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gwc1_scaffold_1940

Alias: WS6_GWC1_33_20_12

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwc1_scaffold_1940_1

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comp(3..722)
-----------------
DNA (720bp)
protein (240aa)
Translation initiation factor IF-2 n=1 Tax=Peptoniphilus indolicus ATCC 29427 RepID=G4D5P5_9FIRM
Translation initiation factor IF-2 {ECO:0000313|EMBL:KKP55152.1}; Flags: Fragment;; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6
translation initiation factor IF-2
seg (db=Seg db_id=seg from=88 to=99)
gwc1_scaffold_1940_2
WS6_GWC1_33_20, WS6, Bacteria

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comp(744..1964)
-----------------
DNA (1221bp)
protein (407aa)
Transcription termination factor NusA n=1 Tax=Peptoniphilus harei ACS-146-V-Sch2b RepID=E4KYI3_9FIRM rbh
NusA antitermination factor, N utilization substance protein A {ECO:0000313|EMBL:KKP43650.1}; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011
NusA antitermination factor
no description (db=HMMSmart db_id=SM00322 from=309 to=378 evalue=0.00088 interpro_id=IPR004087 interpro_description=K Homology GO=Molecular Function: RNA binding (GO:0003723))
gwc1_scaffold_1940_3
GWD1_WS6_35_594, WS6, Bacteria

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comp(2091..3176)
-----------------
DNA (1086bp)
protein (362aa)
Chaperone protein DnaJ n=1 Tax=Aerococcus urinae (strain ACS-120-V-Col10a) RepID=F2I4Z3_AERUA rbh
Chaperone protein DnaJ {ECO:0000313|EMBL:KKP81932.1}; TaxID=1619092 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWD1_35_594.;"
dnaJ; chaperone protein DnaJ
seg (db=Seg db_id=seg from=13 to=24)
gwc1_scaffold_1940_4
GWD1_WS6_35_594, WS6, Bacteria

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3252..4046
-----------------
DNA (795bp)
protein (265aa)
SrtC n=2 Tax=Lactococcus garvieae RepID=A4GX15_9LACT
SrtC {ECO:0000313|EMBL:KKP81931.1}; TaxID=1619092 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWD1_35_594.;"
sortase family protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
gwc1_scaffold_1940_5
GWD1_WS6_35_594, WS6, Bacteria

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4065..5381
-----------------
DNA (1317bp)
protein (439aa)
Putative sugar ABC transporter, periplasmic component n=1 Tax=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) RepID=C1D230_DEIDV
Uncharacterized protein {ECO:0000313|EMBL:KKP81930.1}; TaxID=1619092 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWD1_35_594.;"
family 1 extracellular solute-binding protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
gwc1_scaffold_1940_6
WS6_GWC1_33_20, WS6, Bacteria

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5400..7259
-----------------
DNA (1860bp)
protein (620aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP43654.1}; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWC1_33_20.;"
seg (db=Seg db_id=seg from=9 to=34)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
(db=HMMPfam db_id=PF10342 from=273 to=354 evalue=1.4e-06 interpro_id=IPR018466 interpro_description=Cell wall beta-glucan synthesis)
gwc1_scaffold_1940_7
WS6_GWF1_33_233, WS6, Bacteria

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7296..9044
-----------------
DNA (1749bp)
protein (583aa)
Alanine-tRNA ligase, alanyl-tRNA synthetase {ECO:0000313|EMBL:KKP45384.1}; EC=6.1.1.7 {ECO:0000313|EMBL:KKP45384.1};; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate divis
alaS2; alanine--tRNA ligase (EC:6.1.1.7)
Alanine--tRNA ligase n=1 Tax=Treponema phagedenis F0421 RepID=E7NSZ3_TREPH rbh
seg (db=Seg db_id=seg from=295 to=306)
gwc1_scaffold_1940_8

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9046..9498
-----------------
DNA (453bp)
protein (151aa)
Putative Holliday junction resolvase n=1 Tax=Halanaerobium saccharolyticum subsp. saccharolyticum DSM 6643 RepID=M5E1G0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KKP55159.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
Holliday junction resolvase-like protein
RNAse_H_YqgF: RNAse H-fold protein YqgF (db=HMMTigr db_id=TIGR00250 from=8 to=140 evalue=1.7e-16 interpro_id=IPR005227 interpro_description=Resolvase, holliday junction-type, YqgF-like GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310), Biological Process: response to DNA damage stimulus (GO:0006974), Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788))
gwc1_scaffold_1940_9
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

