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This organism can only be binned in the context of its binning project GWA2. Please contact the project owner (jbanfield@berkeley.edu) to become a member and gain access.

gwc1_scaffold_1048

Alias: WS6_GWC1_33_20_6

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwc1_scaffold_1048_1

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comp(3..155)
-----------------
DNA (153bp)
protein (51aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP54585.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
seg (db=Seg db_id=seg from=7 to=21)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
gwc1_scaffold_1048_2

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comp(173..1180)
-----------------
DNA (1008bp)
protein (336aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP54584.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
seg (db=Seg db_id=seg from=48 to=61)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=34)
gwc1_scaffold_1048_3

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comp(1204..1503)
-----------------
DNA (300bp)
protein (100aa)
Phage shock protein C, PspC n=2 Tax=Thermoanaerobacterium thermosaccharolyticum RepID=D9TNL0_THETC
Phage shock protein C, PspC {ECO:0000313|EMBL:KKP54583.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
putative stress-responsive transcriptional regulator
seg (db=Seg db_id=seg from=38 to=53)
gwc1_scaffold_1048_4
GWD1_WS6_35_594, WS6, Bacteria

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1645..2049
-----------------
DNA (405bp)
protein (135aa)
Putative uncharacterized protein n=1 Tax=Micromonospora sp. (strain L5) RepID=E8SB91_MICSL
Uncharacterized protein {ECO:0000313|EMBL:KKP81872.1}; TaxID=1619092 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWD1_35_594.;"
hypothetical protein
seg (db=Seg db_id=seg from=3 to=21)
gwc1_scaffold_1048_5
GWD1_WS6_35_594, WS6, Bacteria

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2057..4294
-----------------
DNA (2238bp)
protein (746aa)
ATPase, E1-E2 type:Copper-translocating P-type ATPase:Heavy metal translocating P-type ATPase n=1 Tax=Chlorobium ferrooxidans DSM 13031 RepID=Q0YT77_9CHLB rbh
ATPase, E1-E2 type:Copper-translocating P-type ATPase:Heavy metal translocating P-type ATPase {ECO:0000313|EMBL:KKP81871.1}; TaxID=1619092 species="Bacteria; candidate division WS6.;" source="candidat
heavy metal translocating P-type ATPase
transmembrane_regions (db=TMHMM db_id=tmhmm from=89 to=108)
gwc1_scaffold_1048_6
GWD1_WS6_35_594, WS6, Bacteria

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4296..5303
-----------------
DNA (1008bp)
protein (336aa)
Heavy metal transport/detoxification protein n=1 Tax=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) RepID=B8I7W6_CLOCE
Heavy metal transport/detoxification protein {ECO:0000313|EMBL:KKP81870.1}; TaxID=1619092 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWD1_35_594.;"
hypothetical protein
coiled-coil (db=Coil db_id=coil from=21 to=42 evalue=NA)
gwc1_scaffold_1048_7
WS6_GWF1_33_233, WS6, Bacteria

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5322..5594
-----------------
DNA (273bp)
protein (91aa)
Uncharacterized protein n=1 Tax=Anaerococcus prevotii (strain ATCC 9321 / DSM 20548 / JCM 6508 / PC1) RepID=C7RHQ5_ANAPD
Uncharacterized protein {ECO:0000313|EMBL:KKP45042.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
hypothetical protein
(db=HMMPfam db_id=PF02583 from=3 to=84 evalue=4.4e-15 interpro_id=IPR003735 interpro_description=Protein of unknown function DUF156)
gwc1_scaffold_1048_8

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5596..5853
-----------------
DNA (258bp)
protein (86aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP54578.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
gwc1_scaffold_1048_9
WS6_GWF1_33_233, WS6, Bacteria

