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ACD2_17

Alias: ACD2_2952.37351.57

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Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD2_17_1
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(3..74)
DNA (72bp) protein (24aa)
3..74 - (rbs_motif=AAAAA rbs_spacer=3bp)
hypothetical protein Tax=ACD2
ACD2_17_2
ACD2, Gracilibacteria, Bacteria

Not on your lists

120..281
DNA (162bp) protein (54aa)
120..281 + (rbs_motif=TAA rbs_spacer=6bp)
hypothetical protein Tax=ACD2
ACD2_17_3
ACD2, Gracilibacteria, Bacteria

Not on your lists

362..637
DNA (276bp) protein (92aa)
hypothetical protein
DUF2132 (db=HMMPfam db_id=PF09905 from=13 to=74 evalue=7.1e-23 interpro_id=IPR018668 interpro_description=Protein of unknown function DUF2132)
hypothetical protein alias=ACD2_2952.37351.57G0003,ACD2_2952.37351.57_3,ACD2_C00017G00003 id=34554 tax=ACD2 species=Rhodopirellula baltica genus=Rhodopirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes organism_group=BD1-5 organism_desc=BD1-5
hypothetical protein Tax=ACD2
ACD2_17_4
ACD2, Gracilibacteria, Bacteria

Not on your lists

627..1307
DNA (681bp) protein (227aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
seg (db=Seg db_id=seg from=5 to=23)
transmembrane_regions 5..27 Tax=ACD2
ACD2_17_5
ACD2, Gracilibacteria, Bacteria

Not on your lists

1246..2367
DNA (1122bp) protein (374aa)
S-layer protein
S-layer domain protein n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CTI9_PAESJ (db=UNIREF evalue=1.0e-16 bit_score=91.3 identity=36.78 coverage=44.6524064171123)
transmembrane_regions (db=TMHMM db_id=tmhmm from=79 to=101)
Cupredoxins (db=superfamily db_id=SSF49503 from=272 to=373 evalue=8.1e-17 interpro_id=IPR008972 interpro_description=Cupredoxin)
ACD2_17_6
ACD2, Gracilibacteria, Bacteria

Not on your lists

2375..3520
DNA (1146bp) protein (382aa)
seg (db=Seg db_id=seg from=357 to=378)
seg (db=Seg db_id=seg from=69 to=81)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=31)
transmembrane_regions 13..31 Tax=ACD2
ACD2_17_7
unknown

Not on your lists

3590..4180
DNA (591bp) protein (197aa)
GTP-binding protein engB
Ribosome biogenesis GTP-binding protein YsxC n=8 Tax=Lactobacillus jensenii RepID=D1WG81_9LACO (db=UNIREF evalue=1.0e-24 bit_score=115.0 identity=48.39 coverage=61.9289340101523)
seg (db=Seg db_id=seg from=158 to=170)
GTPase_YsxC: ribosome biogenesis GTP-bind (db=HMMTigr db_id=TIGR03598 from=8 to=195 evalue=3.5e-34 interpro_id=IPR019987 interpro_description=GTP-binding protein, ribosome biogenesis, YsxC)
ACD2_17_8
ACD2, Gracilibacteria, Bacteria

Not on your lists

4180..4287
DNA (108bp) protein (36aa)
4180..4287 + (rbs_motif=TAAAA rbs_spacer=14bp)
hypothetical protein Tax=ACD2
ACD2_17_9
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(4435..5826)
DNA (1392bp) protein (464aa)
rubredoxin-type Fe(Cys)4 protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=137 to=154)
transmembrane_regions (db=TMHMM db_id=tmhmm from=103 to=125)
transmembrane_regions (db=TMHMM db_id=tmhmm from=34 to=53)
Involved in the transport of iron across plant plasma membranes Jill Banfield (11/15/12)
Rubredoxin is a small nonheme iron protein that serves as an electron carrier in bacterial systems. kelly wrighton (11/15/12)
ACD2_17_10

