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gwc1_scaffold_1136

Alias: WS6_GWC1_33_20_8

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwc1_scaffold_1136_1

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3..722
-----------------
DNA (720bp)
protein (240aa)
Beta-hexosaminidase n=1 Tax=Halanaerobium saccharolyticum subsp. saccharolyticum DSM 6643 RepID=M5DZ30_9FIRM
Lipoprotein ybbD {ECO:0000313|EMBL:KKP55253.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
glycoside hydrolase family 3 domain protein
no description (db=Gene3D db_id=G3DSA:3.20.20.300 from=12 to=236 evalue=1.9e-47 interpro_id=IPR001764 interpro_description=Glycoside hydrolase, family 3, N-terminal GO=Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553), Biological Process: carbohydrate metabolic process (GO:0005975))
gwc1_scaffold_1136_2
WS6_GWF1_33_233, WS6, Bacteria

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comp(723..1469)
-----------------
DNA (747bp)
protein (249aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP45692.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
seg (db=Seg db_id=seg from=5 to=24)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
gwc1_scaffold_1136_3
WS6_GWC1_33_20, WS6, Bacteria

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comp(1787..3046)
-----------------
DNA (1260bp)
protein (420aa)
Putative membrane protein n=1 Tax=Clostridium ljungdahlii (strain ATCC 55383 / DSM 13528 / PETC) RepID=D8GIF1_CLOLD
Uncharacterized protein {ECO:0000313|EMBL:KKP43944.1}; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWC1_33_20.;"
hypothetical protein
seg (db=Seg db_id=seg from=9 to=27)
gwc1_scaffold_1136_4

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comp(3024..4001)
-----------------
DNA (978bp)
protein (326aa)
Putative uncharacterized protein n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KTG5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKP55250.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
Integral membrane protein
seg (db=Seg db_id=seg from=11 to=26)
gwc1_scaffold_1136_5

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comp(3988..4899)
-----------------
DNA (912bp)
protein (304aa)
Glycosyl transferase family 2 n=1 Tax=Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 / Av18) RepID=D2RDS2_ARCPA
Glycosyl transferase family 2 {ECO:0000313|EMBL:KKP55249.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
family 2 glycosyl transferase
seg (db=Seg db_id=seg from=234 to=262)
gwc1_scaffold_1136_6
WS6_GWC1_33_20, WS6, Bacteria

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comp(4975..5826)
-----------------
DNA (852bp)
protein (284aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP43947.1}; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWC1_33_20.;"
seg (db=Seg db_id=seg from=34 to=54)
transmembrane_regions (db=TMHMM db_id=tmhmm from=32 to=54)
gwc1_scaffold_1136_7

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5903..6427
-----------------
DNA (525bp)
protein (175aa)
dcd; deoxycytidine triphosphate deaminase (EC:3.5.4.13)
Probable deoxycytidine triphosphate deaminase n=3 Tax=Methanobrevibacter smithii RepID=DCD_METS3
Putative deoxycytidine triphosphate deaminase {ECO:0000313|EMBL:KKP55247.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
dUTPase-like (db=superfamily db_id=SSF51283 from=1 to=173 evalue=1.1e-21)
gwc1_scaffold_1136_8
WS6_GWF1_33_233, WS6, Bacteria

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comp(6480..6857)
-----------------
DNA (378bp)
protein (126aa)
Uncharacterized protein n=5 Tax=Methanosarcinaceae RepID=Q8PZF7_METMA
Uncharacterized protein {ECO:0000313|EMBL:KKP45686.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
mannose-6-phosphate isomerase
no description (db=Gene3D db_id=G3DSA:2.60.120.10 from=22 to=100 evalue=1.2e-12 interpro_id=IPR014710 interpro_description=RmlC-like jelly roll fold)
gwc1_scaffold_1136_9

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6979..7449
-----------------
DNA (471bp)
protein (157aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55245.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
gwc1_scaffold_1136_10
WS6_GWF1_33_233, WS6, Bacteria

