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gwc1_scaffold_376

Alias: WS6_GWC1_33_20_3

Search features with annotation key words

Displaying items 1-30 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwc1_scaffold_376_1
WS6_GWC1_33_20, WS6, Bacteria

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2..3130
-----------------
DNA (3129bp)
protein (1043aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP44375.1}; Flags: Fragment;; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWC1_33_20.;"
hypothetical protein
seg (db=Seg db_id=seg from=33 to=44)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=24)
gwc1_scaffold_376_2
WS6_GWF1_33_233, WS6, Bacteria

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3118..3735
-----------------
DNA (618bp)
protein (206aa)
Glycosyl transferase family 2 n=2 Tax=Clostridium RepID=F1TAW7_9CLOT
Glycosyl transferase family protein {ECO:0000313|EMBL:KKP46006.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
glycosyl transferase family protein
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR22916 from=1 to=185 evalue=1.7e-13)
gwc1_scaffold_376_3

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comp(3981..4523)
-----------------
DNA (543bp)
protein (181aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55481.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
seg (db=Seg db_id=seg from=35 to=60)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
gwc1_scaffold_376_4

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comp(4931..5683)
-----------------
DNA (753bp)
protein (251aa)
Glycosyltransferase, group 2 family protein n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SV85_9FIRM
Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:KKP55480.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
Glycosyl transferase, family 2
seg (db=Seg db_id=seg from=233 to=247)
gwc1_scaffold_376_5
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

Not on your lists

comp(5743..5982)
-----------------
DNA (240bp)
protein (80aa)
transmembrane_regions Tax=RIFOXYB1_FULL_WS6_33_15_curated
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
gwc1_scaffold_376_6

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comp(6045..6869)
-----------------
DNA (825bp)
protein (275aa)
Serine-type D-Ala-D-Ala carboxypeptidase n=2 Tax=Turicibacter RepID=F0HGF8_9FIRM
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:KKP55478.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
D-alanyl-D-alanine carboxypeptidase
seg (db=Seg db_id=seg from=31 to=43)
gwc1_scaffold_376_7

Not on your lists

comp(6897..7535)
-----------------
DNA (639bp)
protein (213aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55477.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
seg (db=Seg db_id=seg from=17 to=30)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
Sortase (db=superfamily db_id=SSF63817 from=69 to=212 evalue=2.3e-08 interpro_id=IPR023365 interpro_description=Peptidase C60A/B, sortase domain)
gwc1_scaffold_376_8
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

7697..7900
-----------------
DNA (204bp)
protein (68aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP46012.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
gwc1_scaffold_376_9
GWD1_WS6_35_594, WS6, Bacteria

Not on your lists


comp(7910..10717)
-----------------
DNA (2808bp)
protein (936aa)
DNA gyrase subunit A n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KHD8_9FIRM rbh
Gyrase subunit A protein {ECO:0000313|EMBL:KKP82366.1}; TaxID=1619092 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWD1_35_594.;"
hypothetical protein
seg (db=Seg db_id=seg from=4 to=18)
gwc1_scaffold_376_10

Not on your lists

comp(10744..11103)
-----------------
DNA (360bp)
protein (120aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55474.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
gwc1_scaffold_376_11
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(11121..13046)
-----------------
DNA (1926bp)
protein (642aa)
Gyrase subunit B, DNA gyrase subunit B protein {ECO:0000313|EMBL:KKP46015.1}; EC=5.99.1.3 {ECO:0000313|EMBL:KKP46015.1};; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate d
DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CDG8_THET1 rbh
seg (db=Seg db_id=seg from=387 to=395)
gwc1_scaffold_376_12
GWD1_WS6_35_594, WS6, Bacteria

Not on your lists

comp(13125..13835)
-----------------
DNA (711bp)
protein (237aa)
DNA polymerase III n=1 Tax=Filifactor alocis (strain ATCC 35896 / D40 B5) RepID=D6GSM8_FILAD
Polymerase III protein {ECO:0000313|EMBL:KKP82363.1}; TaxID=1619092 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWD1_35_594.;"
DNA polymerase III
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=39 to=137 evalue=4.0e-17)
gwc1_scaffold_376_13

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13868..14923
-----------------
DNA (1056bp)
protein (352aa)
Methicillin resistance protein n=1 Tax=Syntrophothermus lipocalidus (strain DSM 12680 / TGB-C1) RepID=D7CK70_SYNLT
Methicillin resistance protein {ECO:0000313|EMBL:KKP55471.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
methicillin resistance protein
(db=HMMPfam db_id=PF02388 from=10 to=117 evalue=2.0e-15 interpro_id=IPR003447 interpro_description=Methicillin resistance protein GO=Molecular Function: transferase activity, transferring amino-acyl groups (GO:0016755))
gwc1_scaffold_376_14
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

Not on your lists

15018..16820
-----------------
DNA (1803bp)
protein (601aa)
type II secretion system protein E n=2 Tax=Saccharobacteria RepID=UPI00016B26A3 rbh
Type II secretion system protein E Tax=RIFOXYB1_FULL_WS6_33_15_curated
hypothetical protein
T2SP_E (db=PatternScan db_id=PS00662 from=381 to=395 evalue=0.0 interpro_id=IPR001482 interpro_description=Type II secretion system protein E GO=Molecular Function: ATP binding (GO:0005524), Cellular Component: intracellular (GO:0005622), Biological Process: transport (GO:0006810))
gwc1_scaffold_376_15
GWD1_WS6_35_594, WS6, Bacteria

