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gwc1_scaffold_4888

Alias: WS6_GWC1_33_20_19

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwc1_scaffold_4888_1
WS6_GWF1_33_233, WS6, Bacteria

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comp(2..502)
-----------------
DNA (501bp)
protein (167aa)
Glycoside hydrolase, beta-N-acetylhexosaminidase {ECO:0000313|EMBL:KKP45693.1}; EC=3.2.1.52 {ECO:0000313|EMBL:KKP45693.1};; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate
Beta-N-acetylhexosaminidase n=1 Tax=Bacillus sp. m3-13 RepID=UPI0001E896DE
hypothetical protein
seg (db=Seg db_id=seg from=101 to=117)
gwc1_scaffold_4888_2
WS6_GWF1_33_233, WS6, Bacteria

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643..2082
-----------------
DNA (1440bp)
protein (480aa)
L-glutamine synthetase, glutamine synthetase {ECO:0000313|EMBL:KKP45694.1}; EC=6.3.1.2 {ECO:0000313|EMBL:KKP45694.1};; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate divi
L-glutamine synthetase (EC:6.3.1.2)
Glutamine synthetase n=3 Tax=mine drainage metagenome RepID=E6PCQ0_9ZZZZ rbh
GLNA_ATP (db=PatternScan db_id=PS00181 from=272 to=287 evalue=0.0 interpro_id=IPR008146 interpro_description=Glutamine synthetase, catalytic domain GO=Molecular Function: glutamate-ammonia ligase activity (GO:0004356), Biological Process: nitrogen compound metabolic process (GO:0006807))
gwc1_scaffold_4888_3
WS6_GWC1_33_20, WS6, Bacteria

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comp(2113..2550)
-----------------
DNA (438bp)
protein (146aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP43261.1}; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWC1_33_20.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=25)
(db=HMMPfam db_id=PF09335 from=64 to=140 evalue=5.5e-08 interpro_id=IPR015414 interpro_description=SNARE associated Golgi protein)
gwc1_scaffold_4888_4
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

2720..3913
-----------------
DNA (1194bp)
protein (398aa)
DEAD/DEAH RNA helicase, ATP-dependent RNA helicase RhlE {ECO:0000313|EMBL:KKP45696.1}; EC=3.6.1.- {ECO:0000313|EMBL:KKP45696.1};; EC=3.6.4.13 {ECO:0000313|EMBL:KKP45696.1};; TaxID=1619096 species="Bac
ATP-dependent RNA helicase RhlE n=1 Tax=Algoriphagus sp. PR1 RepID=A3I1F5_9BACT rbh
hypothetical protein
seg (db=Seg db_id=seg from=9 to=33)
gwc1_scaffold_4888_5
WS6_GWC1_33_20, WS6, Bacteria

Not on your lists

comp(4312..4728)
-----------------
DNA (417bp)
protein (139aa)
Protein-L-isoaspartate O-methyltransferase, protein-L-isoaspartate(D-aspartate) O-methyltransferase {ECO:0000313|EMBL:KKP43263.1}; EC=2.1.1.77 {ECO:0000313|EMBL:KKP43263.1};; TaxID=1619089 species="Ba
protein-L-isoaspartate O-methyltransferase (EC:2.1.1.77)
Protein-L-isoaspartate O-methyltransferase n=1 Tax=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) RepID=PIMT_DICTD
(db=HMMPfam db_id=PF01135 from=1 to=138 evalue=1.8e-39 interpro_id=IPR000682 interpro_description=Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO=Molecular Function: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity (GO:0004719), Biological Process: protein modification process (GO:0006464))
gwc1_scaffold_4888_6

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5160..5681
-----------------
DNA (522bp)
protein (174aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55258.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
seg (db=Seg db_id=seg from=8 to=21)
gwc1_scaffold_4888_7

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5745..6359
-----------------
DNA (615bp)
protein (205aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55259.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
seg (db=Seg db_id=seg from=5 to=19)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
gwc1_scaffold_4888_8

Not on your lists

6381..6989
-----------------
DNA (609bp)
protein (203aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55260.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=11 to=33)
EF_HAND_1 (db=PatternScan db_id=PS00018 from=138 to=150 evalue=0.0 interpro_id=IPR018247 interpro_description=EF-Hand 1, calcium-binding site)
gwc1_scaffold_4888_9
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

7118..8092
-----------------
DNA (975bp)
protein (325aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP45701.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
seg (db=Seg db_id=seg from=12 to=23)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
Carbohydrate-binding domain (db=superfamily db_id=SSF49384 from=112 to=254 evalue=1.0e-07 interpro_id=IPR008965 interpro_description=Carbohydrate-binding domain GO=Molecular Function: carbohydrate binding (GO:0030246))
gwc1_scaffold_4888_10
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

Not on your lists

comp(8093..9625)
-----------------
DNA (1533bp)
protein (511aa)
Uncharacterized protein n=1 Tax=Flavobacterium indicum (strain DSM 17447 / CIP 109464 / GPTSA100-9) RepID=H8XPP8_FLAIG
hypothetical protein Tax=RIFOXYB1_FULL_WS6_33_15_curated
hypothetical protein
seg (db=Seg db_id=seg from=8 to=24)
gwc1_scaffold_4888_11

Not on your lists

9711..10109
-----------------
DNA (399bp)
protein (133aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55263.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
gwc1_scaffold_4888_12
GWD1_WS6_35_594, WS6, Bacteria

Not on your lists

comp(10103..10546)
-----------------
DNA (444bp)
protein (148aa)
Polysaccharide deacetylase n=1 Tax=Thermodesulfobium narugense DSM 14796 RepID=M1E4J2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KKP81773.1}; TaxID=1619092 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWD1_35_594.;"
polysaccharide deacetylase
seg (db=Seg db_id=seg from=29 to=40)
Displaying 12 items

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