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gwe1_scaffold_652

Alias: GWE1_WS6_33_547_6

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwe1_scaffold_652_1
WS6_GWC1_33_20, WS6, Bacteria

Not on your lists

comp(1..420)
DNA (420bp) protein (140aa)
Recombination protein RecR n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9KXL7_THERP
Recombination protein RecR, recombination protein RecR {ECO:0000313|EMBL:KKP44700.1}; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWC1_33
recR; recombination protein RecR
RECR (db=PatternScan db_id=PS01300 from=58 to=79 evalue=0.0 interpro_id=IPR015967 interpro_description=Recombination protein RecR, conserved site GO=Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310))
gwe1_scaffold_652_2
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

Not on your lists

comp(422..673)
DNA (252bp) protein (84aa)
seg Tax=RIFOXYB1_FULL_WS6_33_15_curated
seg (db=Seg db_id=seg from=51 to=61)
YbaB-like (db=superfamily db_id=SSF82607 from=4 to=58 evalue=2.1e-09 interpro_id=IPR004401 interpro_description=Uncharacterised protein family UPF0133)
no description (db=Gene3D db_id=G3DSA:3.30.1310.10 from=11 to=61 evalue=2.6e-06 interpro_id=IPR004401 interpro_description=Uncharacterised protein family UPF0133)
gwe1_scaffold_652_3
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(729..2309)
DNA (1581bp) protein (527aa)
Polymerase III subunit gamma and tau, DNA polymerase III subunit gamma/tau protein {ECO:0000313|EMBL:KKP45632.1}; EC=2.7.7.7 {ECO:0000313|EMBL:KKP45632.1};; TaxID=1619096 species="Bacteria; candidate
DNA polymerase III subunits gamma and tau (EC:2.7.7.7)
DNA polymerase III, subunits gamma and tau n=1 Tax=Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM B-1644) RepID=C8W2P9_DESAS rbh
seg (db=Seg db_id=seg from=496 to=508)
gwe1_scaffold_652_4
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(2370..4778)
DNA (2409bp) protein (803aa)
Transcription-repair coupling factor, transcription-repair coupling factor (Superfamily II helicase) {ECO:0000313|EMBL:KKP45633.1}; EC=3.6.4.- {ECO:0000313|EMBL:KKP45633.1};; TaxID=1619096 species="Ba
Transcription-repair coupling factor n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CUJ7_9CLOT rbh
transcription-repair coupling factor
seg (db=Seg db_id=seg from=710 to=721)
gwe1_scaffold_652_5
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

4820..6034
DNA (1215bp) protein (405aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP45634.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
seg (db=Seg db_id=seg from=60 to=89)
transmembrane_regions (db=TMHMM db_id=tmhmm from=30 to=52)
(db=HMMPfam db_id=PF04307 from=38 to=131 evalue=2.7e-07 interpro_id=IPR007404 interpro_description=Protein of unknown function DUF457, transmembrane)
gwe1_scaffold_652_6
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(6012..6569)
DNA (558bp) protein (186aa)
Peptidyl-tRNA hydrolase, peptidyl-tRNA hydrolase, PTH1 family {ECO:0000313|EMBL:KKP45635.1}; EC=3.1.1.29 {ECO:0000313|EMBL:KKP45635.1};; TaxID=1619096 species="Bacteria; candidate division WS6.;" sour
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CBU6_THET1
PEPTIDYL-TRNA HYDROLASE (db=HMMPanther db_id=PTHR17224 from=1 to=184 evalue=1.7e-39 interpro_id=IPR001328 interpro_description=Peptidyl-tRNA hydrolase GO=Molecular Function: aminoacyl-tRNA hydrolase activity (GO:0004045))
gwe1_scaffold_652_7
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(6560..7006)
DNA (447bp) protein (149aa)
Endoribonuclease YbeY n=1 Tax=Thermotoga thermarum DSM 5069 RepID=F7YTS9_9THEM
Uncharacterized protein {ECO:0000313|EMBL:KKP45636.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
hypothetical protein
UPF0054 (db=PatternScan db_id=PS01306 from=110 to=120 evalue=0.0 interpro_id=IPR020549 interpro_description=Uncharacterised protein family UPF0054, conserved site GO=Molecular Function: metal ion binding (GO:0046872))
gwe1_scaffold_652_8
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(7006..7449)
DNA (444bp) protein (148aa)
Uncharacterized protein yqeY n=2 Tax=Brevibacillus laterosporus RepID=H0UC76_BRELA
Uncharacterized protein {ECO:0000313|EMBL:KKP45637.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
glutamyl-tRNA(Gln) amidotransferase subunit E
coiled-coil (db=Coil db_id=coil from=50 to=74 evalue=NA)
gwe1_scaffold_652_9

Not on your lists

comp(7470..7670)
DNA (201bp) protein (67aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP54804.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
seg (db=Seg db_id=seg from=47 to=66)
(db=HMMPfam db_id=PF01165 from=2 to=56 evalue=3.7e-11 interpro_id=IPR001911 interpro_description=Ribosomal protein S21 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
S21p: ribosomal protein S21 (db=HMMTigr db_id=TIGR00030 from=1 to=60 evalue=7.5e-08 interpro_id=IPR001911 interpro_description=Ribosomal protein S21 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
gwe1_scaffold_652_10

