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gwe1_scaffold_884

Alias: GWE1_WS6_33_547_7

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
gwe1_scaffold_884_1

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comp(1..162)
-----------------
DNA (162bp)
protein (54aa)
gwe1_scaffold_884_2
WS6_GWE1_33_547, WS6_GWE1_33_547, WS6_GWE1_33_547, WS6_GWE1_33_547, Doikabacteria, Bacteria

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1781..2116
-----------------
DNA (336bp)
protein (112aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=2 to=13)
gwe1_scaffold_884_3

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comp(2815..3270)
-----------------
DNA (456bp)
protein (152aa)
tRNA/rRNA methyltransferase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DS75_9BACT
putative SpoU rRNA methylase family protein
no description (db=Gene3D db_id=G3DSA:3.40.1280.10 from=4 to=151 evalue=1.4e-36)
alpha/beta knot (db=superfamily db_id=SSF75217 from=1 to=151 evalue=2.1e-38)
gwe1_scaffold_884_4

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comp(3270..5291)
-----------------
DNA (2022bp)
protein (674aa)
ATP-dependent DNA helicase RecG n=1 Tax=Halanaerobium praevalens (strain ATCC 33744 / DSM 2228 / GSL) RepID=E3DQU0_HALPG rbh
hypothetical protein
seg (db=Seg db_id=seg from=2 to=11)
(db=HMMPfam db_id=PF00270 from=266 to=419 evalue=1.6e-19 interpro_id=IPR011545 interpro_description=DNA/RNA helicase, DEAD/DEAH box type, N-terminal GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: ATP binding (GO:0005524), Molecular Function: ATP-dependent helicase activity (GO:0008026))
gwe1_scaffold_884_5
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

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comp(5294..5404)
-----------------
DNA (111bp)
protein (37aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=11 to=33)
gwe1_scaffold_884_6

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comp(5427..6884)
-----------------
DNA (1458bp)
protein (486aa)
GTP pyrophosphokinase (RelA/SpoT) n=8 Tax=Clostridium difficile RepID=Q183H8_CLOD6
relA; GTP pyrophosphokinase
seg (db=Seg db_id=seg from=96 to=107)
TGS-like (db=superfamily db_id=SSF81271 from=383 to=456 evalue=1.5e-19 interpro_id=IPR012676 interpro_description=TGS-like)
gwe1_scaffold_884_7
WS6_GWF1_33_233, WS6, Bacteria

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comp(6931..8187)
-----------------
DNA (1257bp)
protein (419aa)
Tyrosine--tRNA ligase n=5 Tax=Brachyspira RepID=C0QX88_BRAHW rbh
hypothetical protein
AA_TRNA_LIGASE_I (db=PatternScan db_id=PS00178 from=46 to=56 evalue=0.0 interpro_id=IPR001412 interpro_description=Aminoacyl-tRNA synthetase, class I, conserved site GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: tRNA aminoacylation for protein translation (GO:0006418))
seg (db=Seg db_id=seg from=344 to=354)
gwe1_scaffold_884_8
WS6_GWF1_33_233, WS6, Bacteria

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comp(8227..9444)
-----------------
DNA (1218bp)
protein (406aa)
AAA ATPase, central domain protein n=12 Tax=Thermoanaerobacter RepID=B0K6V1_THEPX rbh
hypothetical protein
(db=HMMPfam db_id=PF03215 from=170 to=218 evalue=0.00011)
(db=HMMPfam db_id=PF12002 from=256 to=401 evalue=1.7e-56 interpro_id=IPR021886 interpro_description=MgsA AAA+ ATPase C-terminal)
gwe1_scaffold_884_9
GWD1_WS6_35_594, WS6, Bacteria

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comp(9490..10017)
-----------------
DNA (528bp)
protein (176aa)
Methyltransferase type 12 n=1 Tax=Desulfatibacillum alkenivorans (strain AK-01) RepID=B8FHU8_DESAA
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=5 to=21)
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=40 to=87 evalue=0.00033)
gwe1_scaffold_884_10
WS6_GWF1_33_233, WS6, Bacteria

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10055..10741
-----------------
DNA (687bp)
protein (229aa)
tRNA pseudouridine synthase B n=1 Tax=Anaerococcus hydrogenalis ACS-025-V-Sch4 RepID=F0H0Z3_9FIRM
pseudouridylate synthase
seg (db=Seg db_id=seg from=99 to=113)
(db=HMMPfam db_id=PF01509 from=25 to=174 evalue=1.9e-48 interpro_id=IPR002501 interpro_description=Pseudouridine synthase II GO=Biological Process: RNA processing (GO:0006396))
gwe1_scaffold_884_11

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10752..11450
-----------------
DNA (699bp)
protein (233aa)
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Hippea maritima (strain ATCC 700847 / DSM 10411 / MH2) RepID=F2LVJ8_HIPMA
hypothetical protein
RSMI (db=PatternScan db_id=PS01296 from=83 to=94 evalue=0.0 interpro_id=IPR018063 interpro_description=SAM-dependent methyltransferase RsmI, conserved site GO=Molecular Function: methyltransferase activity (GO:0008168))
TIGR00096: putative S-adenosylmethionine-d (db=HMMTigr db_id=TIGR00096 from=5 to=231 evalue=1.6e-39 interpro_id=IPR008189 interpro_description=rRNA small subunit methyltransferase I GO=Molecular Function: methyltransferase activity (GO:0008168))
gwe1_scaffold_884_12