Not on your lists

16843..18486
-----------------
DNA (1644bp)
protein (548aa)
twitching motility protein n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B268D rbh
Twitching motility protein {ECO:0000313|EMBL:KKP82360.1}; TaxID=1619092 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWD1_35_594.;"
twitching motility protein
seg (db=Seg db_id=seg from=23 to=33)
gwc1_scaffold_376_16

Not on your lists

18489..19730
-----------------
DNA (1242bp)
protein (414aa)
Type IV pilus inner membrane protein PilC n=2 Tax=Geobacter metallireducens RepID=Q39VU5_GEOMG rbh
Type II secretion system F domain protein {ECO:0000313|EMBL:KKP55468.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
type II secretion system protein
seg (db=Seg db_id=seg from=173 to=191)
gwc1_scaffold_376_17
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

19770..20324
-----------------
DNA (555bp)
protein (185aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP46021.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
seg (db=Seg db_id=seg from=10 to=31)
IV_pilin_GFxxxE: prepilin-type N-term (db=HMMTigr db_id=TIGR02532 from=5 to=28 evalue=0.0044 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
gwc1_scaffold_376_18
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

20400..21161
-----------------
DNA (762bp)
protein (254aa)
Type 4 prepilin-like proteins leader peptide-processing enzyme n=1 Tax=Clostridium ultunense Esp RepID=M1YZF7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KKP46022.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
hypothetical protein
seg (db=Seg db_id=seg from=180 to=189)
gwc1_scaffold_376_19

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21251..22099
-----------------
DNA (849bp)
protein (283aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55465.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
seg (db=Seg db_id=seg from=150 to=163)
IV_pilin_GFxxxE: prepilin-type N-term (db=HMMTigr db_id=TIGR02532 from=8 to=31 evalue=0.0002 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
coiled-coil (db=Coil db_id=coil from=47 to=68 evalue=NA)
gwc1_scaffold_376_20

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22096..22617
-----------------
DNA (522bp)
protein (174aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55464.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
seg (db=Seg db_id=seg from=70 to=80)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
gwc1_scaffold_376_21
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

22614..23315
-----------------
DNA (702bp)
protein (234aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP46025.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
seg (db=Seg db_id=seg from=17 to=29)
IV_pilin_GFxxxE: prepilin-type N-term (db=HMMTigr db_id=TIGR02532 from=8 to=31 evalue=0.0046 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
gwc1_scaffold_376_22
GWD1_WS6_35_594, WS6, Bacteria

Not on your lists

23336..24295
-----------------
DNA (960bp)
protein (320aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP82353.1}; TaxID=1619092 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWD1_35_594.;"
seg (db=Seg db_id=seg from=13 to=26)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=32)
gwc1_scaffold_376_23

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24315..24698
-----------------
DNA (384bp)
protein (128aa)
Response regulator n=1 Tax=Cellvibrio sp. BR RepID=I3IBN7_9GAMM
Response regulator {ECO:0000313|EMBL:KKP55461.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
hypothetical protein
no description (db=Gene3D db_id=G3DSA:3.40.50.2300 from=5 to=126 evalue=1.8e-22)
gwc1_scaffold_376_24
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

24727..25305
-----------------
DNA (579bp)
protein (193aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP46028.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
seg (db=Seg db_id=seg from=14 to=28)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
gwc1_scaffold_376_25
WS6_GWC1_33_20, WS6, Bacteria

Not on your lists

25359..27896
-----------------
DNA (2538bp)
protein (846aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP44399.1}; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWC1_33_20.;"
seg (db=Seg db_id=seg from=10 to=24)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
gwc1_scaffold_376_26
WS6_GWC1_33_20, WS6, Bacteria

Not on your lists

27948..29243
-----------------
DNA (1296bp)
protein (432aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP44400.1}; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWC1_33_20.;"
seg (db=Seg db_id=seg from=6 to=29)
coiled-coil (db=Coil db_id=coil from=29 to=50 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
gwc1_scaffold_376_27
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

29236..31851
-----------------
DNA (2616bp)
protein (872aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP46031.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
seg (db=Seg db_id=seg from=688 to=701)
gwc1_scaffold_376_28

Not on your lists

31919..32950
-----------------
DNA (1032bp)
protein (344aa)
Type IV pilus assembly protein PilM n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KSX7_9BACT
Type IV pilus assembly protein PilM {ECO:0000313|EMBL:KKP55456.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
hypothetical protein
(db=HMMPfam db_id=PF02491 from=182 to=238 evalue=1.0e-07 interpro_id=IPR003494 interpro_description=Cell division protein FtsA domain GO=Biological Process: cell cycle (GO:0007049))
gwc1_scaffold_376_29

Not on your lists

32952..33659
-----------------
DNA (708bp)
protein (236aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55455.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
seg (db=Seg db_id=seg from=79 to=94)
transmembrane_regions (db=TMHMM db_id=tmhmm from=78 to=100)
gwc1_scaffold_376_30

Not on your lists

33662..34354
-----------------
DNA (693bp)
protein (231aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55454.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
seg (db=Seg db_id=seg from=28 to=46)
transmembrane_regions (db=TMHMM db_id=tmhmm from=32 to=54)
Displaying items 1-30 of 55 in total

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