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9482..10480
-----------------
DNA (999bp)
protein (333aa)
UPI000288FE55 related cluster n=1 Tax=unknown RepID=UPI000288FE55
hypothetical protein; K07082 UPF0755 protein Tax=RIFOXYB1_FULL_WS6_33_15_curated
YceG family protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=22)
gwc1_scaffold_1940_10
WS6_GWC1_33_20, WS6, Bacteria

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10499..11932
-----------------
DNA (1434bp)
protein (478aa)
Transcriptional regulator LytR n=2 Tax=Brevibacillus laterosporus RepID=F7U2Q2_BRELA
Cell envelope-related transcriptional attenuator {ECO:0000313|EMBL:KKP43658.1}; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWC1_33_20.;"
cell envelope-related transcriptional attenuator
seg (db=Seg db_id=seg from=74 to=83)
gwc1_scaffold_1940_11
WS6_GWF1_33_233, WS6, Bacteria

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11937..12863
-----------------
DNA (927bp)
protein (309aa)
Polymerase III subunit delta, DNA polymerase III subunit delta protein {ECO:0000313|EMBL:KKP45380.1}; EC=2.7.7.7 {ECO:0000313|EMBL:KKP45380.1};; TaxID=1619096 species="Bacteria; candidate division WS6
YqeN n=14 Tax=Bacillus RepID=A7Z6X0_BACA2
holA; DNA polymerase III subunit delta
seg (db=Seg db_id=seg from=40 to=54)
gwc1_scaffold_1940_12
WS6_GWF1_33_233, WS6, Bacteria

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12947..14698
-----------------
DNA (1752bp)
protein (584aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP45379.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
seg (db=Seg db_id=seg from=14 to=31)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
B_ant_repeat: conserved repeat domain (db=HMMTigr db_id=TIGR01451 from=363 to=415 evalue=0.0013 interpro_id=IPR001434 interpro_description=Domain of unknown function DUF11 GO=Cellular Component: extrachromosomal circular DNA (GO:0005727))
gwc1_scaffold_1940_13
WS6_GWF1_33_233, WS6, Bacteria

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comp(14682..15095)
-----------------
DNA (414bp)
protein (138aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP45378.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
seg (db=Seg db_id=seg from=13 to=32)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=30)
Purple acid phosphatase, N-terminal domain (db=superfamily db_id=SSF49363 from=22 to=122 evalue=5.3e-07 interpro_id=IPR008963 interpro_description=Purple acid phosphatase-like, N-terminal GO=Molecular Function: acid phosphatase activity (GO:0003993), Molecular Function: metal ion binding (GO:0046872))
gwc1_scaffold_1940_14
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

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comp(15079..15318)
-----------------
DNA (240bp)
protein (80aa)
Cadherin-like Tax=RIFOXYB1_FULL_WS6_33_15_curated
Cadherin-like (db=superfamily db_id=SSF49313 from=5 to=78 evalue=7.2e-08 interpro_id=IPR015919 interpro_description=Cadherin-like GO=Molecular Function: calcium ion binding (GO:0005509), Cellular Component: membrane (GO:0016020))
gwc1_scaffold_1940_15

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15384..15731
-----------------
DNA (348bp)
protein (116aa)
30S ribosomal protein S20 n=1 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=RS20_HALOH
30S ribosomal protein S20 {ECO:0000313|EMBL:KKP55166.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
30S ribosomal protein S20
(db=HMMPfam db_id=PF01649 from=19 to=102 evalue=1.3e-16 interpro_id=IPR002583 interpro_description=Ribosomal protein S20 GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
gwc1_scaffold_1940_16
GWD1_WS6_35_594, WS6, Bacteria

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15703..16251
-----------------
DNA (549bp)
protein (183aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP82053.1}; TaxID=1619092 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWD1_35_594.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
gwc1_scaffold_1940_17

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16253..16807
-----------------
DNA (555bp)
protein (185aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55168.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
seg (db=Seg db_id=seg from=16 to=29)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
gwc1_scaffold_1940_18

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16859..18682
-----------------
DNA (1824bp)
protein (608aa)
Elongation factor 4 n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9S2N8_THEOJ rbh
Elongation factor 4 {ECO:0000313|EMBL:KKP55169.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
GTP-binding protein LepA
seg (db=Seg db_id=seg from=573 to=589)
gwc1_scaffold_1940_19
WS6_GWF1_33_233, WS6, Bacteria

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18682..19755
-----------------
DNA (1074bp)
protein (358aa)
DNA replication and repair protein RecF n=1 Tax=Halobacteroides halobius (strain ATCC 35273 / DSM 5150 / MD-1) RepID=L0K426_HALHC
Recombination protein F, DNA replication and repair protein RecF {ECO:0000313|EMBL:KKP45372.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW20
recF protein
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=1 to=322 evalue=2.3e-25)
gwc1_scaffold_1940_20