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comp(11419..12324)
-----------------
DNA (906bp)
protein (302aa)
Hydrolase, TatD family n=2 Tax=Sulfurihydrogenibium RepID=B2V6K5_SULSY
hydrolase TatD
TATD_3 (db=PatternScan db_id=PS01091 from=226 to=242 evalue=0.0 interpro_id=IPR018228 interpro_description=Deoxyribonuclease, TatD-related, conserved site GO=Molecular Function: endodeoxyribonuclease activity, producing 5'-phosphomonoesters (GO:0016888))
seg (db=Seg db_id=seg from=35 to=46)
gwe1_scaffold_884_13
WS6_GWF1_33_233, WS6, Bacteria

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12405..13097
-----------------
DNA (693bp)
protein (231aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
gwe1_scaffold_884_14
GWD1_WS6_35_594, WS6, Bacteria

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comp(13089..14117)
-----------------
DNA (1029bp)
protein (343aa)
mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase (EC:2.7.8.13)
Phospho-N-acetylmuramoyl-pentapeptide-transferase n=1 Tax=Hahella chejuensis (strain KCTC 2396) RepID=MRAY_HAHCH
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
(db=HMMPfam db_id=PF00953 from=94 to=266 evalue=1.2e-09 interpro_id=IPR000715 interpro_description=Glycosyl transferase, family 4 GO=Molecular Function: phospho-N-acetylmuramoyl-pentapeptide-transferase activity (GO:0008963), Cellular Component: integral to membrane (GO:0016021))
gwe1_scaffold_884_15

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comp(14149..15993)
-----------------
DNA (1845bp)
protein (615aa)
Peptidoglycan glycosyltransferase n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CCK5_THET1 rbh
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=30 to=52)
(db=HMMPfam db_id=PF00905 from=281 to=600 evalue=1.5e-63 interpro_id=IPR001460 interpro_description=Penicillin-binding protein, transpeptidase GO=Molecular Function: penicillin binding (GO:0008658), Biological Process: peptidoglycan-based cell wall biogenesis (GO:0009273))
gwe1_scaffold_884_16

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comp(15986..16300)
-----------------
DNA (315bp)
protein (105aa)
coiled-coil (db=Coil db_id=coil from=41 to=62 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
gwe1_scaffold_884_17

Not on your lists

comp(16317..17063)
-----------------
DNA (747bp)
protein (249aa)
Ribosomal RNA small subunit methyltransferase H n=1 Tax=Anaerobaculum mobile (strain ATCC BAA-54 / DSM 13181 / NGA) RepID=I4BW68_ANAMD
S-adenosyl-methyltransferase MraW
TIGR00006: S-adenosyl-methyltransferase Mra (db=HMMTigr db_id=TIGR00006 from=1 to=248 evalue=1.6e-51 interpro_id=IPR002903 interpro_description=S-adenosyl-L-methionine-dependent methyltransferase, MraW GO=Molecular Function: methyltransferase activity (GO:0008168))
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=2 to=247 evalue=1.8e-21)
gwe1_scaffold_884_18
WS6_GWE1_33_547, WS6_GWE1_33_547, WS6_GWE1_33_547, WS6_GWE1_33_547, Doikabacteria, Bacteria

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17265..17630
-----------------
DNA (366bp)
protein (122aa)

This feature has no annotations

gwe1_scaffold_884_19
WS6_GWF1_33_233, WS6, Bacteria

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comp(17821..19113)
-----------------
DNA (1293bp)
protein (431aa)
EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZQ87_OPITP rbh
3-phosphoshikimate 1-carboxyvinyltransferase
(db=HMMPfam db_id=PF00275 from=6 to=419 evalue=1.5e-67 interpro_id=IPR001986 interpro_description=Enolpyruvate transferase domain GO=Molecular Function: transferase activity, transferring alkyl or aryl (other than methyl) groups (GO:0016765))
UDP-N-ACETYLGLUCOSAMINE ENOLPYRUVYL TRANSFERASE (db=HMMPanther db_id=PTHR21090:SF4 from=93 to=429 evalue=1.8e-84 interpro_id=IPR005750 interpro_description=UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO=Molecular Function: transferase activity (GO:0016740), Biological Process: UDP-N-acetylgalactosamine biosynthetic process (GO:0019277))
gwe1_scaffold_884_20

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comp(19123..19743)
-----------------
DNA (621bp)
protein (207aa)
UDP-N-acetylmuramate dehydrogenase (EC:1.1.1.158)
UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Flexibacter litoralis (strain ATCC 23117 / DSM 6794 / NBRC 15988 / NCIMB 1366 / Sio-4) RepID=I4ALE5_FLELS
UDP-N-ACETYLENOLPYRUVOYLGLUCOSAMINE REDUCTASE (db=HMMPanther db_id=PTHR21071 from=1 to=206 evalue=1.7e-08 interpro_id=IPR003170 interpro_description=UDP-N-acetylenolpyruvoylglucosamine reductase GO=Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762), Biological Process: oxidation-reduction process (GO:0055114))
Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain (db=superfamily db_id=SSF56194 from=77 to=206 evalue=1.4e-27 interpro_id=IPR011601 interpro_description=UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO=Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762), Biological Process: oxidation-reduction process (GO:0055114))
Displaying 20 items

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