ggKbase home page

gwc1_scaffold_1626

Alias: WS6_GWC1_33_20_11

Search features with annotation key words

Displaying items 1-30 of 76 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwc1_scaffold_1626_1
WS6_GWC1_33_20, WS6, Bacteria

Not on your lists


comp(3..833)
-----------------
DNA (831bp)
protein (277aa)
O-sialoglycoprotein endopeptidase, O-sialoglycoprotein endopeptidase {ECO:0000313|EMBL:KKP43747.1}; EC=3.4.24.57 {ECO:0000313|EMBL:KKP43747.1};; Flags: Fragment;; TaxID=1619089 species="Bacteria; cand
Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=D2Z8W9_9BACT
O-sialoglycoprotein endopeptidase
seg (db=Seg db_id=seg from=126 to=139)
gwc1_scaffold_1626_2
WS6_GWC1_33_20, WS6, Bacteria

Not on your lists

comp(820..1035)
-----------------
DNA (216bp)
protein (72aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP43748.1}; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWC1_33_20.;"
(db=HMMPfam db_id=PF02367 from=1 to=40 evalue=2.7e-05 interpro_id=IPR003442 interpro_description=Uncharacterised domain UPF0079, ATPase bacteria)
gwc1_scaffold_1626_3
WS6_GWC1_33_20, WS6, Bacteria

Not on your lists

1076..1300
-----------------
DNA (225bp)
protein (75aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP43749.1}; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWC1_33_20.;"
seg (db=Seg db_id=seg from=53 to=71)
gwc1_scaffold_1626_4
WS6_GWC1_33_20, WS6, Bacteria

Not on your lists

comp(1286..1777)
-----------------
DNA (492bp)
protein (164aa)
Sua5/YciO/YrdC/YwlC family protein n=1 Tax=Methanoplanus petrolearius (strain DSM 11571 / OCM 486 / SEBR 4847) RepID=E1RJ56_METP4
Sua5/YciO/YrdC/YwlC family protein, tRNA threonylcarbamoyladenosine biosynthesis protein {ECO:0000313|EMBL:KKP43750.1}; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate div
Sua5/YciO/YrdC/YwlC family protein
no description (db=Gene3D db_id=G3DSA:3.90.870.10 from=6 to=160 evalue=1.1e-34 interpro_id=IPR017945 interpro_description=DHBP synthase RibB-like alpha/beta domain)
gwc1_scaffold_1626_5
WS6_GWC1_33_20, WS6, Bacteria

Not on your lists

1842..2162
-----------------
DNA (321bp)
protein (107aa)
Thioredoxin n=8 Tax=Geobacillus RepID=C9RU22_GEOSY
Thioredoxin, thioredoxin 1 {ECO:0000313|EMBL:KKP43751.1}; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWC1_33_20.;"
trxA; thioredoxin
THIOREDOXIN_1 (db=PatternScan db_id=PS00194 from=23 to=41 evalue=0.0 interpro_id=IPR017937 interpro_description=Thioredoxin, conserved site GO=Biological Process: cell redox homeostasis (GO:0045454))
gwc1_scaffold_1626_6
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

Not on your lists

comp(2159..3049)
-----------------
DNA (891bp)
protein (297aa)
Diguanylate cyclase n=1 Tax=Thermodesulfobacterium sp. (strain OPB45) RepID=F8C662_THESO
diguanylate cyclase Tax=RIFOXYB1_FULL_WS6_33_15_curated
diguanylate cyclase
Nucleotide cyclase (db=superfamily db_id=SSF55073 from=129 to=295 evalue=1.3e-36 interpro_id=IPR001054 interpro_description=Adenylyl cyclase class-3/4/guanylyl cyclase GO=Biological Process: cyclic nucleotide biosynthetic process (GO:0009190), Molecular Function: phosphorus-oxygen lyase activity (GO:0016849), Biological Process: intracellular signal transduction (GO:0035556))
gwc1_scaffold_1626_7
WS6_GWC1_33_20, WS6, Bacteria

Not on your lists

comp(3136..4695)
-----------------
DNA (1560bp)
protein (520aa)
Resolvase n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3ST80_NITWN
Resolvase {ECO:0000313|EMBL:KKP43753.1}; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWC1_33_20.;"
resolvase
coiled-coil (db=Coil db_id=coil from=371 to=392 evalue=NA)
gwc1_scaffold_1626_8
WS6_GWC1_33_20, WS6, Bacteria