Not on your lists

comp(5920..6819)
DNA (900bp) protein (300aa)
ApbE family lipoprotein
ApbE-like (db=superfamily db_id=SSF143631 from=1 to=295 evalue=7.3e-55)
ApbE (db=HMMPfam db_id=PF02424 from=37 to=276 evalue=7.1e-39 interpro_id=IPR003374 interpro_description=ApbE-like lipoprotein GO=Biological Process: thiamin biosynthetic process (GO:0009228))
ApbE family lipoprotein; K03734 thiamine biosynthesis lipoprotein alias=ACD2_2952.37351.57G0010,ACD2_2952.37351.57_10,ACD2_C00017G00010 id=34562 tax=ACD2 species=Flavobacterium johnsoniae genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes organism_group=BD1-5 organism_desc=BD1-5
ACD2_17_11
ACD2, Gracilibacteria, Bacteria

Not on your lists

7029..7457
DNA (429bp) protein (143aa)
seg (db=Seg db_id=seg from=68 to=84)
seg (db=Seg db_id=seg from=11 to=23)
transmembrane_regions (db=TMHMM db_id=tmhmm from=111 to=133)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
ACD2_17_12
ACD2, Gracilibacteria, Bacteria

Not on your lists

8635..11193
DNA (2559bp) protein (853aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=57 to=79)
transmembrane_regions 57..79 Tax=ACD2
ACD2_17_13
ACD2, Gracilibacteria, Bacteria

Not on your lists

11201..12874
DNA (1674bp) protein (558aa)
S-layer domain protein n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D7I7_PAESJ (db=UNIREF evalue=1.0e-14 bit_score=85.1 identity=31.87 coverage=30.6451612903226)
S-layer domain protein (db=KEGG evalue=1.0e-14 bit_score=85.1 identity=31.87 coverage=30.6451612903226)
seg (db=Seg db_id=seg from=300 to=354)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
ACD2_17_14
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(12990..14507)
DNA (1518bp) protein (506aa)
Prolyl-tRNA synthetase n=1 Tax=Prevotella bergensis DSM 17361 RepID=D1PYU5_9BACT (db=UNIREF evalue=9.0e-96 bit_score=354.0 identity=40.31 coverage=95.8498023715415)
proS; prolyl-tRNA synthetase (EC:6.1.1.15)
proS; prolyl-tRNA synthetase (EC:6.1.1.15)
proS; prolyl-tRNA synthetase (EC:6.1.1.15)
ACD2_17_15
ACD2, Gracilibacteria, Bacteria

Not on your lists

14792..15217
DNA (426bp) protein (142aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=23)
transmembrane_regions 4..23 Tax=ACD2
ACD2_17_16
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(15420..15638)
DNA (219bp) protein (73aa)
15420..15638 - (rbs_motif=TATAA rbs_spacer=3bp)
hypothetical protein Tax=ACD2
ACD2_17_17
ACD2, Gracilibacteria, Bacteria

Not on your lists

16384..17913
DNA (1530bp) protein (510aa)
seg (db=Seg db_id=seg from=11 to=32)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
Pili subunits (db=superfamily db_id=SSF54523 from=11 to=108 evalue=9.5e-18)
Concanavalin A-like lectins/glucanases (db=superfamily db_id=SSF49899 from=302 to=507 evalue=2.0e-14 interpro_id=IPR008985 interpro_description=Concanavalin A-like lectin/glucanase)
ACD2_17_18
ACD2, Gracilibacteria, Bacteria

Not on your lists

17979..19511
DNA (1533bp) protein (511aa)
hypothetical protein
seg (db=Seg db_id=seg from=12 to=33)
seg (db=Seg db_id=seg from=285 to=311)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
ACD2_17_19
unknown

Not on your lists


comp(19559..20797)
DNA (1239bp) protein (413aa)
RNA binding S1 protein
RNA binding S1 domain protein n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B22D3 (db=UNIREF evalue=2.0e-62 bit_score=243.0 identity=37.65 coverage=79.1767554479419)
seg (db=Seg db_id=seg from=364 to=412)
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=267 to=384 evalue=2.2e-31 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
ACD2_17_20
ACD2, Gracilibacteria, Bacteria

