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ACD2_32

Alias: ACD2_2099.34199.60

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD2_32_1
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(2..103)
DNA (102bp) protein (34aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
seg (db=Seg db_id=seg from=10 to=31)
Pili subunits (db=superfamily db_id=SSF54523 from=10 to=33 evalue=1.2e-08)
N_methyl (db=HMMPfam db_id=PF07963 from=8 to=27 evalue=3.9e-07 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
ACD2_32_2
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(131..994)
DNA (864bp) protein (288aa)
seg (db=Seg db_id=seg from=242 to=255)
Fib_succ_major (db=HMMPfam db_id=PF09603 from=150 to=286 evalue=1.5e-16 interpro_id=IPR011871 interpro_description=Fibrobacter succinogenes major paralogous domain)
Fib_succ_major: Fibrobacter succinogen (db=HMMTigr db_id=TIGR02145 from=137 to=287 evalue=1.2e-07 interpro_id=IPR011871 interpro_description=Fibrobacter succinogenes major paralogous domain)
seg 242..255 Tax=ACD2
ACD2_32_3
ACD2, Gracilibacteria, Bacteria

Not on your lists

2039..3022
DNA (984bp) protein (328aa)
2039..3022 + (rbs_motif=TAA rbs_spacer=5bp)
hypothetical protein Tax=ACD2
ACD2_32_4
ACD2, Gracilibacteria, Bacteria

Not on your lists

3659..4036
DNA (378bp) protein (126aa)
3659..4036 + (rbs_motif=TAA rbs_spacer=4bp)
hypothetical protein Tax=ACD2
ACD2_32_5
ACD2, Gracilibacteria, Bacteria

Not on your lists

4038..4385
DNA (348bp) protein (116aa)
4038..4385 + (rbs_motif=TAA rbs_spacer=15bp)
hypothetical protein Tax=ACD2
ACD2_32_6

Not on your lists

4699..5637
DNA (939bp) protein (313aa)
RNA methylase
NOL1_NOP2_SUN (db=PatternScan db_id=PS01153 from=180 to=191 evalue=0.0 interpro_id=IPR018314 interpro_description=Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: methyltransferase activity (GO:0008168))
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=2 to=312 evalue=6.8e-48)
NOP2(YEAST)-RELATED NOL1/NOP2/FMU(SUN) DOMAIN-CONTAINING (db=HMMPanther db_id=PTHR22807 from=71 to=266 evalue=1.8e-43)
ACD2_32_7
unknown

Not on your lists

comp(6801..7823)
DNA (1023bp) protein (341aa)
metal-dependent phosphoesterase n=2 Tax=Fusobacterium RepID=UPI0001BC4C5B (db=UNIREF evalue=2.0e-09 bit_score=67.0 identity=24.55 coverage=72.4340175953079)
PHP domain protein; K07053 (db=KEGG evalue=2.0e-09 bit_score=66.6 identity=22.89 coverage=74.4868035190616)
PHP domain-like (db=superfamily db_id=SSF89550 from=1 to=274 evalue=6.4e-23 interpro_id=IPR016195 interpro_description=Polymerase/histidinol phosphatase-like GO=Molecular Function: catalytic activity (GO:0003824))
PHP (db=HMMPfam db_id=PF02811 from=3 to=84 evalue=6.2e-08 interpro_id=IPR004013 interpro_description=PHP, C-terminal GO=Molecular Function: catalytic activity (GO:0003824))
ACD2_32_8
unknown

Not on your lists

7989..8732
DNA (744bp) protein (248aa)
Transcriptional regulator, TrmB n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N9V7_9BACT (db=UNIREF evalue=2.0e-13 bit_score=79.7 identity=25.59 coverage=81.4516129032258)
transcriptional regulator TrmB (db=KEGG evalue=5.0e-10 bit_score=68.2 identity=27.41 coverage=94.758064516129)
TrmB (db=HMMPfam db_id=PF01978 from=7 to=59 evalue=2.0e-10 interpro_id=IPR002831 interpro_description=Transcription regulator TrmB, N-terminal)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=3 to=97 evalue=1.1e-07)
ACD2_32_9
ACD2, Gracilibacteria, Bacteria

