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ACD2_17_23

Organism: ACD2

partial RP 39 / 55 MC: 7 BSCG 35 / 51 MC: 1 ASCG 0 / 38
Location: 24333..24896

Top 3 Functional Annotations

Value Algorithm Source
ECF subfamily RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 42.9
  • Coverage: 182.0
  • Bit_score: 143
  • Evalue 6.30e-32
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=15 to=180 evalue=7.5e-33 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMTigr
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 7.50e-33
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=9 to=84 evalue=3.3e-17 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: superfamily
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 3.30e-17

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Taxonomy

uncultured bacterium (gcode 4) → Bacteria

Sequences

DNA sequence
Length: 564
ATGGACGAAAAAAGTATTGTTCAAAAGATTAAAGAGGATCCTTCCAATTTTTGAGAGATTATCGATTTATATGAAGCCAAGCTCTTGAGATATGTGCTGAGGATTTGAGATATGCCTTATGAAGAAGCTGAGAACATAACTCAAGATATATTCATAAAAGTCTACAGAAACATTAATTCATATGATTCAAGCTTCCCTTTTTCAAGCTGGATATACAGGATCGCACATAATGAGACTATAGATTATTACAGGAAGAATGAGAAGACAAAAAACAACATTTCCCTCTCTGATGAGGATTATAAGAACCTTATAGACAACATCACAGATAAGAAAACACCGCATCAGGAGCTAGAGAAGTCAAATATAAAGGAATGCGTGAGAAAATGAATAAATATGCTGAATATGGAACAAAGAGAGATCATGATCCTTAAATTCATCGAAGAGAAGTGATATGAGGAAATAAGTGATATCTTGAAGATGCCCATCTGAACGGTATGAACCATAATCAATCGGGCAAAGAAACAGCTCAAGGAAAATCTGGAAAAATTACATTGTAACATTTAG
PROTEIN sequence
Length: 188
MDEKSIVQKIKEDPSNFGEIIDLYEAKLLRYVLRIGDMPYEEAENITQDIFIKVYRNINSYDSSFPFSSWIYRIAHNETIDYYRKNEKTKNNISLSDEDYKNLIDNITDKKTPHQELEKSNIKECVRKGINMLNMEQREIMILKFIEEKGYEEISDILKMPIGTVGTIINRAKKQLKENLEKLHCNI*