Not on your lists

21389..23368
DNA (1980bp) protein (660aa)
ATP-dependent DNA helicase RecG n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HMV7_9FIRM (db=UNIREF evalue=2.0e-117 bit_score=427.0 identity=38.62 coverage=95.4545454545455)
ATP-dependent DNA helicase RecG
ATP-dependent DNA helicase RecG
ATP-dependent DNA helicase RecG
ACD2_17_21
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(23304..23486)
DNA (183bp) protein (61aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
transmembrane_regions 13..35 Tax=ACD2
ACD2_17_22
ACD2, Gracilibacteria, Bacteria

Not on your lists

23516..24124
DNA (609bp) protein (203aa)
seg (db=Seg db_id=seg from=130 to=140)
seg (db=Seg db_id=seg from=14 to=31)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
PROKAR_NTER_METHYL (db=PatternScan db_id=PS00409 from=7 to=27 evalue=0.0 interpro_id=IPR001120 interpro_description=Prokaryotic N-terminal methylation site)
ACD2_17_23

Not on your lists

24333..24896
DNA (564bp) protein (188aa)
ECF subfamily RNA polymerase sigma factor
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=15 to=180 evalue=7.5e-33 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=9 to=84 evalue=3.3e-17 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
no description (db=Gene3D db_id=G3DSA:1.10.1740.10 from=4 to=88 evalue=1.5e-15)
ACD2_17_24
ACD2, Gracilibacteria, Bacteria

Not on your lists

24900..25694
DNA (795bp) protein (265aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=33 to=55)
transmembrane_regions (db=TMHMM db_id=tmhmm from=70 to=92)
transmembrane_regions (db=TMHMM db_id=tmhmm from=105 to=127)
seg (db=Seg db_id=seg from=60 to=85)
ACD2_17_25
unknown

Not on your lists

comp(25834..27033)
DNA (1200bp) protein (400aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Acidaminococcus sp. D21 RepID=C0WDM7_9FIRM (db=UNIREF evalue=8.0e-57 bit_score=224.0 identity=35.22 coverage=99.25)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
seg (db=Seg db_id=seg from=330 to=345)
ACD2_17_26
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(27043..27720)
DNA (678bp) protein (226aa)
ABC transporter-like protein
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=5 to=225 evalue=2.9e-94)
ABC TRANSPORTER (db=HMMPanther db_id=PTHR19222:SF32 from=5 to=225 evalue=2.9e-94)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=2 to=222 evalue=4.7e-54)
ACD2_17_27
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(27766..29910)
DNA (2145bp) protein (715aa)
membrane-fusion protein
seg (db=Seg db_id=seg from=694 to=707)
seg (db=Seg db_id=seg from=518 to=529)
seg (db=Seg db_id=seg from=338 to=359)
ACD2_17_28
ACD2, Gracilibacteria, Bacteria

Not on your lists

30230..31915
DNA (1686bp) protein (562aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=108 to=130)
transmembrane_regions (db=TMHMM db_id=tmhmm from=341 to=358)
transmembrane_regions (db=TMHMM db_id=tmhmm from=370 to=389)
ACD2_17_29
unknown

Not on your lists

comp(31941..32375)
DNA (435bp) protein (145aa)
MarR family transcriptional regulator n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YTP0_9FLAO (db=UNIREF evalue=5.0e-25 bit_score=116.0 identity=48.53 coverage=92.4137931034483)
slyA_3; Transcriptional regulator SlyA
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=1 to=140 evalue=2.1e-12)
MarR (db=HMMPfam db_id=PF01047 from=34 to=91 evalue=8.4e-07 interpro_id=IPR000835 interpro_description=HTH transcriptional regulator, MarR GO=Molecular Function: transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD2_17_30
ACD2, Gracilibacteria, Bacteria

Not on your lists

32585..33454
DNA (870bp) protein (290aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=157 to=175)
seg (db=Seg db_id=seg from=262 to=288)
transmembrane_regions 7..29 Tax=ACD2
Displaying items 1-30 of 35 in total

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