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comp(5945..7612)
-----------------
DNA (1668bp)
protein (556aa)
Glutamyl-tRNA synthetase, glutamyl-tRNA synthetase {ECO:0000313|EMBL:KKP45040.1}; EC=6.1.1.17 {ECO:0000313|EMBL:KKP45040.1};; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candida
gltX; Glutamate-tRNA ligase (EC:6.1.1.17)
UPI00019B08AF related cluster n=1 Tax=unknown RepID=UPI00019B08AF rbh
seg (db=Seg db_id=seg from=439 to=448)
gwc1_scaffold_1048_10

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7674..8981
-----------------
DNA (1308bp)
protein (436aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP54576.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
seg (db=Seg db_id=seg from=13 to=32)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
gwc1_scaffold_1048_11
WS6_GWC1_33_20, WS6, Bacteria

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comp(8973..10040)
-----------------
DNA (1068bp)
protein (356aa)
Serine-type D-Ala-D-Ala carboxypeptidase, D-alanyl-D-alanine carboxypeptidase (Penicillin-binding protein 5/6) {ECO:0000313|EMBL:KKP44090.1}; EC=3.4.16.4 {ECO:0000313|EMBL:KKP44090.1};; TaxID=1619089
dacF1; D-alanyl-D-alanine carboxypeptidase DacF (EC:3.4.16.4)
Protein containing Peptidase S11, D-alanyl-D-alanine carboxypeptidase A domain n=1 Tax=sediment metagenome RepID=D9PKA1_9ZZZZ
seg (db=Seg db_id=seg from=30 to=47)
gwc1_scaffold_1048_12
WS6_GWC1_33_20, WS6, Bacteria

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10144..11529
-----------------
DNA (1386bp)
protein (462aa)
tRNA synthetase class II (D K and N), aspartyl-tRNA synthetase {ECO:0000313|EMBL:KKP44091.1}; EC=6.1.1.12 {ECO:0000313|EMBL:KKP44091.1};; TaxID=1619089 species="Bacteria; candidate division WS6.;" sou
tRNA synthetase class II (D K and N) n=2 Tax=Ruminococcus albus RepID=E6UAF2_RUMA7 rbh
hypothetical protein
seg (db=Seg db_id=seg from=28 to=39)
gwc1_scaffold_1048_13

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comp(11522..13219)
-----------------
DNA (1698bp)
protein (566aa)
exonuclease RecJ (EC:3.1.-.-)
Exonuclease RecJ n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8M330_CLOCD rbh
Exonuclease RecJ {ECO:0000313|EMBL:KKP54573.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
DHH phosphoesterases (db=superfamily db_id=SSF64182 from=43 to=453 evalue=4.6e-92)
gwc1_scaffold_1048_14
WS6_GWF1_33_233, WS6, Bacteria

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comp(13203..13856)
-----------------
DNA (654bp)
protein (218aa)
Regulatory protein RecX n=1 Tax=Bacillus smithii 7_3_47FAA RepID=G9QN47_9BACI
Regulatory protein RecX, regulatory protein {ECO:0000313|EMBL:KKP45034.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
regulatory protein RecX
(db=HMMPfam db_id=PF02631 from=107 to=212 evalue=2.4e-23 interpro_id=IPR003783 interpro_description=Regulatory protein RecX GO=Biological Process: regulation of DNA repair (GO:0006282))
gwc1_scaffold_1048_15
WS6_GWF1_33_233, WS6, Bacteria

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comp(13857..14882)
-----------------
DNA (1026bp)
protein (342aa)
Protein RecA n=1 Tax=Ruminococcus sp. SR1/5 RepID=D4LMV0_9FIRM rbh
Recombinase A, recombination protein RecA {ECO:0000313|EMBL:KKP45033.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
protein RecA
seg (db=Seg db_id=seg from=192 to=203)
gwc1_scaffold_1048_16

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comp(14972..15556)
-----------------
DNA (585bp)
protein (195aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP54570.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
seg (db=Seg db_id=seg from=79 to=93)
gwc1_scaffold_1048_17

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15672..16367
-----------------
DNA (696bp)
protein (232aa)
Putative uncharacterized protein n=1 Tax=Fischerella sp. JSC-11 RepID=G6FRT2_9CYAN
Uncharacterized protein {ECO:0000313|EMBL:KKP54569.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
seg (db=Seg db_id=seg from=154 to=176)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
gwc1_scaffold_1048_18

