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gwe1_scaffold_446

Alias: GWE1_WS6_33_547_1

Search features with annotation key words

Displaying items 1-30 of 92 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwe1_scaffold_446_1
WS6_GWF1_33_233, WS6, Bacteria

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1..150
DNA (150bp) protein (50aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP46048.1}; Flags: Fragment;; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
hypothetical protein
seg (db=Seg db_id=seg from=9 to=19)
gwe1_scaffold_446_2
GWD1_WS6_35_594, WS6, Bacteria

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235..627
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Desulfosporosinus orientis (strain ATCC 19365 / DSM 765 / NCIMB 8382 / VKM B-1628) RepID=G7W7Q9_DESOD
Uncharacterized protein {ECO:0000313|EMBL:KKP82331.1}; TaxID=1619092 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWD1_35_594.;"
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=36 to=55)
gwe1_scaffold_446_3

Not on your lists

670..807
DNA (138bp) protein (46aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55442.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=3 to=20)
seg (db=Seg db_id=seg from=3 to=14)
gwe1_scaffold_446_4

Not on your lists

846..989
DNA (144bp) protein (48aa)
Uncharacterized protein n=3 Tax=Methylobacterium RepID=B1M377_METRJ
Uncharacterized protein {ECO:0000313|EMBL:KKP55443.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
protein of unassigned function
transmembrane_regions (db=TMHMM db_id=tmhmm from=2 to=24)
gwe1_scaffold_446_5

Not on your lists

1035..1259
DNA (225bp) protein (75aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55444.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
gwe1_scaffold_446_6

Not on your lists

comp(1264..1797)
DNA (534bp) protein (178aa)
Uncharacterized protein n=4 Tax=Clostridium butyricum RepID=M8JMX2_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KKP55445.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
gwe1_scaffold_446_7
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(1805..2764)
DNA (960bp) protein (320aa)
tRNA-dihydrouridine synthase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T2H1_PALPW
Dihydrouridine synthase dus {ECO:0000313|EMBL:KKP46042.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
dihydrouridine synthase dus
UPF0034 (db=PatternScan db_id=PS01136 from=96 to=114 evalue=0.0 interpro_id=IPR018517 interpro_description=tRNA-dihydrouridine synthase, conserved site GO=Biological Process: tRNA processing (GO:0008033), Molecular Function: tRNA dihydrouridine synthase activity (GO:0017150), Molecular Function: flavin adenine dinucleotide binding (GO:0050660), Biological Process: oxidation-reduction process (GO:0055114))
gwe1_scaffold_446_8
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

Not on your lists

2881..3285
DNA (405bp) protein (135aa)
transmembrane_regions Tax=RIFOXYB1_FULL_WS6_33_15_curated
transmembrane_regions (db=TMHMM db_id=tmhmm from=79 to=101)
gwe1_scaffold_446_9

Not on your lists

3285..5999
DNA (2715bp) protein (905aa)
ATPase with chaperone activity, ATP-binding subunit n=1 Tax=Fervidobacterium pennivorans (strain DSM 9078 / Ven5) RepID=H9UA35_FERPD rbh
ATPase with chaperone activity, ATP-binding subunit {ECO:0000313|EMBL:KKP55448.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.
hypothetical protein
coiled-coil (db=Coil db_id=coil from=512 to=533 evalue=NA)
gwe1_scaffold_446_10
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

Not on your lists


6059..6244
DNA (186bp) protein (62aa)
50S ribosomal protein L32 n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F4A044_MAHA5
50S ribosomal protein L32; K02911 large subunit ribosomal protein L32 Tax=RIFOXYB1_FULL_WS6_33_15_curated
50S ribosomal protein L32
Zn-binding ribosomal proteins (db=superfamily db_id=SSF57829 from=3 to=58 evalue=3.6e-17 interpro_id=IPR011332 interpro_description=Ribosomal protein, zinc-binding domain GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
gwe1_scaffold_446_11
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

6262..6702
DNA (441bp) protein (147aa)
N utilization substance protein B homolog n=1 Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8N4X5_ANATU
Antitermination protein NusB, N utilization substance protein B {ECO:0000313|EMBL:KKP46038.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW201
hypothetical protein
no description (db=Gene3D db_id=G3DSA:1.10.940.10 from=8 to=137 evalue=3.8e-29 interpro_id=IPR006027 interpro_description=NusB/RsmB/TIM44 GO=Molecular Function: RNA binding (GO:0003723), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
gwe1_scaffold_446_12
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

Not on your lists

6695..7390
DNA (696bp) protein (232aa)
ribonuclease III (EC:3.1.26.3); K03685 ribonuclease III [EC:3.1.26.3] Tax=RIFOXYB1_FULL_WS6_33_15_curated
Ribonuclease 3 n=2 Tax=Anaerostipes RepID=B0M9W6_9FIRM
Ribonuclease 3
RNASE_3_1 (db=PatternScan db_id=PS00517 from=42 to=50 evalue=0.0 interpro_id=IPR000999 interpro_description=Ribonuclease III GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: ribonuclease III activity (GO:0004525), Biological Process: RNA processing (GO:0006396))
gwe1_scaffold_446_13

