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gwc1_scaffold_701

Alias: WS6_GWC1_33_20_4

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwc1_scaffold_701_1
WS6_GWC1_33_20, WS6, Bacteria

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comp(2..778)
-----------------
DNA (777bp)
protein (259aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Psychromonas ingrahamii (strain 37) RepID=A1STH5_PSYIN
PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:KKP44260.1}; Flags: Fragment;; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate di
PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase
seg (db=Seg db_id=seg from=15 to=27)
gwc1_scaffold_701_2

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comp(788..1318)
-----------------
DNA (531bp)
protein (177aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55335.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
seg (db=Seg db_id=seg from=19 to=31)
transmembrane_regions (db=TMHMM db_id=tmhmm from=31 to=53)
gwc1_scaffold_701_3
WS6_GWC1_33_20, WS6, Bacteria

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comp(1371..2213)
-----------------
DNA (843bp)
protein (281aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP44262.1}; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWC1_33_20.;"
seg (db=Seg db_id=seg from=23 to=47)
coiled-coil (db=Coil db_id=coil from=19 to=47 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=93 to=110)
gwc1_scaffold_701_4
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

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comp(2224..2622)
-----------------
DNA (399bp)
protein (133aa)
seg Tax=RIFOXYB1_FULL_WS6_33_15_curated
seg (db=Seg db_id=seg from=57 to=78)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=34)
gwc1_scaffold_701_5
WS6_GWF1_33_233, WS6, Bacteria

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2667..3350
-----------------
DNA (684bp)
protein (228aa)
two component transcriptional regulator, winged helix family protein n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B25CE
Winged helix family two component transcriptional regulator, two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR {ECO:0000313|EMBL:KKP45871.1}; TaxID=1619096
winged helix family two component transcriptional regulator
seg (db=Seg db_id=seg from=65 to=76)
gwc1_scaffold_701_6

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comp(3331..4452)
-----------------
DNA (1122bp)
protein (374aa)
DNA polymerase III subunit beta (EC:2.7.7.7)
DNA polymerase III subunit beta n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CG53_THET1
Polymerase III subunit beta protein {ECO:0000313|EMBL:KKP55331.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
no description (db=Gene3D db_id=G3DSA:3.10.150.10 from=1 to=117 evalue=2.5e-30 interpro_id=IPR024693 interpro_description=DNA polymerase III beta, domain)
gwc1_scaffold_701_7
WS6_GWF1_33_233, WS6, Bacteria

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comp(4887..6446)
-----------------
DNA (1560bp)
protein (520aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9RYX0_THEOJ rbh
Chromosomal replication initiator protein DnaA, chromosomal replication initiator protein {ECO:0000313|EMBL:KKP45869.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate di
chromosomal replication initiator protein DnaA
no description (db=HMMSmart db_id=SM00760 from=427 to=496 evalue=1.8e-20 interpro_id=IPR013159 interpro_description=Chromosomal replication initiator, DnaA C-terminal GO=Molecular Function: ATP binding (GO:0005524), Biological Process: DNA-dependent DNA replication initiation (GO:0006270), Biological Process: regulation of DNA replication (GO:0006275), Molecular Function: sequence-specific DNA binding (GO:0043565))
gwc1_scaffold_701_8

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6646..6834
-----------------
DNA (189bp)
protein (63aa)
50S ribosomal protein L34 n=15 Tax=Xanthomonadaceae RepID=RL34_STRM5
50S ribosomal protein L34 {ECO:0000313|EMBL:KKP55329.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
50S ribosomal protein L34
RIBOSOMAL_L34 (db=PatternScan db_id=PS00784 from=4 to=23 evalue=0.0 interpro_id=IPR020939 interpro_description=Ribosomal protein L34, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
gwc1_scaffold_701_9

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6848..7198
-----------------
DNA (351bp)
protein (117aa)
Ribonuclease P protein component {ECO:0000313|EMBL:KKP55328.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
(db=HMMPfam db_id=PF00825 from=3 to=109 evalue=1.5e-14 interpro_id=IPR000100 interpro_description=Ribonuclease P GO=Molecular Function: tRNA binding (GO:0000049), Molecular Function: ribonuclease P activity (GO:0004526), Biological Process: tRNA processing (GO:0008033))
rnpA: ribonuclease P protein component (db=HMMTigr db_id=TIGR00188 from=2 to=113 evalue=2.4e-11 interpro_id=IPR000100 interpro_description=Ribonuclease P GO=Molecular Function: tRNA binding (GO:0000049), Molecular Function: ribonuclease P activity (GO:0004526), Biological Process: tRNA processing (GO:0008033))
Ribosomal protein S5 domain 2-like (db=superfamily db_id=SSF54211 from=1 to=115 evalue=4.2e-13 interpro_id=IPR020568 interpro_description=Ribosomal protein S5 domain 2-type fold)
gwc1_scaffold_701_10

