Alias: ACD2_2099.34199.60
name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
ACD2_32_1
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(2..103)
|
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
seg (db=Seg db_id=seg from=10 to=31)
Pili subunits (db=superfamily db_id=SSF54523 from=10 to=33 evalue=1.2e-08)
|
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ACD2_32_2
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(131..994)
|
seg (db=Seg db_id=seg from=242 to=255)
Fib_succ_major (db=HMMPfam db_id=PF09603 from=150 to=286 evalue=1.5e-16 interpro_id=IPR011871 interpro_description=Fibrobacter succinogenes major paralogous domain)
Fib_succ_major: Fibrobacter succinogen (db=HMMTigr db_id=TIGR02145 from=137 to=287 evalue=1.2e-07 interpro_id=IPR011871 interpro_description=Fibrobacter succinogenes major paralogous domain)
seg 242..255 Tax=ACD2
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ACD2_32_3
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
2039..3022
|
2039..3022 + (rbs_motif=TAA rbs_spacer=5bp)
hypothetical protein Tax=ACD2
|
|
ACD2_32_4
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
3659..4036
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3659..4036 + (rbs_motif=TAA rbs_spacer=4bp)
hypothetical protein Tax=ACD2
|
|
ACD2_32_5
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
4038..4385
|
4038..4385 + (rbs_motif=TAA rbs_spacer=15bp)
hypothetical protein Tax=ACD2
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|
ACD2_32_6
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
4699..5637
|
RNA methylase
NOL1_NOP2_SUN (db=PatternScan db_id=PS01153 from=180 to=191 evalue=0.0 interpro_id=IPR018314 interpro_description=Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: methyltransferase activity (GO:0008168))
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=2 to=312 evalue=6.8e-48)
NOP2(YEAST)-RELATED NOL1/NOP2/FMU(SUN) DOMAIN-CONTAINING (db=HMMPanther db_id=PTHR22807 from=71 to=266 evalue=1.8e-43)
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ACD2_32_7
unknown
|
Not on your lists |
comp(6801..7823)
|
metal-dependent phosphoesterase n=2 Tax=Fusobacterium RepID=UPI0001BC4C5B (db=UNIREF evalue=2.0e-09 bit_score=67.0 identity=24.55 coverage=72.4340175953079)
PHP domain protein; K07053 (db=KEGG evalue=2.0e-09 bit_score=66.6 identity=22.89 coverage=74.4868035190616)
PHP domain-like (db=superfamily db_id=SSF89550 from=1 to=274 evalue=6.4e-23 interpro_id=IPR016195 interpro_description=Polymerase/histidinol phosphatase-like GO=Molecular Function: catalytic activity (GO:0003824))
PHP (db=HMMPfam db_id=PF02811 from=3 to=84 evalue=6.2e-08 interpro_id=IPR004013 interpro_description=PHP, C-terminal GO=Molecular Function: catalytic activity (GO:0003824))
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ACD2_32_8
unknown
|
Not on your lists |
7989..8732
|
Transcriptional regulator, TrmB n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N9V7_9BACT (db=UNIREF evalue=2.0e-13 bit_score=79.7 identity=25.59 coverage=81.4516129032258)
transcriptional regulator TrmB (db=KEGG evalue=5.0e-10 bit_score=68.2 identity=27.41 coverage=94.758064516129)
TrmB (db=HMMPfam db_id=PF01978 from=7 to=59 evalue=2.0e-10 interpro_id=IPR002831 interpro_description=Transcription regulator TrmB, N-terminal)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=3 to=97 evalue=1.1e-07)
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ACD2_32_9
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
8873..9613
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8873..9613 + (rbs_motif=TAA rbs_spacer=12bp)
hypothetical protein Tax=ACD2
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ACD2_32_10
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(9660..12704)
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UvrD/REP helicase
UvrD/REP helicase
