-Hydrolases Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
alpha/beta-Hydrolases (db=superfamily db_id=SSF53474 from=43 to=194 evalue=1.1e-10)
gwf2_scaffold_6142_10
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

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comp(7711..8823)
-----------------
DNA (1113bp)
protein (371aa)
seg Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
seg (db=Seg db_id=seg from=67 to=78)
gwf2_scaffold_6142_11
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(8885..10237)
-----------------
DNA (1353bp)
protein (451aa)
purB; adenylosuccinate lyase (EC:4.3.2.2); K01756 adenylosuccinate lyase [EC:4.3.2.2] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
purB; adenylosuccinate lyase (EC:4.3.2.2)
Adenylosuccinate lyase n=5 Tax=Proteus RepID=B4EVG0_PROMH rbh
FUMARATE_LYASES (db=PatternScan db_id=PS00163 from=290 to=299 evalue=0.0 interpro_id=IPR020557 interpro_description=Fumarate lyase, conserved site GO=Molecular Function: catalytic activity (GO:0003824))
gwf2_scaffold_6142_12
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

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10418..11104
-----------------
DNA (687bp)
protein (229aa)
L-serine dehydratase, iron-sulfur-dependent, beta subunit 2, L-serine dehydratase {ECO:0000313|EMBL:KKP36883.1}; EC=4.3.1.17 {ECO:0000313|EMBL:KKP36883.1};; TaxID=1619065 species="Bacteria; Peregrinib
L-serine dehydratase, beta subunit n=2 Tax=Staphylococcus pseudintermedius RepID=E8SG24_STAPH
sdaAB1; putative L-serine dehydratase, beta chain
(db=HMMPfam db_id=PF03315 from=6 to=136 evalue=1.8e-25 interpro_id=IPR005131 interpro_description=Serine dehydratase beta chain GO=Molecular Function: L-serine ammonia-lyase activity (GO:0003941), Biological Process: gluconeogenesis (GO:0006094), Molecular Function: 4 iron, 4 sulfur cluster binding (GO:0051539))
gwf2_scaffold_6142_13
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

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11218..12120
-----------------
DNA (903bp)
protein (301aa)
sdaAA; putative L-serine dehydratase, alpha chain (EC:4.3.1.17)
L-serine dehydratase, iron-sulfur-dependent, alpha subunit n=2 Tax=Bacillus methanolicus RepID=I3DZ73_BACMT
L-serine deaminase Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
coiled-coil (db=Coil db_id=coil from=8 to=29 evalue=NA)
gwf2_scaffold_6142_14
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

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12399..12719
-----------------
DNA (321bp)
protein (107aa)
Thioredoxin n=2 Tax=Desulfovibrio RepID=C6BTU9_DESAD
thioredoxin; K03671 thioredoxin 1 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
thioredoxin
THIOREDOXIN_1 (db=PatternScan db_id=PS00194 from=23 to=41 evalue=0.0 interpro_id=IPR017937 interpro_description=Thioredoxin, conserved site GO=Biological Process: cell redox homeostasis (GO:0045454))
gwf2_scaffold_6142_15
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

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12745..13656
-----------------
DNA (912bp)
protein (304aa)
Uncharacterized protein n=2 Tax=Parachlamydia acanthamoebae RepID=F8KY44_PARAV
hypothetical protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
hypothetical protein
seg (db=Seg db_id=seg from=21 to=38)
gwf2_scaffold_6142_16
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(13583..14080)
-----------------
DNA (498bp)
protein (166aa)
Ribonuclease H (EC:3.1.26.4) Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
Ribonuclease H (EC:3.1.26.4)
Ribonuclease H n=1 Tax=Cyanothece sp. (strain PCC 7822) RepID=E0UNI2_CYAP2
(db=HMMPfam db_id=PF00075 from=5 to=139 evalue=1.5e-29 interpro_id=IPR002156 interpro_description=Ribonuclease H domain GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: ribonuclease H activity (GO:0004523))
gwf2_scaffold_6142_17
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(14192..16816)
-----------------
DNA (2625bp)
protein (875aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP36888.1}; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_33_10.;"
seg (db=Seg db_id=seg from=525 to=540)
gwf2_scaffold_6142_18
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

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16990..17964
-----------------
DNA (975bp)
protein (325aa)
Twitching motility protein PilT n=1 Tax=Cloacamonas acidaminovorans (strain Evry) RepID=B0VJ51_CLOAI
Twitching motility protein, twitching motility protein PilT {ECO:0000313|EMBL:KKP36889.1}; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_33_10.;
twitching motility protein
(db=HMMPfam db_id=PF00437 from=13 to=243 evalue=1.9e-28 interpro_id=IPR001482 interpro_description=Type II secretion system protein E GO=Molecular Function: ATP binding (GO:0005524), Cellular Component: intracellular (GO:0005622), Biological Process: transport (GO:0006810))
gwf2_scaffold_6142_19
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(17977..18636)
-----------------
DNA (660bp)
protein (220aa)
thiamine-phosphate pyrophosphorylase; K00788 thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
Thiamine-phosphate synthase n=1 Tax=planctomycete KSU-1 RepID=I3IM30_9PLAN
thiamine-phosphate pyrophosphorylase
seg (db=Seg db_id=seg from=158 to=167)
gwf2_scaffold_6142_20
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(18681..19496)
-----------------
DNA (816bp)
protein (272aa)
Thiamine thiazole synthase, chloroplastic n=8 Tax=Oryza RepID=I1QE35_ORYGL rbh
Os07g0529600; Similar to Thiazole biosynthetic enzyme 1-1, chloroplast precursor. Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
ribulose-1,5-biphosphate synthetase
seg (db=Seg db_id=seg from=37 to=49)
gwf2_scaffold_6142_21
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

19568..20176
-----------------
DNA (609bp)
protein (203aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP36892.1}; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_33_10.;"
seg (db=Seg db_id=seg from=37 to=52)
transmembrane_regions (db=TMHMM db_id=tmhmm from=59 to=81)
gwf2_scaffold_6142_22
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(20195..21466)
-----------------
DNA (1272bp)
protein (424aa)
Glycine hydroxymethyltransferase, glycine hydroxymethyltransferase {ECO:0000313|EMBL:KKP36893.1}; EC=2.1.2.1 {ECO:0000313|EMBL:KKP36893.1};; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" sourc
glycine hydroxymethyltransferase (EC:2.1.2.1)
Glycine hydroxymethyltransferase n=1 Tax=sediment metagenome RepID=D9PFE3_9ZZZZ rbh
SHMT (db=PatternScan db_id=PS00096 from=228 to=244 evalue=0.0 interpro_id=IPR019798 interpro_description=Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO=Molecular Function: glycine hydroxymethyltransferase activity (GO:0004372), Biological Process: glycine metabolic process (GO:0006544), Biological Process: L-serine metabolic process (GO:0006563), Molecular Function: pyridoxal phosphate binding (GO:0030170))
gwf2_scaffold_6142_23
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

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21643..22383
-----------------
DNA (741bp)
protein (247aa)
putative HtrA2 peptidase (EC:3.4.21.108) Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
HtrA2 peptidase n=1 Tax=Denitrovibrio acetiphilus (strain DSM 12809 / N2460) RepID=D4H7R4_DENA2
protease Do
seg (db=Seg db_id=seg from=2 to=14)
gwf2_scaffold_6142_24
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

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comp(22366..23736)
-----------------
DNA (1371bp)
protein (457aa)
seg Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
seg (db=Seg db_id=seg from=313 to=319)
Displaying 24 items

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