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comp(16414..17580)
-----------------
DNA (1167bp)
protein (389aa)
Uncharacterized protein n=1 Tax=Thermovirga lienii (strain ATCC BAA-1197 / DSM 17291 / Cas60314) RepID=G7V5I2_THELD
Uncharacterized protein {ECO:0000313|EMBL:KKP54568.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
hypothetical protein
seg (db=Seg db_id=seg from=3 to=22)
gwc1_scaffold_1048_19
WS6_GWF1_33_233, WS6, Bacteria

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17645..18886
-----------------
DNA (1242bp)
protein (414aa)
polysaccharide biosynthesis protein n=1 Tax=Flavobacteriaceae bacterium HQM9 RepID=UPI000248E8EE
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:KKP45029.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
seg (db=Seg db_id=seg from=61 to=72)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
gwc1_scaffold_1048_20
WS6_GWF1_33_233, WS6, Bacteria

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18858..19325
-----------------
DNA (468bp)
protein (156aa)
Large-conductance mechanosensitive channel n=3 Tax=Desulfitobacterium hafniense RepID=MSCL_DESHD
Large-conductance mechanosensitive channel, large conductance mechanosensitive channel {ECO:0000313|EMBL:KKP45028.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate divis
mscL; large-conductance mechanosensitive channel
seg (db=Seg db_id=seg from=97 to=107)
gwc1_scaffold_1048_21

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comp(19411..19596)
-----------------
DNA (186bp)
protein (62aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP54565.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
seg (db=Seg db_id=seg from=27 to=46)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=24)
gwc1_scaffold_1048_22
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

19673..20431
-----------------
DNA (759bp)
protein (253aa)
RNA methylase n=1 Tax=Micromonospora sp. (strain L5) RepID=E8RW96_MICSL
RNA methylase {ECO:0000313|EMBL:KKP45026.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
RNA methylase
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=14 to=238 evalue=2.6e-21)
gwc1_scaffold_1048_23

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comp(20428..20916)
-----------------
DNA (489bp)
protein (163aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP54563.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
seg (db=Seg db_id=seg from=61 to=76)
transmembrane_regions (db=TMHMM db_id=tmhmm from=28 to=50)
gwc1_scaffold_1048_24

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21244..22515
-----------------
DNA (1272bp)
protein (424aa)
enolase (EC:4.2.1.11)
Enolase n=8 Tax=Lactobacillus RepID=F4FWX9_LACBN rbh
Enolase {ECO:0000313|EMBL:KKP54562.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
ENOLASE (db=PatternScan db_id=PS00164 from=346 to=359 evalue=0.0 interpro_id=IPR020809 interpro_description=Enolase, conserved site GO=Cellular Component: phosphopyruvate hydratase complex (GO:0000015), Molecular Function: magnesium ion binding (GO:0000287), Molecular Function: phosphopyruvate hydratase activity (GO:0004634), Biological Process: glycolysis (GO:0006096))
gwc1_scaffold_1048_25
WS6_GWC1_33_20, WS6, Bacteria

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comp(22546..22899)
-----------------
DNA (354bp)
protein (118aa)
O-sialoglycoprotein endopeptidase, O-sialoglycoprotein endopeptidase {ECO:0000313|EMBL:KKP44104.1}; EC=3.4.24.57 {ECO:0000313|EMBL:KKP44104.1};; Flags: Fragment;; TaxID=1619089 species="Bacteria; cand
O-sialoglycoprotein endopeptidase (EC:3.4.24.57)
Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp n=1 Tax=Halanaerobium praevalens (strain ATCC 33744 / DSM 2228 / GSL) RepID=E3DPI4_HALPG
O-SIALOGLYCOPROTEIN ENDOPEPTIDASE (db=HMMPanther db_id=PTHR11735 from=14 to=96 evalue=1.5e-08)
Displaying 25 items

View Taxonomy