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7170..7430
-----------------
DNA (261bp)
protein (87aa)
Putative membrane protein insertion efficiency factor n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S853_PEDSD
Uncharacterized protein {ECO:0000313|EMBL:KKP55327.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
hypothetical protein
TIGR00278: conserved hypothetical protein Y (db=HMMTigr db_id=TIGR00278 from=11 to=86 evalue=1.2e-12 interpro_id=IPR002696 interpro_description=Protein of unknown function DUF37)
gwc1_scaffold_701_11

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7480..8334
-----------------
DNA (855bp)
protein (285aa)
Membrane protein insertase, YidC/Oxa1 family n=6 Tax=Clostridium thermocellum RepID=A3DHZ0_CLOTH
Preprotein translocase YidC subunit {ECO:0000313|EMBL:KKP55326.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
membrane protein
seg (db=Seg db_id=seg from=202 to=213)
gwc1_scaffold_701_12

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8345..8875
-----------------
DNA (531bp)
protein (177aa)
Single-stranded nucleic acid binding R3H domain protein n=1 Tax=Meiothermus silvanus (strain ATCC 700542 / DSM 9946 / VI-R2) RepID=D7BF73_MEISD
Single-stranded nucleic acid binding R3H domain protein {ECO:0000313|EMBL:KKP55325.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_3
single-stranded nucleic acid binding R3H domain-containing protein
seg (db=Seg db_id=seg from=161 to=176)
gwc1_scaffold_701_13

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comp(9038..9619)
-----------------
DNA (582bp)
protein (194aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55324.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
(db=HMMPfam db_id=PF06197 from=37 to=174 evalue=2.8e-08 interpro_id=IPR009339 interpro_description=Protein of unknown function DUF998)
gwc1_scaffold_701_14
WS6_GWF1_33_233, WS6, Bacteria

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comp(9853..11682)
-----------------
DNA (1830bp)
protein (610aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP45862.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
seg (db=Seg db_id=seg from=102 to=134)
(db=HMMPfam db_id=PF04865 from=314 to=419 evalue=0.00012 interpro_id=IPR006949 interpro_description=Baseplate assembly protein J-like, predicted)
transmembrane_regions (db=TMHMM db_id=tmhmm from=216 to=238)
gwc1_scaffold_701_15

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comp(11687..12943)
-----------------
DNA (1257bp)
protein (419aa)
cell division protein (septum formation) n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B214C
Cell division protein (Septum formation) {ECO:0000313|EMBL:KKP55322.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
actin
Actin-like ATPase domain (db=superfamily db_id=SSF53067 from=228 to=382 evalue=1.1e-16)
gwc1_scaffold_701_16
WS6_GWF1_33_233, WS6, Bacteria

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comp(13006..14703)
-----------------
DNA (1698bp)
protein (566aa)
Ribonuclease J n=1 Tax=Bacillus azotoformans LMG 9581 RepID=K6D6Y0_BACAZ rbh
Beta-lactamase {ECO:0000313|EMBL:KKP45860.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
ribonuclease J
CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR (db=HMMPanther db_id=PTHR11203 from=48 to=116 evalue=0.00055)
gwc1_scaffold_701_17
WS6_GWF1_33_233, WS6, Bacteria

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14994..17276
-----------------
DNA (2283bp)
protein (761aa)
Valyl-tRNA synthetase, valyl-tRNA synthetase {ECO:0000313|EMBL:KKP45859.1}; EC=6.1.1.9 {ECO:0000313|EMBL:KKP45859.1};; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate divi
valyl-tRNA synthetase (EC:6.1.1.9)
Valine--tRNA ligase n=1 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=B8CY39_HALOH rbh
AA_TRNA_LIGASE_I (db=PatternScan db_id=PS00178 from=55 to=66 evalue=0.0 interpro_id=IPR001412 interpro_description=Aminoacyl-tRNA synthetase, class I, conserved site GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: tRNA aminoacylation for protein translation (GO:0006418))
gwc1_scaffold_701_18
WS6_GWF1_33_233, WS6, Bacteria

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comp(17546..19324)
-----------------
DNA (1779bp)
protein (593aa)
Methionyl-tRNA synthetase, methionyl-tRNA synthetase {ECO:0000313|EMBL:KKP45858.1}; EC=6.1.1.10 {ECO:0000313|EMBL:KKP45858.1};; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candi
Methionyl-tRNA synthetase n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-N05 RepID=M7TWX7_9EURY rbh
Methionyl-tRNA synthetase
AA_TRNA_LIGASE_I (db=PatternScan db_id=PS00178 from=30 to=41 evalue=0.0 interpro_id=IPR001412 interpro_description=Aminoacyl-tRNA synthetase, class I, conserved site GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: tRNA aminoacylation for protein translation (GO:0006418))
gwc1_scaffold_701_19
WS6_GWF1_33_233, WS6, Bacteria