UvrD/REP helicase
UvrD/REP helicase n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PL50_CHIPD (db=UNIREF evalue=2.0e-94 bit_score=351.0 identity=28.63 coverage=99.0147783251232)
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ACD2_32_11
ACD2, Gracilibacteria, Bacteria
|
Not on your lists |
12909..13415
|
12909..13415 + (rbs_motif=TAA rbs_spacer=9bp)
hypothetical protein Tax=ACD2
|
|
ACD2_32_12
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
13578..14078
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13578..14078 + (rbs_motif=TAA rbs_spacer=11bp)
hypothetical protein Tax=ACD2
|
|
ACD2_32_13
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
14078..16123
|
seg (db=Seg db_id=seg from=205 to=217)
seg (db=Seg db_id=seg from=604 to=612)
seg (db=Seg db_id=seg from=652 to=670)
seg 205..217 Tax=ACD2
|
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ACD2_32_14
ACD2, Gracilibacteria, Bacteria
|
Not on your lists |
comp(16120..16308)
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coiled-coil (db=Coil db_id=coil from=22 to=56 evalue=NA)
coiled-coil 22..56 Tax=ACD2
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ACD2_32_15
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(16336..17763)
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exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase (EC:2.7.8.6)
seg (db=Seg db_id=seg from=52 to=73)
seg (db=Seg db_id=seg from=15 to=27)
transmembrane_regions (db=TMHMM db_id=tmhmm from=51 to=73)
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ACD2_32_16
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
18083..18601
|
||
ACD2_32_17
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
comp(18747..20204)
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Cysteinyl-tRNA synthetase n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=SYC_PARUW (db=UNIREF evalue=2.0e-100 bit_score=370.0 identity=39.34 coverage=95.8847736625514)
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16)
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16)
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16)
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ACD2_32_18
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(20217..23504)
|
hypothetical protein
seg (db=Seg db_id=seg from=881 to=894)
seg (db=Seg db_id=seg from=295 to=311)
transmembrane_regions (db=TMHMM db_id=tmhmm from=31 to=53)
|
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ACD2_32_19
ACD2, Gracilibacteria, Bacteria
|
Not on your lists |
comp(23506..24966)
|
cell envelope-related transcriptional attenuator
transmembrane_regions (db=TMHMM db_id=tmhmm from=36 to=58)
seg (db=Seg db_id=seg from=56 to=74)
|
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ACD2_32_20
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
25043..25195
|
25043..25195 + (rbs_motif=TAA rbs_spacer=14bp)
hypothetical protein Tax=ACD2
|
|
ACD2_32_21
ACD2, Gracilibacteria, Bacteria
|
Not on your lists |
comp(25122..25304)
|
25122..25304 - (rbs_motif=TAAAAA rbs_spacer=4bp)
hypothetical protein Tax=ACD2
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ACD2_32_22
ACD2, Gracilibacteria, Bacteria
|
Not on your lists |
25501..26466
|
mraW; S-adenosyl-methyltransferase MraW (EC:2.1.1.-)
seg (db=Seg db_id=seg from=280 to=298)
Methyltransf_5 (db=HMMPfam db_id=PF01795 from=11 to=318 evalue=1.2e-72 interpro_id=IPR002903 interpro_description=S-adenosyl-L-methionine-dependent methyltransferase, MraW GO=Molecular Function: methyltransferase activity (GO:0008168))
S-adenosyl-L-methionine dependent methyltransferase, MraW type (db=HMMPIR db_id=PIRSF004486 from=6 to=320 evalue=4.6e-69 interpro_id=IPR002903 interpro_description=S-adenosyl-L-methionine-dependent methyltransferase, MraW GO=Molecular Function: methyltransferase activity (GO:0008168))
|
