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gwc1_scaffold_2496

Alias: WS6_GWC1_33_20_14

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwc1_scaffold_2496_1
WS6_GWC1_33_20, WS6, Bacteria

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3..1577
-----------------
DNA (1575bp)
protein (525aa)
DNA mismatch repair protein MutS n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AWP3_9CLOT rbh
Mismatch repair protein MutS, DNA mismatch repair protein MutS protein {ECO:0000313|EMBL:KKP43524.1}; Flags: Fragment;; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate div
DNA mismatch repair protein MutS
coiled-coil (db=Coil db_id=coil from=189 to=210 evalue=NA)
gwc1_scaffold_2496_2
WS6_GWC1_33_20, WS6, Bacteria

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comp(1898..3190)
-----------------
DNA (1293bp)
protein (431aa)
Histidyl-tRNA synthetase, histidyl-tRNA synthetase {ECO:0000313|EMBL:KKP43525.1}; EC=6.1.1.21 {ECO:0000313|EMBL:KKP43525.1};; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candida
Histidine--tRNA ligase n=6 Tax=Leptospira RepID=SYH_LEPBA rbh
hisS; histidyl-tRNA synthetase
(db=HMMPfam db_id=PF03129 from=342 to=429 evalue=1.6e-14 interpro_id=IPR004154 interpro_description=Anticodon-binding)
gwc1_scaffold_2496_3
WS6_GWC1_33_20, WS6, Bacteria

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3283..5976
-----------------
DNA (2694bp)
protein (898aa)
Penicillin-binding protein, 1A family n=1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9B6Z4_HERA2 rbh
1A family penicillin-binding protein {ECO:0000313|EMBL:KKP43526.1}; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWC1_33_20.;"
hypothetical protein
seg (db=Seg db_id=seg from=1 to=20)
gwc1_scaffold_2496_4
WS6_GWF1_33_233, WS6, Bacteria

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comp(5981..8464)
-----------------
DNA (2484bp)
protein (828aa)
Phenylalanyl-tRNA synthetase subunit beta, phenylalanyl-tRNA synthetase beta chain {ECO:0000313|EMBL:KKP45128.1}; EC=6.1.1.20 {ECO:0000313|EMBL:KKP45128.1};; TaxID=1619096 species="Bacteria; candidate
Phenylalanine--tRNA ligase beta subunit n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KTJ4_9BACT rbh
Phenylalanine-tRNA ligase beta subunit
seg (db=Seg db_id=seg from=688 to=705)
gwc1_scaffold_2496_5
WS6_GWF1_33_233, WS6, Bacteria

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comp(8466..9494)
-----------------
DNA (1029bp)
protein (343aa)
Phenylalanyl-tRNA synthetase subunit alpha, phenylalanyl-tRNA synthetase alpha chain {ECO:0000313|EMBL:KKP45127.1}; EC=6.1.1.20 {ECO:0000313|EMBL:KKP45127.1};; TaxID=1619096 species="Bacteria; candida
pheS; Phenylalanine--tRNA ligase alpha subunit (EC:6.1.1.20)
Phenylalanine--tRNA ligase alpha subunit n=3 Tax=Clostridium RepID=B8I1X0_CLOCE
seg (db=Seg db_id=seg from=235 to=245)
gwc1_scaffold_2496_6
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

Not on your lists


comp(9606..9944)
-----------------
DNA (339bp)
protein (113aa)
50S ribosomal protein L20 n=1 Tax=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) RepID=RL20_NATTJ
LSU ribosomal protein L20P; K02887 large subunit ribosomal protein L20 Tax=RIFOXYB1_FULL_WS6_33_15_curated
LSU ribosomal protein L20P
(db=HMMPfam db_id=PF00453 from=1 to=106 evalue=1.9e-39 interpro_id=IPR005813 interpro_description=Ribosomal protein L20 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
gwc1_scaffold_2496_7
GWD1_WS6_35_594, WS6, Bacteria

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comp(10036..10689)
-----------------
DNA (654bp)
protein (218aa)
Translation initiation factor 3 n=1 Tax=human gut metagenome RepID=K1RRG3_9ZZZZ
Translation initiation factor 3 {ECO:0000313|EMBL:KKP81706.1}; TaxID=1619092 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWD1_35_594.;"
bacterial translation initiation factor 3 (bIF-3)
seg (db=Seg db_id=seg from=80 to=92)
gwc1_scaffold_2496_8
GWD1_WS6_35_594, WS6, Bacteria

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comp(10713..12473)
-----------------
DNA (1761bp)
protein (587aa)
Threonine--tRNA ligase n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CDN7_THET1 rbh
Threonine-tRNA ligase {ECO:0000313|EMBL:KKP81707.1}; TaxID=1619092 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWD1_35_594.;"
threonyl-tRNA synthetase
seg (db=Seg db_id=seg from=98 to=109)
gwc1_scaffold_2496_9
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(12633..13367)
-----------------
DNA (735bp)
protein (245aa)
RNA methyltransferase, RsmD family n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C9D1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KKP45123.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
putative methyltransferase
RNA M5U METHYLTRANSFERASE (db=HMMPanther db_id=PTHR11061:SF2 from=78 to=168 evalue=0.00019)
gwc1_scaffold_2496_10
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(13381..14868)
-----------------
DNA (1488bp)
protein (496aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP45122.1}; Flags: Fragment;; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
seg (db=Seg db_id=seg from=62 to=75)
gwc1_scaffold_2496_11
WS6_GWC1_33_20, WS6, Bacteria

Not on your lists

comp(14958..16007)
-----------------
DNA (1050bp)
protein (350aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP43534.1}; Flags: Fragment;; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWC1_33_20.;"
Displaying 11 items

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