Not on your lists

comp(4729..4917)
-----------------
DNA (189bp)
protein (63aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP43754.1}; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWC1_33_20.;"
gwc1_scaffold_1626_9
WS6_GWC1_33_20, WS6, Bacteria

Not on your lists

comp(4990..5793)
-----------------
DNA (804bp)
protein (268aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP43755.1}; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWC1_33_20.;"
seg (db=Seg db_id=seg from=74 to=87)
gwc1_scaffold_1626_10
WS6_GWC1_33_20, WS6, Bacteria

Not on your lists

comp(5750..5929)
-----------------
DNA (180bp)
protein (60aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP43756.1}; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWC1_33_20.;"
gwc1_scaffold_1626_11
WS6_GWC1_33_20, WS6, Bacteria

Not on your lists

comp(5919..6179)
-----------------
DNA (261bp)
protein (87aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP43757.1}; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWC1_33_20.;"
gwc1_scaffold_1626_12
WS6_GWC1_33_20, WS6, Bacteria

Not on your lists

comp(6240..7067)
-----------------
DNA (828bp)
protein (276aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP43758.1}; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWC1_33_20.;"
gwc1_scaffold_1626_13
WS6_GWC1_33_20, WS6, Bacteria

Not on your lists

comp(7064..10048)
-----------------
DNA (2985bp)
protein (995aa)
Type ii site-specific deoxyribonuclease {ECO:0000313|EMBL:KKP43759.1}; EC=3.1.21.4 {ECO:0000313|EMBL:KKP43759.1};; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate division
type ii site-specific deoxyribonuclease (EC:3.1.21.4)
Type II site-specific deoxyribonuclease n=1 Tax=Methanobacterium sp. (strain AL-21) RepID=F0TCA1_METSL rbh
seg (db=Seg db_id=seg from=827 to=840)
gwc1_scaffold_1626_14
WS6_GWC1_33_20, WS6, Bacteria

Not on your lists

comp(10096..10584)
-----------------
DNA (489bp)
protein (163aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP43760.1}; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWC1_33_20.;"
(db=HMMPfam db_id=PF03592 from=11 to=112 evalue=1.1e-06 interpro_id=IPR005335 interpro_description=Terminase, small subunit GO=Biological Process: DNA packaging (GO:0006323))
gwc1_scaffold_1626_15
WS6_GWC1_33_20, WS6, Bacteria

Not on your lists

10706..12781
-----------------
DNA (2076bp)
protein (692aa)
Putative uncharacterized protein n=1 Tax=Flavobacteriaceae bacterium (strain 3519-10) RepID=C6X556_FLAB3 rbh
Uncharacterized protein {ECO:0000313|EMBL:KKP43761.1}; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWC1_33_20.;"
hypothetical protein
seg (db=Seg db_id=seg from=567 to=579)
gwc1_scaffold_1626_16
WS6_GWC1_33_20, WS6, Bacteria

Not on your lists

comp(12791..13765)
-----------------
DNA (975bp)
protein (325aa)
DNA translocase n=1 Tax=Bacillus alcalophilus ATCC 27647 RepID=J8TNN1_BACAO
Primosome, DnaD subunit, DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family {ECO:0000313|EMBL:KKP43762.1}; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate division WS6 ba
primosome, DnaD subunit
seg (db=Seg db_id=seg from=198 to=213)
gwc1_scaffold_1626_17
WS6_GWC1_33_20, WS6, Bacteria

Not on your lists

comp(13854..14363)
-----------------
DNA (510bp)
protein (170aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. viciae WSM1455 RepID=J0BME2_RHILV
Uncharacterized protein {ECO:0000313|EMBL:KKP43763.1}; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWC1_33_20.;"
coiled-coil (db=Coil db_id=coil from=10 to=31 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=31 to=50)
gwc1_scaffold_1626_18
WS6_GWC1_33_20, WS6, Bacteria

Not on your lists

comp(14373..14654)
-----------------
DNA (282bp)
protein (94aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP43764.1}; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWC1_33_20.;"
seg (db=Seg db_id=seg from=62 to=79)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
gwc1_scaffold_1626_19
WS6_GWC1_33_20, WS6, Bacteria

Not on your lists

comp(14667..14939)
-----------------
DNA (273bp)
protein (91aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP43765.1}; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWC1_33_20.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=30)
gwc1_scaffold_1626_20
WS6_GWC1_33_20, WS6, Bacteria

Not on your lists

15208..17133
-----------------
DNA (1926bp)
protein (642aa)
Putative uncharacterized protein n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D620_METSW
Uncharacterized protein {ECO:0000313|EMBL:KKP43766.1}; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWC1_33_20.;"
hypothetical protein
seg (db=Seg db_id=seg from=21 to=31)
gwc1_scaffold_1626_21
WS6_GWC1_33_20, WS6, Bacteria