Not on your lists

8873..9613
DNA (741bp) protein (247aa)
8873..9613 + (rbs_motif=TAA rbs_spacer=12bp)
hypothetical protein Tax=ACD2
ACD2_32_10
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(9660..12704)
DNA (3045bp) protein (1015aa)
UvrD/REP helicase
UvrD/REP helicase
UvrD/REP helicase
UvrD/REP helicase n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PL50_CHIPD (db=UNIREF evalue=2.0e-94 bit_score=351.0 identity=28.63 coverage=99.0147783251232)
ACD2_32_11
ACD2, Gracilibacteria, Bacteria

Not on your lists

12909..13415
DNA (507bp) protein (169aa)
12909..13415 + (rbs_motif=TAA rbs_spacer=9bp)
hypothetical protein Tax=ACD2
ACD2_32_12
ACD2, Gracilibacteria, Bacteria

Not on your lists

13578..14078
DNA (501bp) protein (167aa)
13578..14078 + (rbs_motif=TAA rbs_spacer=11bp)
hypothetical protein Tax=ACD2
ACD2_32_13
ACD2, Gracilibacteria, Bacteria

Not on your lists

14078..16123
DNA (2046bp) protein (682aa)
seg (db=Seg db_id=seg from=205 to=217)
seg (db=Seg db_id=seg from=604 to=612)
seg (db=Seg db_id=seg from=652 to=670)
seg 205..217 Tax=ACD2
ACD2_32_14
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(16120..16308)
DNA (189bp) protein (63aa)
coiled-coil (db=Coil db_id=coil from=22 to=56 evalue=NA)
coiled-coil 22..56 Tax=ACD2
ACD2_32_15
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(16336..17763)
DNA (1428bp) protein (476aa)
exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase (EC:2.7.8.6)
seg (db=Seg db_id=seg from=52 to=73)
seg (db=Seg db_id=seg from=15 to=27)
transmembrane_regions (db=TMHMM db_id=tmhmm from=51 to=73)
ACD2_32_16
ACD2, Gracilibacteria, Bacteria

Not on your lists

18083..18601
DNA (519bp) protein (173aa)
seg (db=Seg db_id=seg from=148 to=159)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=26)
LemA (db=HMMPfam db_id=PF04011 from=4 to=161 evalue=4.4e-05 interpro_id=IPR007156 interpro_description=LemA)
transmembrane_regions 4..26 Tax=ACD2
ACD2_32_17

Not on your lists

comp(18747..20204)
DNA (1458bp) protein (486aa)
Cysteinyl-tRNA synthetase n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=SYC_PARUW (db=UNIREF evalue=2.0e-100 bit_score=370.0 identity=39.34 coverage=95.8847736625514)
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16)
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16)
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16)
ACD2_32_18
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(20217..23504)
DNA (3288bp) protein (1096aa)
hypothetical protein
seg (db=Seg db_id=seg from=881 to=894)
seg (db=Seg db_id=seg from=295 to=311)
transmembrane_regions (db=TMHMM db_id=tmhmm from=31 to=53)
ACD2_32_19
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(23506..24966)
DNA (1461bp) protein (487aa)
cell envelope-related transcriptional attenuator
transmembrane_regions (db=TMHMM db_id=tmhmm from=36 to=58)
seg (db=Seg db_id=seg from=56 to=74)
LytR_cpsA_psr (db=HMMPfam db_id=PF03816 from=107 to=263 evalue=2.7e-26 interpro_id=IPR004474 interpro_description=Cell envelope-related transcriptional attenuator)
ACD2_32_20
ACD2, Gracilibacteria, Bacteria

Not on your lists

25043..25195
DNA (153bp) protein (51aa)
25043..25195 + (rbs_motif=TAA rbs_spacer=14bp)
hypothetical protein Tax=ACD2
ACD2_32_21
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(25122..25304)
DNA (183bp) protein (61aa)
25122..25304 - (rbs_motif=TAAAAA rbs_spacer=4bp)
hypothetical protein Tax=ACD2
ACD2_32_22
ACD2, Gracilibacteria, Bacteria

Not on your lists

25501..26466
DNA (966bp) protein (322aa)
mraW; S-adenosyl-methyltransferase MraW (EC:2.1.1.-)
seg (db=Seg db_id=seg from=280 to=298)
Methyltransf_5 (db=HMMPfam db_id=PF01795 from=11 to=318 evalue=1.2e-72 interpro_id=IPR002903 interpro_description=S-adenosyl-L-methionine-dependent methyltransferase, MraW GO=Molecular Function: methyltransferase activity (GO:0008168))
S-adenosyl-L-methionine dependent methyltransferase, MraW type (db=HMMPIR db_id=PIRSF004486 from=6 to=320 evalue=4.6e-69 interpro_id=IPR002903 interpro_description=S-adenosyl-L-methionine-dependent methyltransferase, MraW GO=Molecular Function: methyltransferase activity (GO:0008168))
ACD2_32_23
ACD2, Gracilibacteria, Bacteria