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19807..20631
-----------------
DNA (825bp)
protein (275aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55171.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
seg (db=Seg db_id=seg from=14 to=26)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
gwc1_scaffold_1940_21
WS6_GWF1_33_233, WS6, Bacteria

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20631..21293
-----------------
DNA (663bp)
protein (221aa)
Putative uncharacterized protein n=2 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KS15_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKP45370.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
hypothetical protein
coiled-coil (db=Coil db_id=coil from=143 to=171 evalue=NA)
gwc1_scaffold_1940_22
WS6_GWC1_33_20, WS6, Bacteria

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21256..23646
-----------------
DNA (2391bp)
protein (797aa)
Type IV secretory pathway VirB4 components-like protein n=3 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KS14_9BACT rbh
Type IV secretory pathway VirB4 protein-like protein {ECO:0000313|EMBL:KKP43670.1}; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWC1_33_2
hypothetical protein
seg (db=Seg db_id=seg from=527 to=538)
gwc1_scaffold_1940_23
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

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23615..23812
-----------------
DNA (198bp)
protein (66aa)
id=5100190 Tax=RIFOXYB1_FULL_WS6_33_15_curated
gwc1_scaffold_1940_24
WS6_GWC1_33_20, WS6, Bacteria

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comp(23809..24957)
-----------------
DNA (1149bp)
protein (383aa)
ATP-dependent protease La, ATP-dependent Lon protease {ECO:0000313|EMBL:KKP43672.1}; EC=3.4.21.53 {ECO:0000313|EMBL:KKP43672.1};; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="can
Lon protease n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CBY4_THET1
hypothetical protein
seg (db=Seg db_id=seg from=267 to=278)
gwc1_scaffold_1940_25
WS6_GWC1_33_20, WS6, Bacteria

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comp(24999..26288)
-----------------
DNA (1290bp)
protein (430aa)
SufS subfamily cysteine desulfurase, cysteine desulfurase / selenocysteine lyase {ECO:0000313|EMBL:KKP43673.1}; EC=2.8.1.7 {ECO:0000313|EMBL:KKP43673.1};; TaxID=1619089 species="Bacteria; candidate di
Cysteine desulfurase n=2 Tax=uncultured candidate division OP1 bacterium RepID=H5SHY4_9BACT rbh
SufS subfamily cysteine desulfurase
seg (db=Seg db_id=seg from=158 to=176)
gwc1_scaffold_1940_26

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comp(26306..26866)
-----------------
DNA (561bp)
protein (187aa)
dcd; deoxycytidine triphosphate deaminase (EC:3.5.4.13)
Deoxycytidine triphosphate deaminase n=3 Tax=Corynebacterium RepID=DCD_CORJK
Deoxycytidine triphosphate deaminase {ECO:0000313|EMBL:KKP55177.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
(db=HMMPfam db_id=PF00692 from=72 to=174 evalue=2.1e-09 interpro_id=IPR008180 interpro_description=DeoxyUTP pyrophosphatase GO=Molecular Function: hydrolase activity (GO:0016787), Biological Process: dUTP metabolic process (GO:0046080))
gwc1_scaffold_1940_27

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comp(26884..28479)
-----------------
DNA (1596bp)
protein (532aa)
Thymidylate synthase complementing protein n=1 Tax=Oscillatoriales cyanobacterium JSC-12 RepID=K8GNT5_9CYAN rbh
Thymidylate synthase complementing protein {ECO:0000313|EMBL:KKP55178.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
seg (db=Seg db_id=seg from=344 to=349)
coiled-coil (db=Coil db_id=coil from=413 to=434 evalue=NA)
gwc1_scaffold_1940_28
WS6_GWF1_33_233, WS6, Bacteria

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comp(28508..29611)
-----------------
DNA (1104bp)
protein (368aa)
Glycine hydroxymethyltransferase, glycine hydroxymethyltransferase {ECO:0000313|EMBL:KKP45363.1}; EC=2.1.2.1 {ECO:0000313|EMBL:KKP45363.1};; TaxID=1619096 species="Bacteria; candidate division WS6.;"
glycine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase n=1 Tax=Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51) RepID=D6Y377_THEBD rbh
SHMT (db=PatternScan db_id=PS00096 from=171 to=187 evalue=0.0 interpro_id=IPR019798 interpro_description=Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO=Molecular Function: glycine hydroxymethyltransferase activity (GO:0004372), Biological Process: glycine metabolic process (GO:0006544), Biological Process: L-serine metabolic process (GO:0006563), Molecular Function: pyridoxal phosphate binding (GO:0030170))
Displaying 28 items

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