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19386..19943
-----------------
DNA (558bp)
protein (186aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP45857.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=30 to=52)
gwc1_scaffold_701_20

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19946..20563
-----------------
DNA (618bp)
protein (206aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55316.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=26 to=48)
gwc1_scaffold_701_21

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20612..20806
-----------------
DNA (195bp)
protein (65aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55315.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
gwc1_scaffold_701_22
GWD1_WS6_35_594, WS6, Bacteria

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comp(20803..21891)
-----------------
DNA (1089bp)
protein (363aa)
RNA polymerase sigma factor n=1 Tax=Peptoniphilus duerdenii ATCC BAA-1640 RepID=E0NLJ5_9FIRM rbh
RNA polymerase sigma factor {ECO:0000313|EMBL:KKP82655.1}; TaxID=1619092 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWD1_35_594.;"
RNA polymerase sigma-70 subunit RpoD
seg (db=Seg db_id=seg from=340 to=358)
gwc1_scaffold_701_23

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21918..22262
-----------------
DNA (345bp)
protein (115aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55313.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
gwc1_scaffold_701_24
WS6_GWF1_33_233, WS6, Bacteria

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comp(22263..25265)
-----------------
DNA (3003bp)
protein (1001aa)
Uncharacterized protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I4X4_CALAS
Uncharacterized protein {ECO:0000313|EMBL:KKP45852.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
GDP-mannose 4,6 dehydratase ISS
seg (db=Seg db_id=seg from=429 to=440)
gwc1_scaffold_701_25
WS6_GWF1_33_233, WS6, Bacteria

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comp(25258..25908)
-----------------
DNA (651bp)
protein (217aa)
WD40-domain containing protein n=1 Tax=Thermococcus zilligii AN1 RepID=UPI00029A5CED
WD40-domain containing protein {ECO:0000313|EMBL:KKP45851.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
seg (db=Seg db_id=seg from=6 to=23)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
gwc1_scaffold_701_26
WS6_GWF1_33_233, WS6, Bacteria

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comp(25950..27158)
-----------------
DNA (1209bp)
protein (403aa)
Glycosyl transferase family protein, UDP-N-acetylglucosamine:undecaprenyl-P N-acetylglucosaminyl 1-P transferase {ECO:0000313|EMBL:KKP45850.1}; EC=2.7.8.- {ECO:0000313|EMBL:KKP45850.1};; TaxID=1619096
Glycosyl transferase family 4 n=1 Tax=Geobacillus sp. (strain WCH70) RepID=C5D876_GEOSW
glycosyl transferase family protein
seg (db=Seg db_id=seg from=34 to=45)
gwc1_scaffold_701_27

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comp(27165..27617)
-----------------
DNA (453bp)
protein (151aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55309.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
seg (db=Seg db_id=seg from=47 to=64)
transmembrane_regions (db=TMHMM db_id=tmhmm from=47 to=69)
gwc1_scaffold_701_28
WS6_GWF1_33_233, WS6, Bacteria

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comp(27639..28367)
-----------------
DNA (729bp)
protein (243aa)
Ribosomal RNA small subunit methyltransferase A n=3 Tax=Francisella RepID=RSMA_FRAP2
16S rRNA methyltransferase {ECO:0000313|EMBL:KKP45848.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
16S rRNA methyltransferase
RRNA_A_DIMETH (db=PatternScan db_id=PS01131 from=33 to=60 evalue=0.0 interpro_id=IPR020596 interpro_description=Ribosomal RNA adenine methylase transferase, conserved site GO=Biological Process: rRNA modification (GO:0000154), Molecular Function: rRNA (adenine-N6,N6-)-dimethyltransferase activity (GO:0000179), Molecular Function: rRNA methyltransferase activity (GO:0008649))
gwc1_scaffold_701_29
WS6_GWF1_33_233, WS6, Bacteria

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comp(28367..29293)
-----------------
DNA (927bp)
protein (309aa)
Putative uncharacterized protein n=1 Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8N162_ANATU
Uncharacterized protein {ECO:0000313|EMBL:KKP45847.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
hypothetical protein
(db=HMMPfam db_id=PF08241 from=47 to=140 evalue=3.0e-11 interpro_id=IPR013216 interpro_description=Methyltransferase type 11 GO=Biological Process: metabolic process (GO:0008152), Molecular Function: methyltransferase activity (GO:0008168))
gwc1_scaffold_701_30
WS6_GWF1_33_233, WS6, Bacteria

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comp(29271..29867)
-----------------
DNA (597bp)
protein (199aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP45846.1}; Flags: Fragment;; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
coiled-coil (db=Coil db_id=coil from=175 to=196 evalue=NA)
Displaying 30 items

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