Not on your lists


7430..7729
DNA (300bp) protein (100aa)
30S ribosomal protein S16 n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHL7_9FIRM
30S ribosomal protein S16 {ECO:0000313|EMBL:KKP55452.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
30S ribosomal protein S16
RIBOSOMAL_S16 (db=PatternScan db_id=PS00732 from=2 to=11 evalue=0.0 interpro_id=IPR020592 interpro_description=Ribosomal protein S16, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
gwe1_scaffold_446_14

Not on your lists

7830..8138
DNA (309bp) protein (103aa)
UPF0109 protein Cwoe_3681 n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F1D5_CONWI
Uncharacterized protein {ECO:0000313|EMBL:KKP55453.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
(db=HMMPfam db_id=PF00013 from=35 to=61 evalue=5.6e-05 interpro_id=IPR018111 interpro_description=K Homology, type 1, subgroup GO=Molecular Function: RNA binding (GO:0003723))
gwe1_scaffold_446_15

Not on your lists

comp(8169..8861)
DNA (693bp) protein (231aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55454.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=32 to=54)
seg (db=Seg db_id=seg from=28 to=46)
gwe1_scaffold_446_16

Not on your lists

comp(8864..9571)
DNA (708bp) protein (236aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55455.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=78 to=100)
seg (db=Seg db_id=seg from=79 to=94)
gwe1_scaffold_446_17

Not on your lists

comp(9573..10604)
DNA (1032bp) protein (344aa)
Type IV pilus assembly protein PilM n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KSX7_9BACT
Type IV pilus assembly protein PilM {ECO:0000313|EMBL:KKP55456.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
hypothetical protein
(db=HMMPfam db_id=PF02491 from=182 to=238 evalue=1.0e-07 interpro_id=IPR003494 interpro_description=Cell division protein FtsA domain GO=Biological Process: cell cycle (GO:0007049))
gwe1_scaffold_446_18
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(10672..13287)
DNA (2616bp) protein (872aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP46031.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
seg (db=Seg db_id=seg from=688 to=701)
gwe1_scaffold_446_19
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(13280..14575)
DNA (1296bp) protein (432aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP46030.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
coiled-coil (db=Coil db_id=coil from=29 to=50 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=6 to=29)
gwe1_scaffold_446_20
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(14627..17131)
DNA (2505bp) protein (835aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP46029.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=10 to=24)
gwe1_scaffold_446_21
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(17185..17763)
DNA (579bp) protein (193aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP46028.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
seg (db=Seg db_id=seg from=14 to=28)
gwe1_scaffold_446_22
GWD1_WS6_35_594, WS6, Bacteria

Not on your lists

comp(17792..17908)
DNA (117bp) protein (39aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP82351.1}; TaxID=1619092 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWD1_35_594.;"
gwe1_scaffold_446_23

Not on your lists

comp(17905..18138)
DNA (234bp) protein (78aa)
Response regulator receiver modulated metal dependent phosphohydrolase n=1 Tax=Calditerrivibrio nitroreducens (strain DSM 19672 / NBRC 101217 / Yu37-1) RepID=E4TFH3_CALNY
Response regulator {ECO:0000313|EMBL:KKP55461.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
response regulator receiver modulated metal dependent phosphohydrolase
(db=HMMPfam db_id=PF00072 from=7 to=74 evalue=1.0e-13 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
gwe1_scaffold_446_24
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(18158..19102)
DNA (945bp) protein (315aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP46026.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
seg (db=Seg db_id=seg from=8 to=21)
gwe1_scaffold_446_25
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(19138..19839)
DNA (702bp) protein (234aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP46025.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
IV_pilin_GFxxxE: prepilin-type N-term (db=HMMTigr db_id=TIGR02532 from=8 to=31 evalue=0.0046 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
seg (db=Seg db_id=seg from=17 to=29)
gwe1_scaffold_446_26

Not on your lists

comp(19836..20357)
DNA (522bp) protein (174aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55464.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
seg (db=Seg db_id=seg from=70 to=80)
gwe1_scaffold_446_27

Not on your lists

comp(20354..21202)
DNA (849bp) protein (283aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55465.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
IV_pilin_GFxxxE: prepilin-type N-term (db=HMMTigr db_id=TIGR02532 from=8 to=31 evalue=0.0002 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
coiled-coil (db=Coil db_id=coil from=47 to=68 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
gwe1_scaffold_446_28
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(21292..22053)
DNA (762bp) protein (254aa)
Type 4 prepilin-like proteins leader peptide-processing enzyme n=1 Tax=Clostridium ultunense Esp RepID=M1YZF7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KKP46022.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
gwe1_scaffold_446_29
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(22129..22683)
DNA (555bp) protein (185aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP46021.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
PROKAR_NTER_METHYL (db=PatternScan db_id=PS00409 from=6 to=26 evalue=0.0 interpro_id=IPR001120 interpro_description=Prokaryotic N-terminal methylation site)
IV_pilin_GFxxxE: prepilin-type N-term (db=HMMTigr db_id=TIGR02532 from=5 to=28 evalue=0.0044 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
gwe1_scaffold_446_30

Not on your lists

comp(22723..23964)
DNA (1242bp) protein (414aa)
Type IV pilus inner membrane protein PilC n=2 Tax=Geobacter metallireducens RepID=Q39VU5_GEOMG rbh
Type II secretion system F domain protein {ECO:0000313|EMBL:KKP55468.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
type II secretion system protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=169 to=191)
Displaying items 1-30 of 92 in total

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