Not on your lists

26478..26858
DNA (381bp) protein (127aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=28 to=50)
transmembrane_regions 28..50 Tax=ACD2
ACD2_32_24
unknown

Not on your lists

26923..27213
DNA (291bp) protein (97aa)
Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding protein n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EGD8_9EURY (db=UNIREF evalue=1.0e-13 bit_score=78.6 identity=39.18 coverage=90.7216494845361)
methylated-DNA--protein-cysteine methyltransferase; K00567 methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] (db=KEGG evalue=5.0e-10 bit_score=66.2 identity=40.74 coverage=81.4432989690722)
DNA_binding_1 (db=HMMPfam db_id=PF01035 from=2 to=80 evalue=1.0e-13 interpro_id=IPR014048 interpro_description=Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: DNA repair (GO:0006281))
Methylated DNA-protein cysteine methyltransferase, C-terminal domain (db=superfamily db_id=SSF46767 from=3 to=78 evalue=5.6e-12 interpro_id=IPR014048 interpro_description=Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: DNA repair (GO:0006281))
ACD2_32_25

Not on your lists

comp(27186..27902)
DNA (717bp) protein (239aa)
DNA alkylation repair enzyme
seg (db=Seg db_id=seg from=165 to=180)
DNA_alkylation (db=HMMPfam db_id=PF08713 from=6 to=223 evalue=7.5e-58 interpro_id=IPR014825 interpro_description=DNA alkylation repair enzyme)
ARM repeat (db=superfamily db_id=SSF48371 from=8 to=226 evalue=1.2e-38 interpro_id=IPR016024 interpro_description=Armadillo-type fold GO=Molecular Function: binding (GO:0005488))
ACD2_32_26
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(27956..28147)
DNA (192bp) protein (64aa)
27956..28147 - (rbs_motif=TAAAA rbs_spacer=14bp)
hypothetical protein Tax=ACD2
ACD2_32_27
ACD2, Gracilibacteria, Bacteria

Not on your lists

28204..28566
DNA (363bp) protein (121aa)
seg (db=Seg db_id=seg from=4 to=13)
seg 4..13 Tax=ACD2
ACD2_32_28
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(28876..29415)
DNA (540bp) protein (180aa)
28876..29415 - (rbs_motif=TAA rbs_spacer=12bp)
hypothetical protein Tax=ACD2
ACD2_32_29
unknown

Not on your lists

comp(30196..30456)
DNA (261bp) protein (87aa)
Transcriptional regulator
Transcriptional regulator n=1 Tax=Clostridium butyricum E4 str. BoNT E BL5262 RepID=C4IB04_CLOBU (db=UNIREF evalue=5.0e-22 bit_score=106.0 identity=56.47 coverage=96.551724137931)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=1 to=84 evalue=9.4e-22)
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=3 to=85 evalue=5.1e-18 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
ACD2_32_30
unknown

Not on your lists

comp(30585..31733)
DNA (1149bp) protein (383aa)
Putative uncharacterized protein n=1 Tax=Yersinia bercovieri ATCC 43970 RepID=C4RX86_YERBE (db=UNIREF evalue=2.0e-14 bit_score=83.6 identity=31.25 coverage=39.686684073107)
diguanylate cyclase and metal dependent phosphohydrolase (db=KEGG evalue=5.0e-14 bit_score=82.4 identity=32.67 coverage=37.0757180156658)
Nucleotide cyclase (db=superfamily db_id=SSF55073 from=196 to=341 evalue=1.0e-23 interpro_id=IPR001054 interpro_description=Adenylyl cyclase class-3/4/guanylyl cyclase GO=Biological Process: cyclic nucleotide biosynthetic process (GO:0009190), Molecular Function: phosphorus-oxygen lyase activity (GO:0016849), Biological Process: intracellular signaling pathway (GO:0023034))
no description (db=Gene3D db_id=G3DSA:3.30.70.270 from=186 to=347 evalue=3.1e-19)
Displaying items 1-30 of 33 in total

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