Not on your lists

comp(7716..9674)
DNA (1959bp) protein (653aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP54805.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
B_ant_repeat: conserved repeat domain (db=HMMTigr db_id=TIGR01451 from=336 to=390 evalue=0.22 interpro_id=IPR001434 interpro_description=Domain of unknown function DUF11 GO=Cellular Component: extrachromosomal circular DNA (GO:0005727))
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=29)
seg (db=Seg db_id=seg from=251 to=263)
gwe1_scaffold_652_11

Not on your lists

comp(9714..10853)
DNA (1140bp) protein (380aa)
Membrane-associated zinc metalloprotease n=1 Tax=Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1) RepID=F4LU77_TEPAE
Membrane-associated zinc metalloprotease {ECO:0000313|EMBL:KKP54806.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
gwe1_scaffold_652_12
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(10882..11427)
DNA (546bp) protein (182aa)
Ribosome-recycling factor n=1 Tax=Bifidobacterium asteroides (strain PRL2011) RepID=K4IL31_BIFAP
Ribosome recycling factor, ribosome recycling factor {ECO:0000313|EMBL:KKP45641.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_2
hypothetical protein
coiled-coil (db=Coil db_id=coil from=111 to=132 evalue=NA)
gwe1_scaffold_652_13
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(11482..13788)
DNA (2307bp) protein (769aa)
Two-component hybrid sensor and regulator, two-component system, sensor histidine kinase and response regulator {ECO:0000313|EMBL:KKP45642.1}; EC=2.7.13.3 {ECO:0000313|EMBL:KKP45642.1};; TaxID=1619096
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QL92_9CLOT
Sensor protein resE
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=22)
gwe1_scaffold_652_14

Not on your lists

comp(13805..14629)
DNA (825bp) protein (275aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP54809.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
coiled-coil (db=Coil db_id=coil from=237 to=258 evalue=NA)
gwe1_scaffold_652_15
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(14637..15644)
DNA (1008bp) protein (336aa)
ThiF family protein n=1 Tax=Streptomyces turgidiscabies Car8 RepID=L7FH73_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:KKP45644.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
ThiF family protein
seg (db=Seg db_id=seg from=11 to=22)
gwe1_scaffold_652_16
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(15760..16473)
DNA (714bp) protein (238aa)
Elongation factor Ts n=1 Tax=Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT) RepID=EFTS_COPPD
Translation elongation factor Ts, elongation factor Ts {ECO:0000313|EMBL:KKP45645.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33
tsf; translation elongation factor Ts
ELONGATION FACTOR TS (db=HMMPanther db_id=PTHR11741 from=45 to=236 evalue=1.1e-24 interpro_id=IPR001816 interpro_description=Translation elongation factor EFTs/EF1B GO=Molecular Function: translation elongation factor activity (GO:0003746), Cellular Component: intracellular (GO:0005622), Biological Process: translational elongation (GO:0006414))
gwe1_scaffold_652_17

Not on your lists


comp(16492..17643)
DNA (1152bp) protein (384aa)
30S ribosomal protein S2 n=1 Tax=uncultured bacterium W5-47b RepID=H9BX54_9BACT
30S ribosomal protein S2 {ECO:0000313|EMBL:KKP54812.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
rpsB; 30S ribosomal protein S2
RIBOSOMAL_S2_1 (db=PatternScan db_id=PS00962 from=30 to=41 evalue=0.0 interpro_id=IPR018130 interpro_description=Ribosomal protein S2, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
gwe1_scaffold_652_18

Not on your lists

comp(17758..18039)
DNA (282bp) protein (94aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP54813.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
coiled-coil (db=Coil db_id=coil from=35 to=56 evalue=NA)
gwe1_scaffold_652_19
WS6_GWC1_33_20, WS6, Bacteria

Not on your lists

comp(18082..18717)
DNA (636bp) protein (212aa)
DNA repair protein RadC n=1 Tax=Sulfurihydrogenibium sp. (strain YO3AOP1) RepID=B2V8J4_SULSY
Repair protein RadC, DNA repair protein RadC protein {ECO:0000313|EMBL:KKP44718.1}; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWC1_33_2
UPF0758 protein
UPF0758 (db=PatternScan db_id=PS01302 from=164 to=169 evalue=0.0 interpro_id=IPR020891 interpro_description=Uncharacterised protein family UPF0758, conserved site)
gwe1_scaffold_652_20
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

Not on your lists

comp(18757..20886)
DNA (2130bp) protein (710aa)
DNA topoisomerase I (EC:5.99.1.2); K03168 DNA topoisomerase I [EC:5.99.1.2] Tax=RIFOXYB1_FULL_WS6_33_15_curated
DNA topoisomerase n=1 Tax=Nitrospina gracilis 3/211 RepID=M1Z155_9BACT rbh
hypothetical protein
TOPOISOMERASE_I_PROK (db=PatternScan db_id=PS00396 from=283 to=297 evalue=0.0 interpro_id=IPR023406 interpro_description=DNA topoisomerase, type IA, active site GO=Molecular Function: DNA topoisomerase type I activity (GO:0003917))
gwe1_scaffold_652_21
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(20981..21340)
DNA (360bp) protein (120aa)
Penicillin-binding protein 2 n=1 Tax=Anaerococcus lactolyticus ATCC 51172 RepID=C2BCG0_9FIRM
Penicillin-binding protein, penicillin-binding protein 2 {ECO:0000313|EMBL:KKP45650.1}; Flags: Fragment;; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bact
penicillin-binding protein
seg (db=Seg db_id=seg from=46 to=57)
Displaying 21 items

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