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ACD2_32_23
ACD2, Gracilibacteria, Bacteria
|
Not on your lists |
26478..26858
|
transmembrane_regions (db=TMHMM db_id=tmhmm from=28 to=50)
transmembrane_regions 28..50 Tax=ACD2
|
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ACD2_32_24
unknown
|
Not on your lists |
26923..27213
|
Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding protein n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EGD8_9EURY (db=UNIREF evalue=1.0e-13 bit_score=78.6 identity=39.18 coverage=90.7216494845361)
methylated-DNA--protein-cysteine methyltransferase; K00567 methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] (db=KEGG evalue=5.0e-10 bit_score=66.2 identity=40.74 coverage=81.4432989690722)
DNA_binding_1 (db=HMMPfam db_id=PF01035 from=2 to=80 evalue=1.0e-13 interpro_id=IPR014048 interpro_description=Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: DNA repair (GO:0006281))
Methylated DNA-protein cysteine methyltransferase, C-terminal domain (db=superfamily db_id=SSF46767 from=3 to=78 evalue=5.6e-12 interpro_id=IPR014048 interpro_description=Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: DNA repair (GO:0006281))
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ACD2_32_25
uncultured bacterium (gcode 4), Bacteria
|
Not on your lists |
comp(27186..27902)
|
DNA alkylation repair enzyme
seg (db=Seg db_id=seg from=165 to=180)
DNA_alkylation (db=HMMPfam db_id=PF08713 from=6 to=223 evalue=7.5e-58 interpro_id=IPR014825 interpro_description=DNA alkylation repair enzyme)
ARM repeat (db=superfamily db_id=SSF48371 from=8 to=226 evalue=1.2e-38 interpro_id=IPR016024 interpro_description=Armadillo-type fold GO=Molecular Function: binding (GO:0005488))
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ACD2_32_26
ACD2, Gracilibacteria, Bacteria
|
Not on your lists |
comp(27956..28147)
|
27956..28147 - (rbs_motif=TAAAA rbs_spacer=14bp)
hypothetical protein Tax=ACD2
|
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ACD2_32_27
ACD2, Gracilibacteria, Bacteria
|
Not on your lists |
28204..28566
|
seg (db=Seg db_id=seg from=4 to=13)
seg 4..13 Tax=ACD2
|
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ACD2_32_28
ACD2, Gracilibacteria, Bacteria
|
Not on your lists |
comp(28876..29415)
|
28876..29415 - (rbs_motif=TAA rbs_spacer=12bp)
hypothetical protein Tax=ACD2
|
|
ACD2_32_29
unknown
|
Not on your lists |
comp(30196..30456)
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Transcriptional regulator
Transcriptional regulator n=1 Tax=Clostridium butyricum E4 str. BoNT E BL5262 RepID=C4IB04_CLOBU (db=UNIREF evalue=5.0e-22 bit_score=106.0 identity=56.47 coverage=96.551724137931)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=1 to=84 evalue=9.4e-22)
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=3 to=85 evalue=5.1e-18 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
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ACD2_32_30
unknown
|
Not on your lists |
comp(30585..31733)
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Putative uncharacterized protein n=1 Tax=Yersinia bercovieri ATCC 43970 RepID=C4RX86_YERBE (db=UNIREF evalue=2.0e-14 bit_score=83.6 identity=31.25 coverage=39.686684073107)
diguanylate cyclase and metal dependent phosphohydrolase (db=KEGG evalue=5.0e-14 bit_score=82.4 identity=32.67 coverage=37.0757180156658)
Nucleotide cyclase (db=superfamily db_id=SSF55073 from=196 to=341 evalue=1.0e-23 interpro_id=IPR001054 interpro_description=Adenylyl cyclase class-3/4/guanylyl cyclase GO=Biological Process: cyclic nucleotide biosynthetic process (GO:0009190), Molecular Function: phosphorus-oxygen lyase activity (GO:0016849), Biological Process: intracellular signaling pathway (GO:0023034))
no description (db=Gene3D db_id=G3DSA:3.30.70.270 from=186 to=347 evalue=3.1e-19)
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