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comp(7455..7889)
-----------------
DNA (435bp)
protein (145aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP45684.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
seg (db=Seg db_id=seg from=2 to=15)
gwc1_scaffold_1136_11

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7981..8790
-----------------
DNA (810bp)
protein (270aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55243.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
gwc1_scaffold_1136_12
WS6_GWF1_33_233, WS6, Bacteria

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8886..10052
-----------------
DNA (1167bp)
protein (389aa)
Cysteine desulfurase NifS, cysteine desulfurase {ECO:0000313|EMBL:KKP45682.1}; EC=2.8.1.7 {ECO:0000313|EMBL:KKP45682.1};; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate d
Cysteine desulfurase n=2 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LU59_CLOCD rbh
cysteine desulfurase NifS
seg (db=Seg db_id=seg from=317 to=330)
gwc1_scaffold_1136_13
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

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10057..10440
-----------------
DNA (384bp)
protein (128aa)
FeS cluster assembly scaffold protein NifU n=6 Tax=Clostridium thermocellum RepID=A3DDC7_CLOTH
FeS cluster assembly scaffold protein NifU; K04488 nitrogen fixation protein NifU and related proteins Tax=RIFOXYB1_FULL_WS6_33_15_curated
FeS cluster assembly scaffold protein NifU
IRON-SULFUR CLUSTER ASSEMBLY ENZYME (NIFU HOMOLOG) (db=HMMPanther db_id=PTHR10093 from=1 to=122 evalue=1.3e-58)
gwc1_scaffold_1136_14
GWD1_WS6_35_594, WS6, Bacteria

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10460..11491
-----------------
DNA (1032bp)
protein (344aa)
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61)
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LU57_CLOCD rbh
tRNA-specific 2-thiouridylase MnmA {ECO:0000313|EMBL:KKP82203.1}; TaxID=1619092 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWD1_35_594.;"
seg (db=Seg db_id=seg from=160 to=173)
gwc1_scaffold_1136_15
GWD1_WS6_35_594, WS6, Bacteria

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11555..12316
-----------------
DNA (762bp)
protein (254aa)
Uncharacterized protein n=2 Tax=Mesotoga RepID=I2F692_9THEM rbh
Uncharacterized protein {ECO:0000313|EMBL:KKP82202.1}; TaxID=1619092 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWD1_35_594.;"
hypothetical protein
seg (db=Seg db_id=seg from=106 to=116)
gwc1_scaffold_1136_16
WS6_GWC1_33_20, WS6, Bacteria

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12390..12896
-----------------
DNA (507bp)
protein (169aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP43957.1}; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWC1_33_20.;"
seg (db=Seg db_id=seg from=125 to=136)
gwc1_scaffold_1136_17
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

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comp(12898..13521)
-----------------
DNA (624bp)
protein (208aa)
coiled-coil Tax=RIFOXYB1_FULL_WS6_33_15_curated
coiled-coil (db=Coil db_id=coil from=4 to=25 evalue=NA)
gwc1_scaffold_1136_18
WS6_GWF1_33_233, WS6, Bacteria

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13615..14241
-----------------
DNA (627bp)
protein (209aa)
Uncharacterized protein n=1 Tax=Methanosaeta harundinacea (strain 6Ac) RepID=G7WPW1_METH6
Uncharacterized protein {ECO:0000313|EMBL:KKP45676.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
hypothetical protein
seg (db=Seg db_id=seg from=2 to=19)
gwc1_scaffold_1136_19
WS6_GWF1_33_233, WS6, Bacteria

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14274..14657
-----------------
DNA (384bp)
protein (128aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP45675.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=23)
gwc1_scaffold_1136_20

