ggKbase home page

gwe1_scaffold_2139

Alias: GWE1_WS6_33_547_24

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwe1_scaffold_2139_1
WS6_GWC1_33_20, WS6, Bacteria

Not on your lists

comp(3..1184)
DNA (1182bp) protein (394aa)
Peptidoglycan glycosyltransferase, penicillin-binding protein 2 {ECO:0000313|EMBL:KKP44720.1}; EC=2.4.1.129 {ECO:0000313|EMBL:KKP44720.1};; TaxID=1619089 species="Bacteria; candidate division WS6.;" s
Penicillin-binding protein 2 n=1 Tax=Desulfobacter postgatei 2ac9 RepID=I5B1V8_9DELT
mrdA; penicillin-binding protein 2 MrdA
transmembrane_regions (db=TMHMM db_id=tmhmm from=50 to=72)
gwe1_scaffold_2139_2

Not on your lists

comp(1192..1686)
DNA (495bp) protein (165aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP54893.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=35)
seg (db=Seg db_id=seg from=4 to=28)
gwe1_scaffold_2139_3
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(1689..2510)
DNA (822bp) protein (274aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP44432.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
coiled-coil (db=Coil db_id=coil from=73 to=94 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
seg (db=Seg db_id=seg from=13 to=24)
gwe1_scaffold_2139_4

Not on your lists

comp(2525..3580)
DNA (1056bp) protein (352aa)
Rod shape-determining protein MreB n=2 Tax=Thermaerobacter RepID=E6SKD9_THEM7 rbh
Rod shape-determining protein MreB {ECO:0000313|EMBL:KKP54895.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
rod shape-determining protein MreB
Actin-like ATPase domain (db=superfamily db_id=SSF53067 from=154 to=344 evalue=1.4e-45)
gwe1_scaffold_2139_5
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists


comp(3654..3869)
DNA (216bp) protein (72aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP44434.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
(db=HMMPfam db_id=PF00830 from=3 to=67 evalue=1.3e-09 interpro_id=IPR001383 interpro_description=Ribosomal protein L28 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L28p-like (db=superfamily db_id=SSF143800 from=1 to=67 evalue=2.7e-11)
gwe1_scaffold_2139_6
GWD1_WS6_35_594, WS6, Bacteria

Not on your lists

3949..4569
DNA (621bp) protein (207aa)
Peptidase M50 n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TR65_ALKMQ
Peptidase M50 {ECO:0000313|EMBL:KKP82270.1}; TaxID=1619092 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWD1_35_594.;"
peptidase M50
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
gwe1_scaffold_2139_7
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

4976..5713
DNA (738bp) protein (246aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP44436.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=6 to=30)
gwe1_scaffold_2139_8
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(5839..6732)
DNA (894bp) protein (298aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP44437.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
gwe1_scaffold_2139_9
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

Not on your lists

7146..7325
DNA (180bp) protein (60aa)
SecE subunit of protein translocation complex Tax=RIFOXYB1_FULL_WS6_33_15_curated
secE_bact: preprotein translocase, SecE sub (db=HMMTigr db_id=TIGR00964 from=4 to=56 evalue=0.00062 interpro_id=IPR005807 interpro_description=SecE subunit of protein translocation complex GO=Biological Process: protein secretion (GO:0009306), Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity (GO:0015450), Cellular Component: integral to membrane (GO:0016021))
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
(db=HMMPfam db_id=PF00584 from=4 to=54 evalue=8.8e-11 interpro_id=IPR001901 interpro_description=Protein translocase complex, SecE/Sec61-gamma subunit GO=Biological Process: protein targeting (GO:0006605), Biological Process: intracellular protein transport (GO:0006886), Cellular Component: membrane (GO:0016020))
gwe1_scaffold_2139_10
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

7351..7896
DNA (546bp) protein (182aa)
Transcription termination/antitermination protein nusG n=2 Tax=Roseiflexus RepID=A5UYI3_ROSS1
NusG antitermination factor, transcriptional antiterminator NusG {ECO:0000313|EMBL:KKP44439.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW20
NusG antitermination factor
no description (db=HMMSmart db_id=SM00739 from=127 to=154 evalue=0.002 interpro_id=IPR005824 interpro_description=KOW)
gwe1_scaffold_2139_11
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists


7915..8340
DNA (426bp) protein (142aa)
50S ribosomal protein L11 n=1 Tax=Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC 101012 / SSM1) RepID=D3P948_DEFDS
50S ribosomal protein L11, large subunit ribosomal protein L11 {ECO:0000313|EMBL:KKP44440.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011
rplK; 50S ribosomal protein L11
seg (db=Seg db_id=seg from=3 to=14)
gwe1_scaffold_2139_12
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists


8359..9048
DNA (690bp) protein (230aa)
50S ribosomal protein L1 n=1 Tax=Fervidobacterium pennivorans (strain DSM 9078 / Ven5) RepID=H9UCM6_FERPD
50S ribosomal protein L1, large subunit ribosomal protein L1 {ECO:0000313|EMBL:KKP44441.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_G
50S ribosomal protein L1
coiled-coil (db=Coil db_id=coil from=87 to=108 evalue=NA)
gwe1_scaffold_2139_13
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

Not on your lists

9210..9398
DNA (189bp) protein (63aa)
Tax=RIFOXYB1_FULL_WS6_33_15_curated
Displaying 13 items

View Taxonomy