Not on your lists

17153..17866
-----------------
DNA (714bp)
protein (238aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP43767.1}; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWC1_33_20.;"
gwc1_scaffold_1626_22
WS6_GWC1_33_20, WS6, Bacteria

Not on your lists

17942..18142
-----------------
DNA (201bp)
protein (67aa)
Inorganic pyrophosphatase, inorganic pyrophosphatase {ECO:0000313|EMBL:KKP43768.1}; EC=3.6.1.1 {ECO:0000313|EMBL:KKP43768.1};; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candid
Inorganic pyrophosphatase n=1 Tax=Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 / 743B) RepID=D9SVX4_CLOC7
inorganic pyrophosphatase
(db=HMMPfam db_id=PF00719 from=14 to=55 evalue=7.4e-06 interpro_id=IPR008162 interpro_description=Inorganic pyrophosphatase GO=Molecular Function: magnesium ion binding (GO:0000287), Molecular Function: inorganic diphosphatase activity (GO:0004427), Cellular Component: cytoplasm (GO:0005737), Biological Process: phosphate-containing compound metabolic process (GO:0006796))
gwc1_scaffold_1626_23
WS6_GWC1_33_20, WS6, Bacteria

Not on your lists

18188..18754
-----------------
DNA (567bp)
protein (189aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP43769.1}; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWC1_33_20.;"
seg (db=Seg db_id=seg from=115 to=128)
gwc1_scaffold_1626_24
WS6_GWC1_33_20, WS6, Bacteria

Not on your lists

comp(18897..20171)
-----------------
DNA (1275bp)
protein (425aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP43770.1}; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWC1_33_20.;"
seg (db=Seg db_id=seg from=11 to=31)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=31)
gwc1_scaffold_1626_25
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

Not on your lists

20382..21377
-----------------
DNA (996bp)
protein (332aa)
ddlB; D-alanyl-alanine synthetase A (EC:6.3.2.4); K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] Tax=RIFOXYB1_FULL_WS6_33_15_curated
ddlB; D-alanyl-alanine synthetase A (EC:6.3.2.4)
D-alanine--D-alanine ligase n=2 Tax=Leptospira biflexa serovar Patoc RepID=DDL_LEPBA
seg (db=Seg db_id=seg from=16 to=30)
gwc1_scaffold_1626_26
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

Not on your lists

comp(21392..21691)
-----------------
DNA (300bp)
protein (100aa)
no description Tax=RIFOXYB1_FULL_WS6_33_15_curated
no description (db=Gene3D db_id=G3DSA:3.90.226.10 from=1 to=99 evalue=5.3e-09)
(db=HMMPfam db_id=PF00574 from=1 to=99 evalue=5.2e-08 interpro_id=IPR001907 interpro_description=Peptidase S14, ClpP GO=Molecular Function: serine-type endopeptidase activity (GO:0004252), Biological Process: proteolysis (GO:0006508))
ClpP/crotonase (db=superfamily db_id=SSF52096 from=1 to=99 evalue=7.2e-15)
gwc1_scaffold_1626_27
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

Not on your lists

21956..22162
-----------------
DNA (207bp)
protein (69aa)
transmembrane_regions Tax=RIFOXYB1_FULL_WS6_33_15_curated
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=28)
gwc1_scaffold_1626_28
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

Not on your lists

comp(22216..22626)
-----------------
DNA (411bp)
protein (137aa)
seg Tax=RIFOXYB1_FULL_WS6_33_15_curated
seg (db=Seg db_id=seg from=34 to=56)
coiled-coil (db=Coil db_id=coil from=102 to=123 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=34 to=56)
gwc1_scaffold_1626_29
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

Not on your lists

comp(22647..23183)
-----------------
DNA (537bp)
protein (179aa)
coiled-coil Tax=RIFOXYB1_FULL_WS6_33_15_curated
coiled-coil (db=Coil db_id=coil from=96 to=117 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
gwc1_scaffold_1626_30
WS6_GWC1_33_20, WS6, Bacteria

Not on your lists

23360..23539
-----------------
DNA (180bp)
protein (60aa)
Uncharacterized protein n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KQI9_HALH1
Uncharacterized protein {ECO:0000313|EMBL:KKP43776.1}; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWC1_33_20.;"
putative membrane protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
Displaying items 1-30 of 76 in total

View Taxonomy