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14735..15523
-----------------
DNA (789bp)
protein (263aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55234.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
no description (db=Gene3D db_id=G3DSA:3.40.50.1000 from=15 to=262 evalue=1.2e-06 interpro_id=IPR023214 interpro_description=HAD-like domain)
HAD-like (db=superfamily db_id=SSF56784 from=18 to=262 evalue=1.1e-17 interpro_id=IPR023214 interpro_description=HAD-like domain)
(db=HMMPfam db_id=PF00702 from=23 to=223 evalue=2.4e-09 interpro_id=IPR005834 interpro_description=Haloacid dehalogenase-like hydrolase GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
gwc1_scaffold_1136_21
WS6_GWF1_33_233, WS6, Bacteria

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comp(15520..16857)
-----------------
DNA (1338bp)
protein (446aa)
NAD(FAD)-utilizing dehydrogenase n=1 Tax=human gut metagenome RepID=K1SBC2_9ZZZZ rbh
Uncharacterized protein {ECO:0000313|EMBL:KKP45673.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
hypothetical protein
seg (db=Seg db_id=seg from=275 to=288)
gwc1_scaffold_1136_22
WS6_GWF1_33_233, WS6, Bacteria

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comp(16938..18458)
-----------------
DNA (1521bp)
protein (507aa)
ATPase component of ABC transporters with duplicated ATPase domain n=1 Tax=actinobacterium SCGC AAA027-L06 RepID=J9HGW8_9ACTN rbh
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KKP45672.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
multidrug ABC transporter ATP-binding protein
seg (db=Seg db_id=seg from=3 to=10)
gwc1_scaffold_1136_23

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18541..19155
-----------------
DNA (615bp)
protein (205aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrosopumilus sp. AR2 RepID=K0BCV5_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:KKP55231.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
hypothetical protein
seg (db=Seg db_id=seg from=24 to=33)
gwc1_scaffold_1136_24
WS6_GWF1_33_233, WS6, Bacteria

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19205..19696
-----------------
DNA (492bp)
protein (164aa)
Peptide deformylase, peptide deformylase {ECO:0000313|EMBL:KKP45670.1}; EC=3.5.1.88 {ECO:0000313|EMBL:KKP45670.1};; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate divisio
formylmethionine deformylase n=1 Tax=Flavobacteriaceae bacterium HQM9 RepID=UPI000248FCC6
polypeptide deformylase
POLYPEPTIDE DEFORMYLASE (db=HMMPanther db_id=PTHR10458 from=10 to=163 evalue=1.5e-29 interpro_id=IPR000181 interpro_description=Formylmethionine deformylase GO=Molecular Function: iron ion binding (GO:0005506), Molecular Function: peptide deformylase activity (GO:0042586))
gwc1_scaffold_1136_25
WS6_GWF1_33_233, WS6, Bacteria

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19757..20926
-----------------
DNA (1170bp)
protein (390aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP45669.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
seg (db=Seg db_id=seg from=4 to=19)
transmembrane_regions (db=TMHMM db_id=tmhmm from=261 to=283)
gwc1_scaffold_1136_26
GWD1_WS6_35_594, WS6, Bacteria

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comp(21045..22826)
-----------------
DNA (1782bp)
protein (594aa)
Putative ABC transporter substrate binding protein n=1 Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8N400_ANATU
Uncharacterized protein {ECO:0000313|EMBL:KKP82191.1}; TaxID=1619092 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWD1_35_594.;"
putative ABC transporter substrate binding protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=63 to=80)
gwc1_scaffold_1136_27
GWD1_WS6_35_594, WS6, Bacteria

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comp(22834..23067)
-----------------
DNA (234bp)
protein (78aa)
Preprotein translocase, SecG subunit n=7 Tax=Dehalococcoides mccartyi RepID=A5FPJ9_DEHSB
Preprotein translocase, SecG subunit {ECO:0000313|EMBL:KKP82190.1}; TaxID=1619092 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWD1_35_594.;"
preprotein translocase subunit SecG
seg (db=Seg db_id=seg from=14 to=26)
gwc1_scaffold_1136_28

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comp(23086..23175)
-----------------
DNA (90bp)
protein (30aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55226.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=26)
Displaying 28 items

View Taxonomy